Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015200

Physical Location & Seq

Genomic Coordinates Forward (+)

56186491 .. 56192421

Gene Structure 5931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG364800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGACAGAGTTACTCATGCTAAGCTCAGCTATGGAGCTCGAGCTCGAGCTCGACCTCTCCGGCTGCAGCACTGAAACCACAAGCACGACCAACACTGCCATTTCCCCTGACCAGTGGTACGATTGGTCTCCGGTCGTCGACTGGGAGTCTCTCGCTCCGATTGACCAGCTCGCCGGTGGTGGAGACTTCCACGAGCTGTTCGAGTCGATGATGGAGGGCCAAGACGGCGGCGATATGGACTCGCCGTCCTCCGAGACGGTTGAGGAAGTGTCAAACTCGTGTTACACCACGACGTCGTCGCAGTCGACGGACGTGACGATGCTGGAGGAAGGCGCGGCATCGAACGGCGAGGATTCGAAGGGGCTGAGATTGGTGCATCTGTTGATGGCGGCGGCGGAGGCGCTGACCGGCGCCAACAAGAGCAGAGATCTGGCTCGGGTGATATTGGTTCGGCTCAAGGAGTTGGTCTCCCCAACTGACGGTACTAACATGGAGAGGCTGGCGGCGTATTTTACCGAGGCGCTTCAGGGTTTGCTAGAAGGCGCCGGGGGTGTCAGCCACTCCAAGCACTTGTTCGGAAATGGGTCCCACAGCGACCACGGCCACCATCCGACGGACGTGATCGCGGCGTTTCAGCTACTTCAGGACATGTCGCCTTATGTCAAGTTTGGGCACTTCACGGCCAATCAGGCCATTTTGGAGGCTGTGGCCCATGACAGGAGGGTCCACATAGTGGACTATGACATCATGGAGGGAATCCAATGGGCCTCCTTGATGCAGGCCCTGGTGTCCAGGAAGGATGGCCCACCGACCCCACATCTTAGGATCACTGCTTTGTCGCGAGGTGGGAGCGGCCGGAGGTCGATAGGGACCGTCCAAGAGACCGGTCGTCGTCTCACGGCGTTTGCCACGTCCATTGGTCAGCCGTTTTCGTTTCATCAATGTAGGTTGGATTCGGACGAGACATTTCGACCGTCGGCTCTAAAGTTGGTTAAGGGCGAGGCCTTGGTAATAAACTGCATGCTGAACCTTCCACACTTTAGCTATCGATCCCCGGATTCGATTGCTTCATTTTTATCCGGAGCCAAGACCCTAAACCCGAGACTGGTAACTTTGGTTGAAGAAGAGGTTAGGCCTGCCGGAGACGGTGGCTTTGTGGCCCGCTTCATGGACTCACTGTATCACTACTCGGCTGTCTACGACTCGCTCGAGGCCGGCTTTCCAATGCAGAGGCGGGCTCGAGAATTAGTGGAGAGAGTGTTCTTGGGACCCCGAATAGCTGGGTCGTTGGCTCGTATCTATCGGGCTCACGGAGAGGTAGGTTGCTCTTGGTGGGAGTGGTTAGGTGCGCATGTTATTAGACGTCACCAAAAAAGTGGTCCTGTCGACGACTGCTCAGAGCCTCGGACATATTTGCTACCGAAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

476

Amino Acids

52.19

Weight (kDa)

5.28

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	124 - 436	2.8e-86	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08250
fragaria_vesca	FvH4_2g26540
malus_domestica	MD08G1167600.v1.1 MD15G1353200.v1.1
prunus_persica	Prupe.1G501500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295411
rosa_laevigata	RLG00000011806
rosa_multiflora	Rmu_co8465007.1_g000001 Rmu_sc0003058.1_g000004
rosa_roxburghii	Rroxscaffold_7G00172520
rosa_rugosa	Rorug06G0250400
rosa_samantha	Rh6AG363800 Rh6BG372000 Rh6CG378400 Rh6DG364800
rosa_wichuraiana	Rw6G031760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
AatII	GACGTC	2 cut(s)	296, 1366
Acc16I	TGCGCA	1 cut(s)	1350
AccB1I	GGYRCC	2 cut(s)	410, 542
AccB7I	CCANNNNNTGG	1 cut(s)	733
AccBSI	CCGCTC	1 cut(s)	852
AccI	GTMKAC	4 cut(s)	138, 305, 1197, 1386
AccII	CGCG	3 cut(s)	335, 626, 841
AccIII	TCCGGA	1 cut(s)	1079
AclWI	GGATC	2 cut(s)	833, 1044
AcoI	YGGCCR	3 cut(s)	601, 681, 853
AcuI	CTGAAG	2 cut(s)	509, 626
AcyI	GRCGYC	4 cut(s)	293, 411, 543, 1363
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	2 cut(s)	119, 484
AfiI	CCNNNNNNNGG	6 cut(s)	479, 613, 717, 733, 1105, 1168
AflIII	ACRYGT	1 cut(s)	648
AgeI	ACCGGT	1 cut(s)	884
AgsI	TTSAA	1 cut(s)	1121
AhdI	GACNNNNNGTC	3 cut(s)	145, 244, 888
AjiI	CACGTC	3 cut(s)	313, 619, 912
AjnI	CCWGG	2 cut(s)	783, 791
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AloI	GAACNNNNNNTCC	2 cut(s)	1244, 1276
Alw21I	GWGCWC	3 cut(s)	39, 45, 51
AlwI	GGATC	2 cut(s)	833, 1044
AlwNI	CAGNNNCTG	1 cut(s)	784
Ama87I	CYCGRG	6 cut(s)	38, 44, 435, 1099, 1208, 1239
Aor13HI	TCCGGA	1 cut(s)	1079
ApeKI	GCWGC	2 cut(s)	63, 66
ArsI	GACNNNNNNTTYG	4 cut(s)	1136, 1168, 1363, 1395
AsiGI	ACCGGT	1 cut(s)	884
AspLEI	GCGC	6 cut(s)	335, 403, 413, 523, 545, 1351
AsuC2I	CCSGG	2 cut(s)	547, 1055
AsuHPI	GGTGA	2 cut(s)	451, 1358
AsuII	TTCGAA	1 cut(s)	356
AvaI	CYCGRG	6 cut(s)	38, 44, 435, 1099, 1208, 1239
AvaII	GGWCC	5 cut(s)	585, 724, 870, 1268, 1379
BaeGI	GKGCMC	1 cut(s)	675
BanI	GGYRCC	2 cut(s)	410, 542
BanII	GRGCYC	5 cut(s)	39, 45, 51, 1240, 1309
BauI	CACGAG	2 cut(s)	191, 277
Bbv12I	GWGCWC	3 cut(s)	39, 45, 51
BbvI	GCAGC	2 cut(s)	50, 78
BccI	CCATC	4 cut(s)	205, 379, 615, 794
BceAI	ACGGC	7 cut(s)	229, 241, 361, 616, 696, 910, 915
BciT130I	CCWGG	2 cut(s)	785, 793
BcnI	CCSGG	2 cut(s)	547, 1055
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	64
BfoI	RGCGCY	4 cut(s)	404, 414, 524, 546
BglI	GCCNNNNNGGC	2 cut(s)	225, 689
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	9 cut(s)	64, 67, 229, 336, 390, 393, 504, 627, 853
BlpI	GCTNAGC	2 cut(s)	20, 25
BlsI	GCNGC	9 cut(s)	65, 68, 230, 337, 391, 394, 505, 628, 854
Bme1390I	CCNGG	4 cut(s)	547, 785, 793, 1055
Bme18I	GGWCC	5 cut(s)	585, 724, 870, 1268, 1379
BmeRI	GACNNNNNGTC	3 cut(s)	145, 244, 888
BmeT110I	CYCGRG	6 cut(s)	38, 44, 435, 1099, 1208, 1239
BmgBI	CACGTC	3 cut(s)	313, 619, 912
BmiI	GGNNCC	9 cut(s)	412, 544, 586, 587, 725, 871, 1084, 1269, 1270
BmrFI	CCNGG	4 cut(s)	547, 785, 793, 1055
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	4 cut(s)	309, 347, 385, 765
BmuI	ACTGGG	1 cut(s)	151
BplI	GAGNNNNNCTC	4 cut(s)	452, 484, 1222, 1254
BpmI	CTGGAG	1 cut(s)	344
Bpu1102I	GCTNAGC	2 cut(s)	20, 25
Bpu14I	TTCGAA	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	547, 1055
Bsa29I	ATCGAT	1 cut(s)	1048
BsaHI	GRCGYC	4 cut(s)	293, 411, 543, 1363
BsaI	GGTCTC	3 cut(s)	132, 472, 875
BsaJI	CCNNGG	7 cut(s)	516, 546, 598, 783, 1005, 1053, 1403
BsaWI	WCCGGW	3 cut(s)	130, 884, 1079
BsaXI	ACNNNNNCTCC	2 cut(s)	1244, 1274
Bsc4I	CCNNNNNNNGG	6 cut(s)	479, 613, 717, 733, 1105, 1168
Bse118I	RCCGGY	4 cut(s)	173, 407, 884, 1214
Bse1I	ACTGG	3 cut(s)	112, 146, 1110
BseAI	TCCGGA	1 cut(s)	1079
BseBI	CCWGG	2 cut(s)	785, 793
BseCI	ATCGAT	1 cut(s)	1048
BseDI	CCNNGG	7 cut(s)	516, 546, 598, 783, 1005, 1053, 1403
BseGI	GGATG	2 cut(s)	607, 805
BseLI	CCNNNNNNNGG	6 cut(s)	479, 613, 717, 733, 1105, 1168
BseMII	CTCAG	3 cut(s)	39, 356, 1410
BseNI	ACTGG	3 cut(s)	112, 146, 1110
BseSI	GKGCMC	1 cut(s)	675
BseX3I	CGGCCG	1 cut(s)	853
BseXI	GCAGC	2 cut(s)	50, 78
BseYI	CCCAGC	1 cut(s)	1280
Bsh1236I	CGCG	3 cut(s)	335, 626, 841
Bsh1285I	CGRYCG	4 cut(s)	135, 856, 889, 974
BshNI	GGYRCC	2 cut(s)	410, 542
BshTI	ACCGGT	1 cut(s)	884
BshVI	ATCGAT	1 cut(s)	1048
BsiEI	CGRYCG	4 cut(s)	135, 856, 889, 974
BsiHKAI	GWGCWC	3 cut(s)	39, 45, 51
BsiHKCI	CYCGRG	6 cut(s)	38, 44, 435, 1099, 1208, 1239
BslFI	GGGAC	3 cut(s)	571, 883, 1281
BslI	CCNNNNNNNGG	6 cut(s)	479, 613, 717, 733, 1105, 1168
BsmBI	CGTCTC	3 cut(s)	248, 899, 1137
BsmFI	GGGAC	3 cut(s)	571, 883, 1281
Bso31I	GGTCTC	3 cut(s)	132, 472, 875
BsoBI	CYCGRG	6 cut(s)	38, 44, 435, 1099, 1208, 1239
Bsp119I	TTCGAA	1 cut(s)	356
Bsp1286I	GDGCHC	6 cut(s)	39, 45, 51, 675, 1240, 1309
Bsp13I	TCCGGA	1 cut(s)	1079
Bsp143I	GATC	4 cut(s)	427, 621, 825, 1049
Bsp1720I	GCTNAGC	2 cut(s)	20, 25
Bsp68I	TCGCGA	1 cut(s)	841
BspCNI	CTCAG	3 cut(s)	38, 357, 1409
BspDI	ATCGAT	1 cut(s)	1048
BspEI	TCCGGA	1 cut(s)	1079
BspFNI	CGCG	3 cut(s)	335, 626, 841
BspLI	GGNNCC	9 cut(s)	412, 544, 586, 587, 725, 871, 1084, 1269, 1270
BspMAI	CTGCAG	1 cut(s)	68
BspPI	GGATC	2 cut(s)	833, 1044
BspT104I	TTCGAA	1 cut(s)	356
BspT107I	GGYRCC	2 cut(s)	410, 542
BspTNI	GGTCTC	3 cut(s)	132, 472, 875
BsrBI	CCGCTC	1 cut(s)	852
BsrFI	RCCGGY	4 cut(s)	173, 407, 884, 1214
BsrI	ACTGG	3 cut(s)	112, 146, 1110
BssAI	RCCGGY	4 cut(s)	173, 407, 884, 1214
BssECI	CCNNGG	7 cut(s)	516, 546, 598, 783, 1005, 1053, 1403
BssMI	GATC	4 cut(s)	427, 621, 825, 1049
BssNI	GRCGYC	4 cut(s)	293, 411, 543, 1363
BssSI	CACGAG	2 cut(s)	191, 277
BssT1I	CCWWGG	1 cut(s)	1005
Bst2BI	CACGAG	2 cut(s)	191, 277
Bst2UI	CCWGG	2 cut(s)	785, 793
Bst4CI	ACNGT	6 cut(s)	259, 482, 874, 975, 1148, 1179
Bst6I	CTCTTC	1 cut(s)	1119
BstACI	GRCGYC	4 cut(s)	293, 411, 543, 1363
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	8 cut(s)	171, 501, 780, 1022, 1137, 1162, 1216, 1236
BstDEI	CTNAG	5 cut(s)	20, 25, 365, 821, 1396
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	607, 805
BstFNI	CGCG	3 cut(s)	335, 626, 841
BstH2I	RGCGCY	4 cut(s)	404, 414, 524, 546
BstHHI	GCGC	6 cut(s)	335, 403, 413, 523, 545, 1351
BstKTI	GATC	4 cut(s)	430, 624, 828, 1052
BstMBI	GATC	4 cut(s)	427, 621, 825, 1049
BstMCI	CGRYCG	4 cut(s)	135, 856, 889, 974
BstMWI	GCNNNNNNNGC	5 cut(s)	225, 398, 600, 689, 1423
BstNI	CCWGG	2 cut(s)	785, 793
BstNSI	RCATGY	3 cut(s)	652, 1024, 1355
BstSCI	CCNGG	4 cut(s)	545, 783, 791, 1053
BstSFI	CTRYAG	1 cut(s)	64
BstSLI	GKGCMC	1 cut(s)	675
BstUI	CGCG	3 cut(s)	335, 626, 841
BstV1I	GCAGC	2 cut(s)	50, 78
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	1376
BstYI	RGATCY	1 cut(s)	427
BstZI	CGGCCG	1 cut(s)	853
Bsu15I	ATCGAT	1 cut(s)	1048
BsuTUI	ATCGAT	1 cut(s)	1048
BtgI	CCRYGG	1 cut(s)	598
BtrI	CACGTC	3 cut(s)	313, 619, 912
BtsCI	GGATG	2 cut(s)	607, 805
BtsI	GCAGTG	2 cut(s)	93, 828
BtsIMutI	CAGTG	5 cut(s)	69, 93, 119, 828, 1175
BtuMI	TCGCGA	1 cut(s)	841
Cac8I	GCNNGC	8 cut(s)	171, 501, 780, 1022, 1137, 1162, 1216, 1236
CaiI	CAGNNNCTG	1 cut(s)	784
CfoI	GCGC	6 cut(s)	335, 403, 413, 523, 545, 1351
Cfr10I	RCCGGY	4 cut(s)	173, 407, 884, 1214
ClaI	ATCGAT	1 cut(s)	1048
Csp6I	GTAC	2 cut(s)	118, 483
CspAI	ACCGGT	1 cut(s)	884
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	8 cut(s)	16, 490, 649, 713, 748, 1021, 1168, 1352
CviQI	GTAC	2 cut(s)	118, 483
DdeI	CTNAG	5 cut(s)	20, 25, 365, 821, 1396
DinI	GGCGCC	2 cut(s)	412, 544
DpnI	GATC	4 cut(s)	429, 623, 827, 1051
DpnII	GATC	4 cut(s)	427, 621, 825, 1049
DraIII	CACNNNGTG	1 cut(s)	733
DrdI	GACNNNNNNGTC	1 cut(s)	722
DriI	GACNNNNNGTC	3 cut(s)	145, 244, 888
DseDI	GACNNNNNNGTC	1 cut(s)	722
EaeI	YGGCCR	3 cut(s)	601, 681, 853
EagI	CGGCCG	1 cut(s)	853
Eam1104I	CTCTTC	1 cut(s)	1119
Eam1105I	GACNNNNNGTC	3 cut(s)	145, 244, 888
EarI	CTCTTC	1 cut(s)	1119
EciI	GGCGGA	1 cut(s)	410
Ecl136II	GAGCTC	3 cut(s)	37, 43, 49
EclXI	CGGCCG	1 cut(s)	853
Eco130I	CCWWGG	1 cut(s)	1005
Eco147I	AGGCCT	2 cut(s)	1004, 1135
Eco24I	GRGCYC	5 cut(s)	39, 45, 51, 1240, 1309
Eco31I	GGTCTC	3 cut(s)	132, 472, 875
Eco47I	GGWCC	5 cut(s)	585, 724, 870, 1268, 1379
Eco52I	CGGCCG	1 cut(s)	853
Eco53kI	GAGCTC	3 cut(s)	37, 43, 49
Eco57I	CTGAAG	2 cut(s)	509, 626
Eco88I	CYCGRG	6 cut(s)	38, 44, 435, 1099, 1208, 1239
EcoICRI	GAGCTC	3 cut(s)	37, 43, 49
EcoO109I	RGGNCCY	3 cut(s)	585, 781, 1268
EcoRII	CCWGG	2 cut(s)	783, 791
EcoT14I	CCWWGG	1 cut(s)	1005
EcoT38I	GRGCYC	5 cut(s)	39, 45, 51, 1240, 1309
EgeI	GGCGCC	2 cut(s)	412, 544
EheI	GGCGCC	2 cut(s)	412, 544
ErhI	CCWWGG	1 cut(s)	1005
Esp3I	CGTCTC	3 cut(s)	248, 899, 1137
FaeI	CATG	8 cut(s)	19, 493, 652, 716, 751, 1024, 1171, 1355
FaqI	GGGAC	3 cut(s)	571, 883, 1281
FatI	CATG	8 cut(s)	15, 489, 648, 712, 747, 1020, 1167, 1351
FauI	CCCGC	2 cut(s)	1169, 1227
FblI	GTMKAC	4 cut(s)	138, 305, 1197, 1386
Fnu4HI	GCNGC	9 cut(s)	64, 67, 229, 336, 390, 393, 504, 627, 853
FokI	GGATG	2 cut(s)	594, 812
FriOI	GRGCYC	5 cut(s)	39, 45, 51, 1240, 1309
Fsp4HI	GCNGC	9 cut(s)	64, 67, 229, 336, 390, 393, 504, 627, 853
FspAI	RTGCGCAY	1 cut(s)	1350
FspBI	CTAG	1 cut(s)	536
FspI	TGCGCA	1 cut(s)	1350
GlaI	GCGC	6 cut(s)	334, 402, 412, 522, 544, 1350
GluI	GCNGC	9 cut(s)	64, 67, 229, 336, 390, 393, 504, 627, 853
GsaI	CCCAGC	1 cut(s)	1284
GsuI	CTGGAG	1 cut(s)	344
HaeII	RGCGCY	4 cut(s)	404, 414, 524, 546
HhaI	GCGC	6 cut(s)	335, 403, 413, 523, 545, 1351
Hin1I	GRCGYC	4 cut(s)	293, 411, 543, 1363
Hin1II	CATG	8 cut(s)	19, 493, 652, 716, 751, 1024, 1171, 1355
Hin6I	GCGC	6 cut(s)	333, 401, 411, 521, 543, 1349
HinP1I	GCGC	6 cut(s)	333, 401, 411, 521, 543, 1349
HincII	GTYRAC	3 cut(s)	139, 306, 1387
HindII	GTYRAC	3 cut(s)	139, 306, 1387
HinfI	GANTC	9 cut(s)	146, 203, 239, 353, 756, 953, 1058, 1172, 1202
HphI	GGTGA	2 cut(s)	451, 1358
Hpy166II	GTNNAC	6 cut(s)	139, 306, 727, 736, 1198, 1387
Hpy188I	TCNGA	7 cut(s)	159, 253, 578, 612, 958, 1399, 1407
Hpy188III	TCNNGA	4 cut(s)	644, 840, 1080, 1241
Hpy8I	GTNNAC	6 cut(s)	139, 306, 727, 736, 1198, 1387
Hpy99I	CGWCG	9 cut(s)	140, 295, 298, 301, 310, 616, 894, 979, 1391
HpyAV	CCTTC	5 cut(s)	323, 352, 533, 790, 1040
HpyCH4III	ACNGT	6 cut(s)	259, 482, 874, 975, 1148, 1179
HpyCH4IV	ACGT	5 cut(s)	293, 312, 618, 911, 1363
HpyCH4V	TGCA	5 cut(s)	66, 376, 778, 1020, 1228
HpyF10VI	GCNNNNNNNGC	5 cut(s)	225, 398, 600, 689, 1423
HpyF3I	CTNAG	5 cut(s)	20, 25, 365, 821, 1396
HpySE526I	ACGT	5 cut(s)	293, 312, 618, 911, 1363
Hsp92I	GRCGYC	4 cut(s)	293, 411, 543, 1363
Hsp92II	CATG	8 cut(s)	19, 493, 652, 716, 751, 1024, 1171, 1355
HspAI	GCGC	6 cut(s)	333, 401, 411, 521, 543, 1349
KasI	GGCGCC	2 cut(s)	410, 542
KflI	GGGWCCC	2 cut(s)	585, 1268
Kpn2I	TCCGGA	1 cut(s)	1079
KroI	GCCGGC	1 cut(s)	1214
KroNI	GCCGGC	1 cut(s)	1216
Kzo9I	GATC	4 cut(s)	427, 621, 825, 1049
LmnI	GCTCC	4 cut(s)	34, 160, 849, 1082
Lsp1109I	GCAGC	2 cut(s)	50, 78
LweI	GCATC	4 cut(s)	309, 347, 385, 765
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	5 cut(s)	293, 312, 618, 911, 1363
MaeIII	GTNAC	5 cut(s)	9, 281, 313, 1108, 1364
MalI	GATC	4 cut(s)	429, 623, 827, 1051
MbiI	CCGCTC	1 cut(s)	852
MboI	GATC	4 cut(s)	427, 621, 825, 1049
MboII	GAAGA	2 cut(s)	1133, 1136
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	6 cut(s)	39, 45, 51, 675, 1240, 1309
MluCI	AATT	1 cut(s)	1244
Mly113I	GGCGCC	2 cut(s)	411, 543
MlyI	GAGTC	5 cut(s)	155, 212, 233, 1166, 1196
MmeI	TCCRAC	2 cut(s)	635, 930
MroI	TCCGGA	1 cut(s)	1079
MroNI	GCCGGC	1 cut(s)	1214
MseI	TTAA	2 cut(s)	993, 1429
MspR9I	CCNGG	4 cut(s)	547, 785, 793, 1055
MvaI	CCWGG	2 cut(s)	785, 793
MvnI	CGCG	3 cut(s)	335, 626, 841
MwoI	GCNNNNNNNGC	5 cut(s)	225, 398, 600, 689, 1423
NaeI	GCCGGC	1 cut(s)	1216
NarI	GGCGCC	2 cut(s)	411, 543
NciI	CCSGG	2 cut(s)	547, 1055
NdeII	GATC	4 cut(s)	427, 621, 825, 1049
NgoMIV	GCCGGC	1 cut(s)	1214
NlaIII	CATG	8 cut(s)	19, 493, 652, 716, 751, 1024, 1171, 1355
NlaIV	GGNNCC	9 cut(s)	412, 544, 586, 587, 725, 871, 1084, 1269, 1270
NmeAIII	GCCGAG	1 cut(s)	1169
NmuCI	GTSAC	2 cut(s)	313, 1364
NruI	TCGCGA	1 cut(s)	841
NsbI	TGCGCA	1 cut(s)	1350
NspI	RCATGY	3 cut(s)	652, 1024, 1355
NspV	TTCGAA	1 cut(s)	356
PaeI	GCATGC	1 cut(s)	1024
PaeR7I	CTCGAG	4 cut(s)	38, 44, 1208, 1239
PceI	AGGCCT	2 cut(s)	1004, 1135
PciI	ACATGT	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	4 cut(s)	198, 302, 314, 1206
PdiI	GCCGGC	1 cut(s)	1216
PfeI	GAWTC	4 cut(s)	353, 756, 953, 1058
PflFI	GACNNNGTC	1 cut(s)	295
PflMI	CCANNNNNTGG	1 cut(s)	733
PfoI	TCCNGGA	1 cut(s)	791
PinAI	ACCGGT	1 cut(s)	884
PkrI	GCNGC	9 cut(s)	65, 68, 230, 337, 391, 394, 505, 628, 854
PleI	GAGTC	5 cut(s)	154, 211, 233, 1166, 1196
PluTI	GGCGCC	2 cut(s)	414, 546
PpsI	GAGTC	5 cut(s)	154, 211, 233, 1166, 1196
PpuMI	RGGWCCY	2 cut(s)	585, 1268
PscI	ACATGT	1 cut(s)	648
Psp124BI	GAGCTC	3 cut(s)	39, 45, 51
Psp5II	RGGWCCY	2 cut(s)	585, 1268
Psp6I	CCWGG	2 cut(s)	783, 791
PspFI	CCCAGC	1 cut(s)	1280
PspGI	CCWGG	2 cut(s)	783, 791
PspN4I	GGNNCC	9 cut(s)	412, 544, 586, 587, 725, 871, 1084, 1269, 1270
PspPPI	RGGWCCY	2 cut(s)	585, 1268
PspXI	VCTCGAGB	3 cut(s)	38, 44, 1208
PstI	CTGCAG	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	784
PsuI	RGATCY	1 cut(s)	427
PsyI	GACNNNGTC	1 cut(s)	295
RruI	TCGCGA	1 cut(s)	841
RsaI	GTAC	2 cut(s)	119, 484
RsaNI	GTAC	2 cut(s)	118, 483
SacI	GAGCTC	3 cut(s)	39, 45, 51
SalI	GTCGAC	3 cut(s)	137, 304, 1385
SaqAI	TTAA	2 cut(s)	993, 1429
SatI	GCNGC	9 cut(s)	64, 67, 229, 336, 390, 393, 504, 627, 853
Sau3AI	GATC	4 cut(s)	427, 621, 825, 1049
SchI	GAGTC	5 cut(s)	155, 212, 233, 1166, 1196
ScrFI	CCNGG	4 cut(s)	547, 785, 793, 1055
SduI	GDGCHC	6 cut(s)	39, 45, 51, 675, 1240, 1309
SfaNI	GCATC	4 cut(s)	309, 347, 385, 765
SfcI	CTRYAG	1 cut(s)	64
SfiI	GGCCNNNNNGGCC	1 cut(s)	689
SfoI	GGCGCC	2 cut(s)	412, 544
Sfr274I	CTCGAG	4 cut(s)	38, 44, 1208, 1239
SfuI	TTCGAA	1 cut(s)	356
SgrAI	CRCCGGYG	1 cut(s)	173
SinI	GGWCC	5 cut(s)	585, 724, 870, 1268, 1379
SlaI	CTCGAG	4 cut(s)	38, 44, 1208, 1239
SmlI	CTYRAG	5 cut(s)	38, 44, 455, 1208, 1239
SmoI	CTYRAG	5 cut(s)	38, 44, 455, 1208, 1239
SphI	GCATGC	1 cut(s)	1024
Sse9I	AATT	1 cut(s)	1244
SseBI	AGGCCT	2 cut(s)	1004, 1135
SspDI	GGCGCC	2 cut(s)	410, 542
SspMI	CTAG	1 cut(s)	536
SstI	GAGCTC	3 cut(s)	39, 45, 51
StuI	AGGCCT	2 cut(s)	1004, 1135
StyD4I	CCNGG	4 cut(s)	545, 783, 791, 1053
StyI	CCWWGG	1 cut(s)	1005
TaaI	ACNGT	6 cut(s)	259, 482, 874, 975, 1148, 1179
TaiI	ACGT	5 cut(s)	296, 315, 621, 914, 1366
TasI	AATT	1 cut(s)	1244
TauI	GCSGC	7 cut(s)	231, 338, 392, 395, 506, 629, 855
TfiI	GAWTC	4 cut(s)	353, 756, 953, 1058
Tru1I	TTAA	2 cut(s)	993, 1429
Tru9I	TTAA	2 cut(s)	993, 1429
TscAI	CASTG	5 cut(s)	76, 100, 119, 835, 1182
TseFI	GTSAC	2 cut(s)	313, 1364
TseI	GCWGC	2 cut(s)	63, 66
Tsp45I	GTSAC	2 cut(s)	313, 1364
TspDTI	ATGAA	3 cut(s)	926, 1059, 1156
TspGWI	ACGGA	3 cut(s)	323, 629, 1326
TspRI	CASTG	5 cut(s)	76, 100, 119, 835, 1182
Tth111I	GACNNNGTC	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	733
VpaK11BI	GGWCC	5 cut(s)	585, 724, 870, 1268, 1379
XceI	RCATGY	3 cut(s)	652, 1024, 1355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XhoI	CTCGAG	4 cut(s)	38, 44, 1208, 1239
XmiI	GTMKAC	4 cut(s)	138, 305, 1197, 1386
XspI	CTAG	1 cut(s)	536
ZraI	GACGTC	2 cut(s)	294, 1364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.