AT4G08250

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
5196787 .. 5198238
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G08250.1

Sequence Viewer

Length: 1452 bp
ATGAATTATCCTTACGAGGACTTCTTGGACCTCTTCTTCTCTACCCACACTGACCCGCTTGCCACGGCTGCAAGCACCTCTTCGAATGGTTATAGCTTGAATGATCTTGACATTGATTGGGACTGTGACTTCCGTGATGTCATTGAATCCATTATGGGTGATGAAGGAGCCATGATGGAACCGGAATCGGAAGCTGTTCCAATGCTTCATGACCAGGAGGGACTTTGTAACTCTGCGTCAACGGGTTTGTCTGTGGCTGATGGGGTTAGTTTTGGTGAGCCTAAGACTGATGAATCAAAGGGCTTGAGGTTGGTTCACTTACTTGTGGCTGCTGCTGATGCGTCAACTGGTGCGAACAAGTCTAGAGAGCTAACTCGGGTTATACTTGCAAGGCTTAAAGATTTGGTTTCTCCTGGTGACCGAACTAACATGGAGAGGTTAGCTGCTCACTTCACCAACGGACTTTCAAAGTTGCTCGAACGAGATAGTGTTCTGTGTCCCCAACAACATCGTGATGATGTCTATGATCAGGCGGATGTGATCTCAGCGTTCGAACTGCTGCAAAACATGTCTCCATATGTCAACTTTGGTTACCTCACTGCCACACAGGCTATTCTTGAAGCTGTGAAGTATGAACGTCGAATCCATATAGTGGATTACGATATCAATGAAGGCGTTCAGTGGGCTTCATTGATGCAAGCCTTGGTGTCTAGAAATACAGGCCCGTCAGCCCAACATCTTAGAATCACGGCTTTGTCACGAGCAACAAACGGTAAAAAATCCGTGGCTGCAGTCCAAGAGACTGGGCGGCGTCTAACTGCGTTTGCCGATTCTATCGGCCAGCCATTTTCATATCAACACTGTAAACTTGACACCAATGCATTCAGCACATCATCTTTGAAACTTGTAAGAGGAGAAGCAGTGGTAATCAATTGTATGTTGCATCTTCCTCGGTTTAGTCACCAAACACCCAGTTCAGTCATTTCCTTTTTGTCGGAAGCTAAAACTCTAAACCCGAAACTTGTTACGCTTGTTCACGAAGAAGTTGGTCTGATGGGAAACCAAGGTTTTCTATATCGTTTTATGGACTTGCTACATCAGTTCTCAGCCATATTCGACTCTCTAGAGGCAGGCCTTTCAATCGCTAACCCGGCCCGTGGCTTTGTTGAGCGTGTTTTTATCGGTCCTTGGGTTGCTAATTGGTTGACGCGTATCACCGCTAATGATGCAGAAGTCGAGAGCTTTGCTTCGTGGCCACAGTGGTTAGAGACTAATGGGTTCAAACCCTTGGAAGTGAGCTTTACCAACCGTTGTCAAGCAAAACTCCTTTTGAGTTTGTTTAATGATGGATTTAGAGTGGAAGAATTGGGCCAAAACGGGCTCGTTTTGGGATGGAAATCTCGGCGTCTTGTGTCGGCCTCCTTTTGGGCCTCGTGCCAGACGAATCAGTAA

Protein Analysis

483

Amino Acids

53.54

Weight (kDa)

5.18

Isoelectric Point (pI)

24.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 104 - 476 9.9e-108 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015200)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 652
AccII CGCG 1 cut(s) 1210
AciI CCGC 4 cut(s) 56, 533, 808, 1218
AcoI YGGCCR 2 cut(s) 838, 1253
AcyI GRCGYC 2 cut(s) 811, 1405
AfiI CCNNNNNNNGG 3 cut(s) 652, 1157, 1425
AflIII ACRYGT 2 cut(s) 567, 1208
AgsI TTSAA 7 cut(s) 100, 146, 468, 620, 901, 1140, 1282
AjnI CCWGG 2 cut(s) 213, 412
AloI GAACNNNNNNTCC 2 cut(s) 627, 659
AluBI AGCT 8 cut(s) 96, 194, 370, 443, 623, 1001, 1242, 1299
AluI AGCT 8 cut(s) 96, 194, 370, 443, 623, 1001, 1242, 1299
Alw26I GTCTC 3 cut(s) 576, 794, 1262
Ama87I CYCGRG 1 cut(s) 375
AoxI GGCC 8 cut(s) 721, 838, 1132, 1152, 1253, 1369, 1416, 1428
ApeKI GCWGC 6 cut(s) 68, 329, 332, 443, 559, 788
Asp700I GAANNNNTTC 2 cut(s) 195, 675
AspS9I GGNCC 6 cut(s) 28, 722, 1153, 1184, 1369, 1428
AsuC2I CCSGG 1 cut(s) 1151
AsuHPI GGTGA 6 cut(s) 170, 287, 428, 445, 953, 1207
AsuII TTCGAA 2 cut(s) 83, 552
AvaI CYCGRG 1 cut(s) 375
AvaII GGWCC 2 cut(s) 28, 1184
BalI TGGCCA 1 cut(s) 1255
BanII GRGCYC 1 cut(s) 1383
BauI CACGAG 2 cut(s) 759, 1432
BbvI GCAGC 6 cut(s) 55, 316, 319, 430, 546, 775
BccI CCATC 5 cut(s) 169, 254, 1048, 1340, 1386
BceAI ACGGC 2 cut(s) 81, 765
BcgI CGANNNNNNTGC 4 cut(s) 932, 966, 1226, 1260
BciT130I CCWGG 2 cut(s) 215, 414
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 1151
BcoDI GTCTC 3 cut(s) 576, 794, 1262
BfaI CTAG 3 cut(s) 363, 711, 1124
BfmI CTRYAG 1 cut(s) 789
BglI GCCNNNNNGGC 1 cut(s) 608
BisI GCNGC 7 cut(s) 69, 330, 333, 444, 560, 789, 809
BlsI GCNGC 7 cut(s) 70, 331, 334, 445, 561, 790, 810
Bme1390I CCNGG 3 cut(s) 215, 414, 1151
Bme18I GGWCC 2 cut(s) 28, 1184
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 6 cut(s) 28, 722, 1153, 1184, 1369, 1428
BmiI GGNNCC 2 cut(s) 169, 180
BmrFI CCNGG 3 cut(s) 215, 414, 1151
BmrI ACTGGG 2 cut(s) 813, 966
BmsI GCATC 4 cut(s) 328, 684, 952, 1216
BmuI ACTGGG 2 cut(s) 813, 966
Bpu14I TTCGAA 2 cut(s) 83, 552
BpuEI CTTGAG 1 cut(s) 325
BpuMI CCSGG 1 cut(s) 1151
BsaBI GATNNNNATC 1 cut(s) 1396
BsaHI GRCGYC 2 cut(s) 811, 1405
BsaJI CCNNGG 8 cut(s) 63, 702, 783, 950, 1063, 1156, 1187, 1287
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 906, 936
Bsc4I CCNNNNNNNGG 3 cut(s) 652, 1157, 1425
Bse1I ACTGG 3 cut(s) 352, 808, 972
Bse8I GATNNNNATC 1 cut(s) 1396
BseBI CCWGG 2 cut(s) 215, 414
BseDI CCNNGG 8 cut(s) 63, 702, 783, 950, 1063, 1156, 1187, 1287
BseGI GGATG 2 cut(s) 541, 1397
BseJI GATNNNNATC 1 cut(s) 1396
BseLI CCNNNNNNNGG 3 cut(s) 652, 1157, 1425
BseMII CTCAG 2 cut(s) 558, 1119
BseNI ACTGG 3 cut(s) 352, 808, 972
BseRI GAGGAG 1 cut(s) 927
BseXI GCAGC 6 cut(s) 55, 316, 319, 430, 546, 775
Bsh1236I CGCG 1 cut(s) 1210
BshFI GGCC 8 cut(s) 723, 840, 1134, 1154, 1255, 1371, 1418, 1430
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 2 cut(s) 182, 1151
BslFI GGGAC 3 cut(s) 134, 234, 483
BslI CCNNNNNNNGG 3 cut(s) 652, 1157, 1425
BsmAI GTCTC 3 cut(s) 576, 794, 1262
BsmFI GGGAC 3 cut(s) 134, 234, 483
BsmI GAATGC 1 cut(s) 881
BsnI GGCC 8 cut(s) 723, 840, 1134, 1154, 1255, 1371, 1418, 1430
BsoBI CYCGRG 1 cut(s) 375
Bsp119I TTCGAA 2 cut(s) 83, 552
Bsp1286I GDGCHC 1 cut(s) 1383
Bsp143I GATC 3 cut(s) 103, 526, 540
BspACI CCGC 4 cut(s) 56, 533, 808, 1218
BspANI GGCC 8 cut(s) 723, 840, 1134, 1154, 1255, 1371, 1418, 1430
BspCNI CTCAG 2 cut(s) 557, 1118
BspFNI CGCG 1 cut(s) 1210
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 169, 180
BspMAI CTGCAG 1 cut(s) 793
BspT104I TTCGAA 2 cut(s) 83, 552
BsrI ACTGG 3 cut(s) 352, 808, 972
BssECI CCNNGG 8 cut(s) 63, 702, 783, 950, 1063, 1156, 1187, 1287
BssMI GATC 3 cut(s) 103, 526, 540
BssNI GRCGYC 2 cut(s) 811, 1405
BssSI CACGAG 2 cut(s) 759, 1432
BssT1I CCWWGG 4 cut(s) 702, 1063, 1187, 1287
Bst2BI CACGAG 2 cut(s) 759, 1432
Bst2UI CCWGG 2 cut(s) 215, 414
Bst4CI ACNGT 5 cut(s) 125, 773, 863, 1260, 1310
Bst6I CTCTTC 2 cut(s) 38, 85
BstACI GRCGYC 2 cut(s) 811, 1405
BstBI TTCGAA 2 cut(s) 83, 552
BstC8I GCNNGC 5 cut(s) 60, 73, 699, 842, 1132
BstDEI CTNAG 4 cut(s) 282, 544, 740, 1105
BstDSI CCRYGG 3 cut(s) 63, 783, 1156
BstEII GGTNACC 2 cut(s) 416, 590
BstF5I GGATG 2 cut(s) 541, 1397
BstFNI CGCG 1 cut(s) 1210
BstKTI GATC 3 cut(s) 106, 529, 543
BstMAI GTCTC 3 cut(s) 576, 794, 1262
BstMBI GATC 3 cut(s) 103, 526, 540
BstMWI GCNNNNNNNGC 5 cut(s) 68, 338, 608, 1151, 1226
BstNI CCWGG 2 cut(s) 215, 414
BstNSI RCATGY 1 cut(s) 571
BstPI GGTNACC 2 cut(s) 416, 590
BstSCI CCNGG 3 cut(s) 213, 412, 1149
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 1 cut(s) 1210
BstV1I GCAGC 6 cut(s) 55, 316, 319, 430, 546, 775
BstXI CCANNNNNNTGG 1 cut(s) 803
BsuRI GGCC 8 cut(s) 723, 840, 1134, 1154, 1255, 1371, 1418, 1430
BtgI CCRYGG 3 cut(s) 63, 783, 1156
BtsCI GGATG 2 cut(s) 541, 1397
BtsI GCAGTG 2 cut(s) 597, 927
BtsIMutI CAGTG 6 cut(s) 48, 597, 686, 859, 927, 1265
Cac8I GCNNGC 5 cut(s) 60, 73, 699, 842, 1132
CciI TCATGA 1 cut(s) 208
Cfr13I GGNCC 6 cut(s) 28, 722, 1153, 1184, 1369, 1428
CseI GACGC 5 cut(s) 225, 330, 800, 1216, 1394
CviAII CATG 4 cut(s) 172, 209, 430, 568
DdeI CTNAG 4 cut(s) 282, 544, 740, 1105
DpnI GATC 3 cut(s) 105, 528, 542
DpnII GATC 3 cut(s) 103, 526, 540
EaeI YGGCCR 2 cut(s) 838, 1253
Eam1104I CTCTTC 2 cut(s) 38, 85
EarI CTCTTC 2 cut(s) 38, 85
EciI GGCGGA 1 cut(s) 548
Eco130I CCWWGG 4 cut(s) 702, 1063, 1187, 1287
Eco147I AGGCCT 1 cut(s) 1134
Eco24I GRGCYC 1 cut(s) 1383
Eco32I GATATC 1 cut(s) 664
Eco47I GGWCC 2 cut(s) 28, 1184
Eco88I CYCGRG 1 cut(s) 375
Eco91I GGTNACC 2 cut(s) 416, 590
EcoO65I GGTNACC 2 cut(s) 416, 590
EcoRII CCWGG 2 cut(s) 213, 412
EcoRV GATATC 1 cut(s) 664
EcoT14I CCWWGG 4 cut(s) 702, 1063, 1187, 1287
EcoT22I ATGCAT 1 cut(s) 883
EcoT38I GRGCYC 1 cut(s) 1383
ErhI CCWWGG 4 cut(s) 702, 1063, 1187, 1287
FaeI CATG 4 cut(s) 175, 212, 433, 571
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FaqI GGGAC 3 cut(s) 134, 234, 483
FatI CATG 4 cut(s) 171, 208, 429, 567
FauI CCCGC 1 cut(s) 63
FauNDI CATATG 1 cut(s) 577
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 7 cut(s) 69, 330, 333, 444, 560, 789, 809
FokI GGATG 2 cut(s) 548, 1404
FriOI GRGCYC 1 cut(s) 1383
Fsp4HI GCNGC 7 cut(s) 69, 330, 333, 444, 560, 789, 809
FspBI CTAG 3 cut(s) 363, 711, 1124
GluI GCNGC 7 cut(s) 69, 330, 333, 444, 560, 789, 809
HaeIII GGCC 8 cut(s) 723, 840, 1134, 1154, 1255, 1371, 1418, 1430
HapII CCGG 2 cut(s) 182, 1151
HgaI GACGC 5 cut(s) 225, 330, 800, 1216, 1394
Hin1I GRCGYC 2 cut(s) 811, 1405
Hin1II CATG 4 cut(s) 175, 212, 433, 571
HincII GTYRAC 4 cut(s) 240, 345, 583, 1206
HindII GTYRAC 4 cut(s) 240, 345, 583, 1206
HinfI GANTC 8 cut(s) 146, 185, 293, 642, 744, 830, 1118, 1444
HpaII CCGG 2 cut(s) 182, 1151
HphI GGTGA 6 cut(s) 170, 287, 428, 445, 953, 1207
Hpy166II GTNNAC 7 cut(s) 240, 316, 345, 583, 866, 1036, 1206
Hpy188I TCNGA 3 cut(s) 190, 997, 1053
Hpy8I GTNNAC 7 cut(s) 240, 316, 345, 583, 866, 1036, 1206
Hpy99I CGWCG 1 cut(s) 642
HpyAV CCTTC 2 cut(s) 158, 665
HpyCH4III ACNGT 5 cut(s) 125, 773, 863, 1260, 1310
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 8 cut(s) 71, 389, 562, 697, 791, 881, 943, 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 338, 608, 1151, 1226
HpyF3I CTNAG 4 cut(s) 282, 544, 740, 1105
HpySE526I ACGT 1 cut(s) 637
Hsp92I GRCGYC 2 cut(s) 811, 1405
Hsp92II CATG 4 cut(s) 175, 212, 433, 571
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 3 cut(s) 103, 526, 540
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 6 cut(s) 55, 316, 319, 430, 546, 775
LweI GCATC 4 cut(s) 328, 684, 952, 1216
MaeI CTAG 3 cut(s) 363, 711, 1124
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 7 cut(s) 125, 227, 416, 590, 756, 959, 1024
MalI GATC 3 cut(s) 105, 528, 542
MboI GATC 3 cut(s) 103, 526, 540
MboII GAAGA 6 cut(s) 25, 28, 72, 938, 1052, 1373
MfeI CAATTG 1 cut(s) 931
MhlI GDGCHC 1 cut(s) 1383
MlsI TGGCCA 1 cut(s) 1255
MluCI AATT 4 cut(s) 4, 931, 1198, 1364
MluI ACGCGT 1 cut(s) 1208
MluNI TGGCCA 1 cut(s) 1255
MlyI GAGTC 1 cut(s) 1112
MmeI TCCRAC 1 cut(s) 975
Mox20I TGGCCA 1 cut(s) 1255
Mph1103I ATGCAT 1 cut(s) 883
MroXI GAANNNNTTC 2 cut(s) 195, 675
MscI TGGCCA 1 cut(s) 1255
MseI TTAA 2 cut(s) 396, 1341
MslI CAYNNNNRTG 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 1255
MspI CCGG 2 cut(s) 182, 1151
MspR9I CCNGG 3 cut(s) 215, 414, 1151
MunI CAATTG 1 cut(s) 931
Mva1269I GAATGC 1 cut(s) 881
MvaI CCWGG 2 cut(s) 215, 414
MvnI CGCG 1 cut(s) 1210
MwoI GCNNNNNNNGC 5 cut(s) 68, 338, 608, 1151, 1226
NciI CCSGG 1 cut(s) 1151
NdeI CATATG 1 cut(s) 577
NdeII GATC 3 cut(s) 103, 526, 540
NlaIII CATG 4 cut(s) 175, 212, 433, 571
NlaIV GGNNCC 2 cut(s) 169, 180
NmeAIII GCCGAG 1 cut(s) 1381
NmuCI GTSAC 4 cut(s) 125, 416, 756, 959
NsiI ATGCAT 1 cut(s) 883
NspI RCATGY 1 cut(s) 571
NspV TTCGAA 2 cut(s) 83, 552
PagI TCATGA 1 cut(s) 208
PceI AGGCCT 1 cut(s) 1134
PciI ACATGT 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 1439
PctI GAATGC 1 cut(s) 881
PdmI GAANNNNTTC 2 cut(s) 195, 675
PfeI GAWTC 7 cut(s) 146, 185, 293, 642, 744, 830, 1444
PflMI CCANNNNNTGG 1 cut(s) 652
PkrI GCNGC 7 cut(s) 70, 331, 334, 445, 561, 790, 810
PleI GAGTC 1 cut(s) 1112
PpsI GAGTC 1 cut(s) 1112
PscI ACATGT 1 cut(s) 567
Psp6I CCWGG 2 cut(s) 213, 412
PspEI GGTNACC 2 cut(s) 416, 590
PspGI CCWGG 2 cut(s) 213, 412
PspN4I GGNNCC 2 cut(s) 169, 180
PspPI GGNCC 6 cut(s) 28, 722, 1153, 1184, 1369, 1428
PstI CTGCAG 1 cut(s) 793
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 2 cut(s) 396, 1341
SatI GCNGC 7 cut(s) 69, 330, 333, 444, 560, 789, 809
Sau3AI GATC 3 cut(s) 103, 526, 540
Sau96I GGNCC 6 cut(s) 28, 722, 1153, 1184, 1369, 1428
SchI GAGTC 1 cut(s) 1112
ScrFI CCNGG 3 cut(s) 215, 414, 1151
SduI GDGCHC 1 cut(s) 1383
SfaNI GCATC 4 cut(s) 328, 684, 952, 1216
SfcI CTRYAG 1 cut(s) 789
SfuI TTCGAA 2 cut(s) 83, 552
SinI GGWCC 2 cut(s) 28, 1184
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 4 cut(s) 4, 931, 1198, 1364
SseBI AGGCCT 1 cut(s) 1134
SsiI CCGC 4 cut(s) 56, 533, 808, 1218
SspMI CTAG 3 cut(s) 363, 711, 1124
StuI AGGCCT 1 cut(s) 1134
StyD4I CCNGG 3 cut(s) 213, 412, 1149
StyI CCWWGG 4 cut(s) 702, 1063, 1187, 1287
TaaI ACNGT 5 cut(s) 125, 773, 863, 1260, 1310
TaiI ACGT 1 cut(s) 640
TaqI TCGA 6 cut(s) 83, 477, 552, 640, 1116, 1236
TaqII GACCGA 2 cut(s) 435, 1172
TasI AATT 4 cut(s) 4, 931, 1198, 1364
TauI GCSGC 1 cut(s) 811
TfiI GAWTC 7 cut(s) 146, 185, 293, 642, 744, 830, 1444
Tru1I TTAA 2 cut(s) 396, 1341
Tru9I TTAA 2 cut(s) 396, 1341
TscAI CASTG 6 cut(s) 55, 604, 686, 866, 927, 1265
TseFI GTSAC 4 cut(s) 125, 416, 756, 959
TseI GCWGC 6 cut(s) 68, 329, 332, 443, 559, 788
Tsp45I GTSAC 4 cut(s) 125, 416, 756, 959
TspDTI ATGAA 8 cut(s) 17, 177, 197, 306, 648, 678, 684, 840
TspGWI ACGGA 3 cut(s) 122, 474, 772
TspRI CASTG 6 cut(s) 55, 604, 686, 866, 927, 1265
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 28, 1184
XbaI TCTAGA 3 cut(s) 362, 710, 1123
XceI RCATGY 1 cut(s) 571
XmnI GAANNNNTTC 2 cut(s) 195, 675
XspI CTAG 3 cut(s) 363, 711, 1124
Zsp2I ATGCAT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.