Belongs to the GRAS family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G08250 |
| fragaria_vesca | FvH4_2g26540 |
| malus_domestica | MD08G1167600.v1.1 MD15G1353200.v1.1 |
| prunus_persica | Prupe.1G501500_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0295411 |
| rosa_laevigata | RLG00000011806 |
| rosa_multiflora | Rmu_co8465007.1_g000001 Rmu_sc0003058.1_g000004 |
| rosa_roxburghii | Rroxscaffold_7G00172520 |
| rosa_rugosa | Rorug06G0250400 |
| rosa_samantha | Rh6AG363800 Rh6BG372000 Rh6CG378400 Rh6DG364800 |
| rosa_wichuraiana | Rw6G031760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1493 |
| AccB1I | GGYRCC | 1 cut(s) | 521 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 709, 1022 |
| AccI | GTMKAC | 2 cut(s) | 123, 1179 |
| AccII | CGCG | 2 cut(s) | 134, 1331 |
| AccIII | TCCGGA | 2 cut(s) | 1036, 1061 |
| AciI | CCGC | 7 cut(s) | 368, 697, 791, 871, 882, 891, 1331 |
| AclWI | GGATC | 3 cut(s) | 727, 740, 809 |
| AcoI | YGGCCR | 1 cut(s) | 9 |
| AcyI | GRCGYC | 2 cut(s) | 522, 1490 |
| AdeI | CACNNNGTG | 1 cut(s) | 29 |
| AfaI | GTAC | 3 cut(s) | 104, 463, 1163 |
| AgeI | ACCGGT | 1 cut(s) | 1029 |
| AjiI | CACGTC | 2 cut(s) | 276, 595 |
| AjnI | CCWGG | 3 cut(s) | 201, 504, 618 |
| AluBI | AGCT | 8 cut(s) | 154, 178, 217, 613, 1175, 1359, 1384, 1478 |
| AluI | AGCT | 8 cut(s) | 154, 178, 217, 613, 1175, 1359, 1384, 1478 |
| Alw21I | GWGCWC | 2 cut(s) | 180, 1222 |
| Alw26I | GTCTC | 5 cut(s) | 451, 857, 938, 1038, 1119 |
| AlwI | GGATC | 3 cut(s) | 727, 740, 809 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1505 |
| Ama87I | CYCGRG | 4 cut(s) | 414, 1081, 1190, 1221 |
| Aor13HI | TCCGGA | 2 cut(s) | 1036, 1061 |
| ApaI | GGGCCC | 1 cut(s) | 1254 |
| ApeKI | GCWGC | 5 cut(s) | 63, 136, 482, 602, 613 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1118, 1150 |
| AsiGI | ACCGGT | 1 cut(s) | 1029 |
| AspLEI | GCGC | 6 cut(s) | 136, 235, 320, 392, 524, 1331 |
| AsuC2I | CCSGG | 2 cut(s) | 526, 1264 |
| AsuHPI | GGTGA | 3 cut(s) | 430, 1438, 1485 |
| AvaI | CYCGRG | 4 cut(s) | 414, 1081, 1190, 1221 |
| AvaII | GGWCC | 8 cut(s) | 148, 199, 352, 561, 685, 700, 852, 1111 |
| BaeGI | GKGCMC | 2 cut(s) | 651, 1254 |
| BalI | TGGCCA | 1 cut(s) | 11 |
| BamHI | GGATCC | 1 cut(s) | 732 |
| BanI | GGYRCC | 1 cut(s) | 521 |
| BanII | GRGCYC | 2 cut(s) | 180, 1254 |
| BauI | CACGAG | 1 cut(s) | 173 |
| BbsI | GAAGAC | 1 cut(s) | 315 |
| Bbv12I | GWGCWC | 2 cut(s) | 180, 1222 |
| BbvCI | CCTCAGC | 1 cut(s) | 375 |
| BbvI | GCAGC | 5 cut(s) | 75, 123, 494, 589, 600 |
| BccI | CCATC | 7 cut(s) | 187, 358, 363, 591, 770, 863, 1400 |
| BceAI | ACGGC | 3 cut(s) | 340, 822, 858 |
| BciT130I | CCWGG | 3 cut(s) | 203, 506, 620 |
| BclI | TGATCA | 2 cut(s) | 16, 993 |
| BcnI | CCSGG | 2 cut(s) | 526, 1264 |
| BcoDI | GTCTC | 5 cut(s) | 451, 857, 938, 1038, 1119 |
| BfaI | CTAG | 3 cut(s) | 515, 674, 768 |
| BfoI | RGCGCY | 2 cut(s) | 321, 525 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 665 |
| BglII | AGATCT | 1 cut(s) | 406 |
| BisI | GCNGC | 7 cut(s) | 64, 137, 483, 603, 614, 871, 891 |
| BlsI | GCNGC | 7 cut(s) | 65, 138, 484, 604, 615, 872, 892 |
| Bme1390I | CCNGG | 5 cut(s) | 203, 506, 526, 620, 1264 |
| Bme18I | GGWCC | 8 cut(s) | 148, 199, 352, 561, 685, 700, 852, 1111 |
| BmeT110I | CYCGRG | 4 cut(s) | 414, 1081, 1190, 1221 |
| BmgBI | CACGTC | 2 cut(s) | 276, 595 |
| BmrFI | CCNGG | 5 cut(s) | 203, 506, 526, 620, 1264 |
| BmrI | ACTGGG | 1 cut(s) | 136 |
| BmsI | GCATC | 3 cut(s) | 285, 741, 802 |
| BmuI | ACTGGG | 1 cut(s) | 136 |
| BpiI | GAAGAC | 1 cut(s) | 315 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 206, 238, 431, 463 |
| BpmI | CTGGAG | 2 cut(s) | 488, 602 |
| Bpu10I | CCTNAGC | 1 cut(s) | 375 |
| BpuEI | CTTGAG | 2 cut(s) | 419, 950 |
| BpuMI | CCSGG | 2 cut(s) | 526, 1264 |
| BsaHI | GRCGYC | 2 cut(s) | 522, 1490 |
| BsaI | GGTCTC | 1 cut(s) | 1038 |
| BsaJI | CCNNGG | 5 cut(s) | 505, 525, 759, 1082, 1119 |
| BsaWI | WCCGGW | 3 cut(s) | 1029, 1036, 1061 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 817, 847, 1122, 1152 |
| Bse118I | RCCGGY | 4 cut(s) | 158, 386, 1029, 1196 |
| Bse1I | ACTGG | 3 cut(s) | 104, 113, 131 |
| BseAI | TCCGGA | 2 cut(s) | 1036, 1061 |
| BseBI | CCWGG | 3 cut(s) | 203, 506, 620 |
| BseDI | CCNNGG | 5 cut(s) | 505, 525, 759, 1082, 1119 |
| BseGI | GGATG | 3 cut(s) | 583, 781, 855 |
| BseMII | CTCAG | 5 cut(s) | 204, 366, 486, 1185, 1512 |
| BseNI | ACTGG | 3 cut(s) | 104, 113, 131 |
| BseRI | GAGGAG | 2 cut(s) | 853, 1436 |
| BseSI | GKGCMC | 2 cut(s) | 651, 1254 |
| BseXI | GCAGC | 5 cut(s) | 75, 123, 494, 589, 600 |
| BsgI | GTGCAG | 1 cut(s) | 82 |
| Bsh1236I | CGCG | 2 cut(s) | 134, 1331 |
| Bsh1285I | CGRYCG | 1 cut(s) | 956 |
| BshNI | GGYRCC | 1 cut(s) | 521 |
| BshTI | ACCGGT | 1 cut(s) | 1029 |
| BsiEI | CGRYCG | 1 cut(s) | 956 |
| BsiHKAI | GWGCWC | 2 cut(s) | 180, 1222 |
| BsiHKCI | CYCGRG | 4 cut(s) | 414, 1081, 1190, 1221 |
| BsiSI | CCGG | 9 cut(s) | 159, 387, 525, 1030, 1037, 1062, 1114, 1197, 1263 |
| BslFI | GGGAC | 4 cut(s) | 143, 574, 865, 1444 |
| BsmAI | GTCTC | 5 cut(s) | 451, 857, 938, 1038, 1119 |
| BsmBI | CGTCTC | 2 cut(s) | 857, 1119 |
| BsmFI | GGGAC | 4 cut(s) | 143, 574, 865, 1444 |
| Bso31I | GGTCTC | 1 cut(s) | 1038 |
| BsoBI | CYCGRG | 4 cut(s) | 414, 1081, 1190, 1221 |
| Bsp120I | GGGCCC | 1 cut(s) | 1250 |
| Bsp1286I | GDGCHC | 4 cut(s) | 180, 651, 1222, 1254 |
| Bsp13I | TCCGGA | 2 cut(s) | 1036, 1061 |
| BspACI | CCGC | 7 cut(s) | 368, 697, 791, 871, 882, 891, 1331 |
| BspCNI | CTCAG | 5 cut(s) | 205, 367, 487, 1184, 1511 |
| BspEI | TCCGGA | 2 cut(s) | 1036, 1061 |
| BspFNI | CGCG | 2 cut(s) | 134, 1331 |
| BspPI | GGATC | 3 cut(s) | 727, 740, 809 |
| BspT107I | GGYRCC | 1 cut(s) | 521 |
| BspTNI | GGTCTC | 1 cut(s) | 1038 |
| BsrFI | RCCGGY | 4 cut(s) | 158, 386, 1029, 1196 |
| BsrI | ACTGG | 3 cut(s) | 104, 113, 131 |
| BssAI | RCCGGY | 4 cut(s) | 158, 386, 1029, 1196 |
| BssECI | CCNNGG | 5 cut(s) | 505, 525, 759, 1082, 1119 |
| BssNAI | GTATAC | 1 cut(s) | 1180 |
| BssNI | GRCGYC | 2 cut(s) | 522, 1490 |
| BssSI | CACGAG | 1 cut(s) | 173 |
| BssT1I | CCWWGG | 1 cut(s) | 759 |
| Bst1107I | GTATAC | 1 cut(s) | 1180 |
| Bst2BI | CACGAG | 1 cut(s) | 173 |
| Bst2UI | CCWGG | 3 cut(s) | 203, 506, 620 |
| Bst4CI | ACNGT | 3 cut(s) | 461, 909, 957 |
| Bst6I | CTCTTC | 1 cut(s) | 1101 |
| BstACI | GRCGYC | 2 cut(s) | 522, 1490 |
| BstC8I | GCNNGC | 6 cut(s) | 36, 156, 160, 756, 1004, 1198 |
| BstDEI | CTNAG | 8 cut(s) | 213, 375, 495, 797, 988, 1171, 1228, 1498 |
| BstDSI | CCRYGG | 1 cut(s) | 1119 |
| BstEII | GGTNACC | 1 cut(s) | 1025 |
| BstF5I | GGATG | 3 cut(s) | 583, 781, 855 |
| BstFNI | CGCG | 2 cut(s) | 134, 1331 |
| BstH2I | RGCGCY | 2 cut(s) | 321, 525 |
| BstHHI | GCGC | 6 cut(s) | 136, 235, 320, 392, 524, 1331 |
| BstMAI | GTCTC | 5 cut(s) | 451, 857, 938, 1038, 1119 |
| BstMCI | CGRYCG | 1 cut(s) | 956 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 324, 665, 890 |
| BstNI | CCWGG | 3 cut(s) | 203, 506, 620 |
| BstNSI | RCATGY | 2 cut(s) | 38, 1006 |
| BstPI | GGTNACC | 1 cut(s) | 1025 |
| BstSCI | CCNGG | 5 cut(s) | 201, 504, 524, 618, 1262 |
| BstSLI | GKGCMC | 2 cut(s) | 651, 1254 |
| BstUI | CGCG | 2 cut(s) | 134, 1331 |
| BstV1I | GCAGC | 5 cut(s) | 75, 123, 494, 589, 600 |
| BstV2I | GAAGAC | 1 cut(s) | 315 |
| BstX2I | RGATCY | 2 cut(s) | 406, 732 |
| BstYI | RGATCY | 2 cut(s) | 406, 732 |
| BstZ17I | GTATAC | 1 cut(s) | 1180 |
| BtgI | CCRYGG | 1 cut(s) | 1119 |
| BtrI | CACGTC | 2 cut(s) | 276, 595 |
| BtsCI | GGATG | 3 cut(s) | 583, 781, 855 |
| BtsIMutI | CAGTG | 2 cut(s) | 97, 210 |
| Cac8I | GCNNGC | 6 cut(s) | 36, 156, 160, 756, 1004, 1198 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1505 |
| CfoI | GCGC | 6 cut(s) | 136, 235, 320, 392, 524, 1331 |
| Cfr10I | RCCGGY | 4 cut(s) | 158, 386, 1029, 1196 |
| CseI | GACGC | 2 cut(s) | 140, 249 |
| Csp6I | GTAC | 3 cut(s) | 103, 462, 1162 |
| CspAI | ACCGGT | 1 cut(s) | 1029 |
| CviAII | CATG | 9 cut(s) | 35, 85, 469, 575, 689, 704, 724, 1003, 1150 |
| CviQI | GTAC | 3 cut(s) | 103, 462, 1162 |
| DdeI | CTNAG | 8 cut(s) | 213, 375, 495, 797, 988, 1171, 1228, 1498 |
| DinI | GGCGCC | 1 cut(s) | 523 |
| DraIII | CACNNNGTG | 1 cut(s) | 29 |
| EaeI | YGGCCR | 1 cut(s) | 9 |
| Eam1104I | CTCTTC | 1 cut(s) | 1101 |
| EarI | CTCTTC | 1 cut(s) | 1101 |
| Ecl136II | GAGCTC | 1 cut(s) | 178 |
| Eco130I | CCWWGG | 1 cut(s) | 759 |
| Eco147I | AGGCCT | 2 cut(s) | 758, 986 |
| Eco24I | GRGCYC | 2 cut(s) | 180, 1254 |
| Eco31I | GGTCTC | 1 cut(s) | 1038 |
| Eco47I | GGWCC | 8 cut(s) | 148, 199, 352, 561, 685, 700, 852, 1111 |
| Eco53kI | GAGCTC | 1 cut(s) | 178 |
| Eco88I | CYCGRG | 4 cut(s) | 414, 1081, 1190, 1221 |
| Eco91I | GGTNACC | 1 cut(s) | 1025 |
| EcoICRI | GAGCTC | 1 cut(s) | 178 |
| EcoO109I | RGGNCCY | 5 cut(s) | 379, 499, 561, 1250, 1251 |
| EcoO65I | GGTNACC | 1 cut(s) | 1025 |
| EcoRII | CCWGG | 3 cut(s) | 201, 504, 618 |
| EcoT14I | CCWWGG | 1 cut(s) | 759 |
| EcoT38I | GRGCYC | 2 cut(s) | 180, 1254 |
| EgeI | GGCGCC | 1 cut(s) | 523 |
| EheI | GGCGCC | 1 cut(s) | 523 |
| ErhI | CCWWGG | 1 cut(s) | 759 |
| Esp3I | CGTCTC | 2 cut(s) | 857, 1119 |
| FaeI | CATG | 9 cut(s) | 38, 88, 472, 578, 692, 707, 727, 1006, 1153 |
| FaqI | GGGAC | 4 cut(s) | 143, 574, 865, 1444 |
| FatI | CATG | 9 cut(s) | 34, 84, 468, 574, 688, 703, 723, 1002, 1149 |
| FauI | CCCGC | 2 cut(s) | 690, 798 |
| FauNDI | CATATG | 1 cut(s) | 634 |
| FbaI | TGATCA | 2 cut(s) | 16, 993 |
| FblI | GTMKAC | 2 cut(s) | 123, 1179 |
| Fnu4HI | GCNGC | 7 cut(s) | 64, 137, 483, 603, 614, 871, 891 |
| FokI | GGATG | 3 cut(s) | 570, 788, 842 |
| FriOI | GRGCYC | 2 cut(s) | 180, 1254 |
| Fsp4HI | GCNGC | 7 cut(s) | 64, 137, 483, 603, 614, 871, 891 |
| FspBI | CTAG | 3 cut(s) | 515, 674, 768 |
| GlaI | GCGC | 6 cut(s) | 135, 234, 319, 391, 523, 1330 |
| GluI | GCNGC | 7 cut(s) | 64, 137, 483, 603, 614, 871, 891 |
| GsuI | CTGGAG | 2 cut(s) | 488, 602 |
| HaeII | RGCGCY | 2 cut(s) | 321, 525 |
| HapII | CCGG | 9 cut(s) | 159, 387, 525, 1030, 1037, 1062, 1114, 1197, 1263 |
| HgaI | GACGC | 2 cut(s) | 140, 249 |
| HhaI | GCGC | 6 cut(s) | 136, 235, 320, 392, 524, 1331 |
| Hin1I | GRCGYC | 2 cut(s) | 522, 1490 |
| Hin1II | CATG | 9 cut(s) | 38, 88, 472, 578, 692, 707, 727, 1006, 1153 |
| Hin6I | GCGC | 6 cut(s) | 134, 233, 318, 390, 522, 1329 |
| HinP1I | GCGC | 6 cut(s) | 134, 233, 318, 390, 522, 1329 |
| HincII | GTYRAC | 2 cut(s) | 124, 905 |
| HindII | GTYRAC | 2 cut(s) | 124, 905 |
| HindIII | AAGCTT | 1 cut(s) | 1357 |
| HinfI | GANTC | 8 cut(s) | 185, 332, 670, 935, 1040, 1154, 1184, 1502 |
| HpaII | CCGG | 9 cut(s) | 159, 387, 525, 1030, 1037, 1062, 1114, 1197, 1263 |
| HphI | GGTGA | 3 cut(s) | 430, 1438, 1485 |
| Hpy166II | GTNNAC | 5 cut(s) | 124, 247, 905, 1180, 1469 |
| Hpy188I | TCNGA | 7 cut(s) | 94, 144, 588, 940, 1318, 1501, 1507 |
| Hpy188III | TCNNGA | 7 cut(s) | 47, 248, 674, 710, 850, 1037, 1062 |
| Hpy8I | GTNNAC | 5 cut(s) | 124, 247, 905, 1180, 1469 |
| Hpy99I | CGWCG | 7 cut(s) | 148, 167, 229, 232, 280, 283, 592 |
| HpyAV | CCTTC | 4 cut(s) | 200, 331, 512, 766 |
| HpyCH4III | ACNGT | 3 cut(s) | 461, 909, 957 |
| HpyCH4IV | ACGT | 3 cut(s) | 275, 594, 1490 |
| HpyCH4V | TGCA | 4 cut(s) | 63, 754, 1002, 1210 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 324, 665, 890 |
| HpyF3I | CTNAG | 8 cut(s) | 213, 375, 495, 797, 988, 1171, 1228, 1498 |
| HpySE526I | ACGT | 3 cut(s) | 275, 594, 1490 |
| Hsp92I | GRCGYC | 2 cut(s) | 522, 1490 |
| Hsp92II | CATG | 9 cut(s) | 38, 88, 472, 578, 692, 707, 727, 1006, 1153 |
| HspAI | GCGC | 6 cut(s) | 134, 233, 318, 390, 522, 1329 |
| KasI | GGCGCC | 1 cut(s) | 521 |
| KflI | GGGWCCC | 1 cut(s) | 561 |
| Kpn2I | TCCGGA | 2 cut(s) | 1036, 1061 |
| KroI | GCCGGC | 2 cut(s) | 158, 1196 |
| KroNI | GCCGGC | 2 cut(s) | 160, 1198 |
| Ksp22I | TGATCA | 2 cut(s) | 16, 993 |
| LmnI | GCTCC | 3 cut(s) | 621, 1064, 1389 |
| Lsp1109I | GCAGC | 5 cut(s) | 75, 123, 494, 589, 600 |
| LweI | GCATC | 3 cut(s) | 285, 741, 802 |
| MaeI | CTAG | 3 cut(s) | 515, 674, 768 |
| MaeII | ACGT | 3 cut(s) | 275, 594, 1490 |
| MaeIII | GTNAC | 3 cut(s) | 1025, 1090, 1491 |
| MboII | GAAGA | 4 cut(s) | 317, 320, 1115, 1118 |
| MfeI | CAATTG | 2 cut(s) | 897, 997 |
| MflI | RGATCY | 2 cut(s) | 406, 732 |
| MhlI | GDGCHC | 4 cut(s) | 180, 651, 1222, 1254 |
| MlsI | TGGCCA | 1 cut(s) | 11 |
| MluCI | AATT | 5 cut(s) | 251, 288, 897, 997, 1516 |
| MluNI | TGGCCA | 1 cut(s) | 11 |
| Mly113I | GGCGCC | 1 cut(s) | 522 |
| MlyI | GAGTC | 4 cut(s) | 194, 326, 1148, 1178 |
| MmeI | TCCRAC | 6 cut(s) | 167, 476, 611, 912, 1296, 1433 |
| Mox20I | TGGCCA | 1 cut(s) | 11 |
| MreI | CGCCGGCG | 1 cut(s) | 158 |
| MroI | TCCGGA | 2 cut(s) | 1036, 1061 |
| MroNI | GCCGGC | 2 cut(s) | 158, 1196 |
| MscI | TGGCCA | 1 cut(s) | 11 |
| MseI | TTAA | 3 cut(s) | 639, 1341, 1401 |
| Msp20I | TGGCCA | 1 cut(s) | 11 |
| MspA1I | CMGCKG | 2 cut(s) | 613, 1175 |
| MspI | CCGG | 9 cut(s) | 159, 387, 525, 1030, 1037, 1062, 1114, 1197, 1263 |
| MspR9I | CCNGG | 5 cut(s) | 203, 506, 526, 620, 1264 |
| MunI | CAATTG | 2 cut(s) | 897, 997 |
| MvaI | CCWGG | 3 cut(s) | 203, 506, 620 |
| MvnI | CGCG | 2 cut(s) | 134, 1331 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 324, 665, 890 |
| NaeI | GCCGGC | 2 cut(s) | 160, 1198 |
| NarI | GGCGCC | 1 cut(s) | 522 |
| NciI | CCSGG | 2 cut(s) | 526, 1264 |
| NdeI | CATATG | 1 cut(s) | 634 |
| NgoMIV | GCCGGC | 2 cut(s) | 158, 1196 |
| NlaIII | CATG | 9 cut(s) | 38, 88, 472, 578, 692, 707, 727, 1006, 1153 |
| NmeAIII | GCCGAG | 1 cut(s) | 428 |
| NmuCI | GTSAC | 1 cut(s) | 1491 |
| NspI | RCATGY | 2 cut(s) | 38, 1006 |
| PaeI | GCATGC | 2 cut(s) | 38, 1006 |
| PaeR7I | CTCGAG | 1 cut(s) | 1190 |
| PceI | AGGCCT | 2 cut(s) | 758, 986 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 162, 171, 246, 812, 1188 |
| PdiI | GCCGGC | 2 cut(s) | 160, 1198 |
| PfeI | GAWTC | 4 cut(s) | 670, 935, 1040, 1502 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 709, 1022 |
| PfoI | TCCNGGA | 1 cut(s) | 618 |
| PinAI | ACCGGT | 1 cut(s) | 1029 |
| PkrI | GCNGC | 7 cut(s) | 65, 138, 484, 604, 615, 872, 892 |
| PleI | GAGTC | 4 cut(s) | 193, 326, 1148, 1178 |
| PluTI | GGCGCC | 1 cut(s) | 525 |
| PpsI | GAGTC | 4 cut(s) | 193, 326, 1148, 1178 |
| PpuMI | RGGWCCY | 1 cut(s) | 561 |
| Psp124BI | GAGCTC | 1 cut(s) | 180 |
| Psp5II | RGGWCCY | 1 cut(s) | 561 |
| Psp6I | CCWGG | 3 cut(s) | 201, 504, 618 |
| PspEI | GGTNACC | 1 cut(s) | 1025 |
| PspGI | CCWGG | 3 cut(s) | 201, 504, 618 |
| PspOMI | GGGCCC | 1 cut(s) | 1250 |
| PspPPI | RGGWCCY | 1 cut(s) | 561 |
| PspXI | VCTCGAGB | 1 cut(s) | 1190 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1505 |
| PsuI | RGATCY | 2 cut(s) | 406, 732 |
| PvuII | CAGCTG | 2 cut(s) | 613, 1175 |
| RsaI | GTAC | 3 cut(s) | 104, 463, 1163 |
| RsaNI | GTAC | 3 cut(s) | 103, 462, 1162 |
| SacI | GAGCTC | 1 cut(s) | 180 |
| SalI | GTCGAC | 1 cut(s) | 122 |
| SaqAI | TTAA | 3 cut(s) | 639, 1341, 1401 |
| SatI | GCNGC | 7 cut(s) | 64, 137, 483, 603, 614, 871, 891 |
| SchI | GAGTC | 4 cut(s) | 194, 326, 1148, 1178 |
| ScrFI | CCNGG | 5 cut(s) | 203, 506, 526, 620, 1264 |
| SduI | GDGCHC | 4 cut(s) | 180, 651, 1222, 1254 |
| SfaNI | GCATC | 3 cut(s) | 285, 741, 802 |
| SfoI | GGCGCC | 1 cut(s) | 523 |
| Sfr274I | CTCGAG | 1 cut(s) | 1190 |
| SgrAI | CRCCGGYG | 1 cut(s) | 158 |
| SinI | GGWCC | 8 cut(s) | 148, 199, 352, 561, 685, 700, 852, 1111 |
| SlaI | CTCGAG | 1 cut(s) | 1190 |
| SmlI | CTYRAG | 3 cut(s) | 434, 965, 1190 |
| SmoI | CTYRAG | 3 cut(s) | 434, 965, 1190 |
| SphI | GCATGC | 2 cut(s) | 38, 1006 |
| Sse9I | AATT | 5 cut(s) | 251, 288, 897, 997, 1516 |
| SseBI | AGGCCT | 2 cut(s) | 758, 986 |
| SsiI | CCGC | 7 cut(s) | 368, 697, 791, 871, 882, 891, 1331 |
| SspDI | GGCGCC | 1 cut(s) | 521 |
| SspMI | CTAG | 3 cut(s) | 515, 674, 768 |
| SstI | GAGCTC | 1 cut(s) | 180 |
| StuI | AGGCCT | 2 cut(s) | 758, 986 |
| StyD4I | CCNGG | 5 cut(s) | 201, 504, 524, 618, 1262 |
| StyI | CCWWGG | 1 cut(s) | 759 |
| TaaI | ACNGT | 3 cut(s) | 461, 909, 957 |
| TaiI | ACGT | 3 cut(s) | 278, 597, 1493 |
| TaqI | TCGA | 8 cut(s) | 42, 123, 188, 335, 815, 952, 1043, 1191 |
| TasI | AATT | 5 cut(s) | 251, 288, 897, 997, 1516 |
| TauI | GCSGC | 2 cut(s) | 873, 893 |
| TfiI | GAWTC | 4 cut(s) | 670, 935, 1040, 1502 |
| Tru1I | TTAA | 3 cut(s) | 639, 1341, 1401 |
| Tru9I | TTAA | 3 cut(s) | 639, 1341, 1401 |
| TscAI | CASTG | 2 cut(s) | 104, 217 |
| TseFI | GTSAC | 1 cut(s) | 1491 |
| TseI | GCWGC | 5 cut(s) | 63, 136, 482, 602, 613 |
| Tsp45I | GTSAC | 1 cut(s) | 1491 |
| TspDTI | ATGAA | 2 cut(s) | 908, 1138 |
| TspGWI | ACGGA | 5 cut(s) | 161, 317, 327, 605, 1143 |
| TspRI | CASTG | 2 cut(s) | 104, 217 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 709, 1022 |
| VpaK11BI | GGWCC | 8 cut(s) | 148, 199, 352, 561, 685, 700, 852, 1111 |
| XbaI | TCTAGA | 1 cut(s) | 673 |
| XceI | RCATGY | 2 cut(s) | 38, 1006 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 572, 1297 |
| XhoI | CTCGAG | 1 cut(s) | 1190 |
| XmiI | GTMKAC | 2 cut(s) | 123, 1179 |
| XspI | CTAG | 3 cut(s) | 515, 674, 768 |
| ZraI | GACGTC | 1 cut(s) | 1491 |