Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009377

Physical Location & Seq

Genomic Coordinates Reverse (-)

13500467 .. 13502617

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATGAGAGGTGTAGGAGGTCCTCTTCTGTGCATTGGCGATCTGCTGAGCGACGTGGGGGAGTCAGATGCTTCGCCACCACCGCAACAACATGAGCCCTCGCCGTCGTCTTCGTCTGTTTCCAGCTCCGCTCAGAGCTTGGACCTCACCAAGTTGTTTCAGGAGAACTATGAGCAGTTGAATGAGGCGCTTGGCGGTACCGACCACTCATGGGCAGCTCTTACTTTGAAGTTATGCAGTGCTCTGCAAACTGCAAACAAGTTAGTTCAATCAACAAACTCAAATGTCATGTTGTTGTCGGAGAAGGTTGGAGAGCTTGAGGGAGTTGTTAAGAGGGCAGATTCTGCCATGGCTGCAGCAAGGGTCGTCCATGGTTCACTAAACAAAAGGGAAGTACCACTTTATAGCAATCAAAACGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

14.91

Weight (kDa)

5.28

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08240 AT4G08240
fragaria_vesca	FvH4_2g26530
malus_domestica	MD03G1200300.v1.1 MD08G1167900.v1.1 MD15G1353300.v1.1
prunus_persica	Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1
pyrus_communis	pycom08g14330
rosa_chinensis	RchiOBHm_Chr6g0295401
rosa_laevigata	RLG00000011809
rosa_multiflora	Rmu_sc0003058.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441530 Rroxscaffold_7G00172530
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363700 Rh6BG371900 Rh6CG378300 Rh6DG364500
rosa_wichuraiana	Rw6G031750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	131
AciI	CCGC	3 cut(s)	83, 129, 195
AfaI	GTAC	2 cut(s)	199, 396
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	181, 229, 269
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	4 cut(s)	126, 138, 218, 316
AluI	AGCT	4 cut(s)	126, 138, 218, 316
Alw21I	GWGCWC	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	344
ApeKI	GCWGC	3 cut(s)	215, 353, 356
Asp718I	GGTACC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	20, 142
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	20, 142
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	227, 340, 368
BceAI	ACGGC	1 cut(s)	88
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	191
BisI	GCNGC	3 cut(s)	216, 354, 357
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	3 cut(s)	217, 355, 358
Bme18I	GGWCC	2 cut(s)	20, 142
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	20, 142
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	348, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	348, 370
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	38, 146
BseXI	GCAGC	3 cut(s)	227, 340, 368
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	99, 244
Bsp143I	GATC	1 cut(s)	40
Bsp1720I	GCTNAGC	1 cut(s)	47
Bsp19I	CCATGG	2 cut(s)	348, 370
BspACI	CCGC	3 cut(s)	83, 129, 195
BspCNI	CTCAG	2 cut(s)	39, 145
BspLI	GGNNCC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	348, 370
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	2 cut(s)	348, 370
Bst6I	CTCTTC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	47, 132
BstDSI	CCRYGG	2 cut(s)	348, 370
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 344, 353
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	3 cut(s)	227, 340, 368
BstV2I	GAAGAC	1 cut(s)	102
BtgI	CCRYGG	2 cut(s)	348, 370
BtrI	CACGTC	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	20, 142
Csp6I	GTAC	2 cut(s)	198, 395
CviAII	CATG	5 cut(s)	92, 210, 289, 349, 371
CviJI	RGCY	6 cut(s)	97, 126, 138, 218, 316, 353
CviKI_1	RGCY	6 cut(s)	97, 126, 138, 218, 316, 353
CviQI	GTAC	2 cut(s)	198, 395
DdeI	CTNAG	2 cut(s)	47, 132
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	348, 370
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	20, 142
EcoO109I	RGGNCCY	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	348, 370
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	2 cut(s)	348, 370
FaeI	CATG	5 cut(s)	95, 213, 292, 352, 374
FaiI	YATR	8 cut(s)	93, 171, 211, 235, 290, 350, 372, 405
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	5 cut(s)	91, 209, 288, 348, 370
Fnu4HI	GCNGC	3 cut(s)	216, 354, 357
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	216, 354, 357
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	3 cut(s)	216, 354, 357
HaeII	RGCGCY	1 cut(s)	191
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	5 cut(s)	95, 213, 292, 352, 374
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	62, 341
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	3 cut(s)	67, 135, 301
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	2 cut(s)	56, 109
HpyAV	CCTTC	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	5 cut(s)	33, 237, 247, 254, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 344, 353
HpyF3I	CTNAG	2 cut(s)	47, 132
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	95, 213, 292, 352, 374
HspAI	GCGC	1 cut(s)	188
KpnI	GGTACC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	2 cut(s)	136, 146
Lsp1109I	GCAGC	3 cut(s)	227, 340, 368
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	42
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	17, 102
MhlI	GDGCHC	2 cut(s)	99, 244
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	279, 289
MnlI	CCTC	7 cut(s)	11, 33, 109, 155, 178, 313, 327
MseI	TTAA	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	82, 344, 353
NcoI	CCATGG	2 cut(s)	348, 370
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	5 cut(s)	95, 213, 292, 352, 374
NlaIV	GGNNCC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	217, 355, 358
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	20, 142
PspPPI	RGGWCCY	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	199, 396
RsaNI	GTAC	2 cut(s)	198, 395
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	3 cut(s)	216, 354, 357
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	2 cut(s)	20, 142
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	99, 244
SetI	ASST	9 cut(s)	13, 22, 57, 128, 140, 147, 220, 309, 318
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	2 cut(s)	20, 142
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SsiI	CCGC	3 cut(s)	83, 129, 195
StyI	CCWWGG	2 cut(s)	348, 370
TaiI	ACGT	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	3 cut(s)	215, 353, 356
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	20, 142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.