Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0015200

Physical Location & Seq

Genomic Coordinates Forward (+)

56510268 .. 56511785

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG378400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGGAGCTTGAGCTCGACCTCGACCTCGACCTCTCCGGCTGCAGCACTGAAACCACAAGCACGACCAACACGGCCATTTCCCCAGACCAGTGGTACGATTGGTCTCCGGTAGTCGACTGGGAGTCTCTCGCTCCGATTGACCAGCTCGCCGGCGGTGGAGACTTTCACGAGCTGATCGAGTCGATGATGGAGGGCCGAGACGGCGGCGAGATGGACTCGCCGTCGTCCGAGACCATTGAGGAAGCGTCAAACTCGTGTTACACCACGACGTCGTCGCAGTCGACGGACGTGACGATGCTGGAGGAAGGCGTGGCATCGAACGGCGAGGATTCGAAGGGGCTGAGATTGGTGCATCTGTTGATGGCGGCGGCGGAGGCGCTGACCGGCGCCAACAAGAGCAGAGATCTGGCTCGGGTGATATTGGTTCGGCTCAAGGAGTTGGTCTCCCCAACTGACGGTACTAACATGGAGAGGCTGGCGGCGTATTTTACCGAGGCGCTTCAGGGTTTGCTAGAAGGCGCCGGGGGTGTCAGCCACTCCAAGCATTTGTTCGGAAATGGGTCCCACCGCGAGCACGGTCACCATCCGACGACGGACGTGATGGCGGCGTTTCAGCTACTTCAGGACATGTCGCCCTATGTCAAGTTTGGGCACTTCACGGCCAATCAGGCCATTTTGGAGGCTGTGGCCCATGACAGGAGGGTCCACATAGTGGACTATGACATCATGGAGGGAATCCAATGGGCCTCCTTGATGCAGGCCTTGGTGTCCAGGAAGGATGGCCCACCGACCCCACATCTTAGGATCACTGCTTTGTCGCGAGGCGGGAGCTGCCGGAGGTCGATAGGGACCGTCCAAGAGACCGGTCGTCGTCTCACGGCGTTTGCCACGTCCATTGGTCAACCGTTTTCGTTTCATCAATGTAGGTTGGATTCGGACGAGACATTTCGACCGTCTGCTCTAAAGTTGGTTAAGGGCGAGGCCTTGGTAATAAACTGCATGCTGAACCTTCCACACTTTAGTTATCGATCCCCGGATTCGATTGCTTCCTTTTTATCTGGAGCGAAAACCCTAAACCCGAGACTGGTAACTTTGGTTGAAGAAGAGGTTAGGCCTGCCGGAGACGGTGGCTTTGTGGCCCGCTTCATGGACTCATTGTATCACTACTCGGCTGTCTACGACTCGCTCGAGGCCGGCTTCCCAATGCAGAGCCGGGCTCGAGAATTAGTGGAGAGAGTGTTCTTGGGACCCCGAATAGCTGGGTCGTTGGCTCGTATCTATCGGGCTCAAGGAGAGGTAGGCTGCTCTTGGTGGGAGTGGTTAGGTGCGATAGGGTTTAAGCCAATGCCAATAAGCTTTGCCAATCATTGTCAGGCAAAGCTTTTGTTGGGTCTTTTTAATGACGGTTATAGGGTGGAGGAGGTGGCAAATCATAGGTTGGTTTTAGGTTGGAAATCACGGTCCTTACTATCAGCTTCTATTTGGACTTCACCCCCACAATCTGATTTTGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

505

Amino Acids

55.42

Weight (kDa)

5.25

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	116 - 496	1.9e-104	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08250
fragaria_vesca	FvH4_2g26540
malus_domestica	MD08G1167600.v1.1 MD15G1353200.v1.1
prunus_persica	Prupe.1G501500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295411
rosa_laevigata	RLG00000011806
rosa_multiflora	Rmu_co8465007.1_g000001 Rmu_sc0003058.1_g000004
rosa_roxburghii	Rroxscaffold_7G00172520
rosa_rugosa	Rorug06G0250400
rosa_samantha	Rh6AG363800 Rh6BG372000 Rh6CG378400 Rh6DG364800
rosa_wichuraiana	Rw6G031760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	701
AatII	GACGTC	1 cut(s)	272
AccB1I	GGYRCC	2 cut(s)	386, 518
AccB7I	CCANNNNNTGG	1 cut(s)	712
AccI	GTMKAC	3 cut(s)	114, 281, 1176
AccII	CGCG	2 cut(s)	570, 820
AclWI	GGATC	2 cut(s)	812, 1023
AcoI	YGGCCR	2 cut(s)	72, 660
AcuI	CTGAAG	2 cut(s)	485, 605
AcyI	GRCGYC	3 cut(s)	269, 387, 519
AdeI	CACNNNGTG	1 cut(s)	712
AfaI	GTAC	2 cut(s)	95, 460
AfiI	CCNNNNNNNGG	5 cut(s)	455, 696, 712, 1084, 1147
AflIII	ACRYGT	1 cut(s)	627
AgeI	ACCGGT	1 cut(s)	863
AgsI	TTSAA	1 cut(s)	1100
AhdI	GACNNNNNGTC	3 cut(s)	121, 220, 867
AjiI	CACGTC	3 cut(s)	289, 598, 891
AjnI	CCWGG	1 cut(s)	770
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AloI	GAACNNNNNNTCC	2 cut(s)	1223, 1255
Alw21I	GWGCWC	2 cut(s)	15, 576
AlwI	GGATC	2 cut(s)	812, 1023
Ama87I	CYCGRG	4 cut(s)	411, 1078, 1187, 1218
ApeKI	GCWGC	4 cut(s)	39, 42, 831, 1302
ArsI	GACNNNNNNTTYG	2 cut(s)	1115, 1147
AsiGI	ACCGGT	1 cut(s)	863
AspLEI	GCGC	4 cut(s)	379, 389, 499, 521
AsuC2I	CCSGG	3 cut(s)	523, 1034, 1214
AsuHPI	GGTGA	3 cut(s)	427, 572, 1482
AsuII	TTCGAA	1 cut(s)	332
AvaI	CYCGRG	4 cut(s)	411, 1078, 1187, 1218
AvaII	GGWCC	5 cut(s)	561, 703, 849, 1247, 1461
BaeGI	GKGCMC	1 cut(s)	654
BanI	GGYRCC	2 cut(s)	386, 518
BanII	GRGCYC	3 cut(s)	15, 1219, 1288
BauI	CACGAG	2 cut(s)	167, 253
Bbv12I	GWGCWC	2 cut(s)	15, 576
BbvI	GCAGC	4 cut(s)	26, 54, 818, 1289
BccI	CCATC	6 cut(s)	181, 205, 355, 591, 595, 773
BceAI	ACGGC	6 cut(s)	87, 205, 217, 337, 675, 894
BciT130I	CCWGG	1 cut(s)	772
BcnI	CCSGG	3 cut(s)	523, 1034, 1214
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	40
BfoI	RGCGCY	4 cut(s)	380, 390, 500, 522
BglI	GCCNNNNNGGC	2 cut(s)	201, 668
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	9 cut(s)	40, 43, 205, 366, 369, 480, 606, 832, 1303
BlsI	GCNGC	9 cut(s)	41, 44, 206, 367, 370, 481, 607, 833, 1304
Bme1390I	CCNGG	4 cut(s)	523, 772, 1034, 1214
Bme18I	GGWCC	5 cut(s)	561, 703, 849, 1247, 1461
BmeRI	GACNNNNNGTC	3 cut(s)	121, 220, 867
BmeT110I	CYCGRG	4 cut(s)	411, 1078, 1187, 1218
BmgBI	CACGTC	3 cut(s)	289, 598, 891
BmiI	GGNNCC	8 cut(s)	388, 520, 562, 563, 704, 850, 1248, 1249
BmrFI	CCNGG	4 cut(s)	523, 772, 1034, 1214
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	4 cut(s)	285, 323, 361, 744
BmuI	ACTGGG	1 cut(s)	127
BplI	GAGNNNNNCTC	6 cut(s)	200, 232, 428, 460, 1201, 1233
BpmI	CTGGAG	2 cut(s)	320, 1080
Bpu14I	TTCGAA	1 cut(s)	332
BpuEI	CTTGAG	3 cut(s)	29, 416, 1272
BpuMI	CCSGG	3 cut(s)	523, 1034, 1214
Bsa29I	ATCGAT	1 cut(s)	1027
BsaHI	GRCGYC	3 cut(s)	269, 387, 519
BsaI	GGTCTC	4 cut(s)	108, 224, 448, 854
BsaJI	CCNNGG	5 cut(s)	492, 522, 762, 984, 1032
BsaWI	WCCGGW	2 cut(s)	106, 863
BsaXI	ACNNNNNCTCC	2 cut(s)	1223, 1253
Bsc4I	CCNNNNNNNGG	5 cut(s)	455, 696, 712, 1084, 1147
Bse118I	RCCGGY	4 cut(s)	149, 383, 863, 1193
Bse1I	ACTGG	3 cut(s)	88, 122, 1089
BseBI	CCWGG	1 cut(s)	772
BseCI	ATCGAT	1 cut(s)	1027
BseDI	CCNNGG	5 cut(s)	492, 522, 762, 984, 1032
BseGI	GGATG	2 cut(s)	583, 784
BseLI	CCNNNNNNNGG	5 cut(s)	455, 696, 712, 1084, 1147
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	3 cut(s)	88, 122, 1089
BseRI	GAGGAG	1 cut(s)	1433
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	4 cut(s)	26, 54, 818, 1289
BseYI	CCCAGC	1 cut(s)	1259
Bsh1236I	CGCG	2 cut(s)	570, 820
Bsh1285I	CGRYCG	2 cut(s)	868, 953
BshNI	GGYRCC	2 cut(s)	386, 518
BshTI	ACCGGT	1 cut(s)	863
BshVI	ATCGAT	1 cut(s)	1027
BsiEI	CGRYCG	2 cut(s)	868, 953
BsiHKAI	GWGCWC	2 cut(s)	15, 576
BsiHKCI	CYCGRG	4 cut(s)	411, 1078, 1187, 1218
BslFI	GGGAC	3 cut(s)	547, 862, 1260
BslI	CCNNNNNNNGG	5 cut(s)	455, 696, 712, 1084, 1147
BsmBI	CGTCTC	3 cut(s)	192, 878, 1116
BsmFI	GGGAC	3 cut(s)	547, 862, 1260
Bso31I	GGTCTC	4 cut(s)	108, 224, 448, 854
BsoBI	CYCGRG	4 cut(s)	411, 1078, 1187, 1218
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1286I	GDGCHC	5 cut(s)	15, 576, 654, 1219, 1288
Bsp143I	GATC	4 cut(s)	174, 403, 804, 1028
Bsp68I	TCGCGA	1 cut(s)	820
BspCNI	CTCAG	1 cut(s)	333
BspDI	ATCGAT	1 cut(s)	1027
BspFNI	CGCG	2 cut(s)	570, 820
BspLI	GGNNCC	8 cut(s)	388, 520, 562, 563, 704, 850, 1248, 1249
BspMAI	CTGCAG	1 cut(s)	44
BspPI	GGATC	2 cut(s)	812, 1023
BspT104I	TTCGAA	1 cut(s)	332
BspT107I	GGYRCC	2 cut(s)	386, 518
BspTNI	GGTCTC	4 cut(s)	108, 224, 448, 854
BsrFI	RCCGGY	4 cut(s)	149, 383, 863, 1193
BsrI	ACTGG	3 cut(s)	88, 122, 1089
BssAI	RCCGGY	4 cut(s)	149, 383, 863, 1193
BssECI	CCNNGG	5 cut(s)	492, 522, 762, 984, 1032
BssMI	GATC	4 cut(s)	174, 403, 804, 1028
BssNI	GRCGYC	3 cut(s)	269, 387, 519
BssSI	CACGAG	2 cut(s)	167, 253
BssT1I	CCWWGG	2 cut(s)	762, 984
Bst2BI	CACGAG	2 cut(s)	167, 253
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	8 cut(s)	458, 578, 853, 906, 954, 1127, 1406, 1461
Bst6I	CTCTTC	1 cut(s)	1098
BstACI	GRCGYC	3 cut(s)	269, 387, 519
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	9 cut(s)	147, 151, 477, 572, 759, 1001, 1116, 1141, 1195
BstDEI	CTNAG	2 cut(s)	341, 800
BstEII	GGTNACC	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	583, 784
BstFNI	CGCG	2 cut(s)	570, 820
BstH2I	RGCGCY	4 cut(s)	380, 390, 500, 522
BstHHI	GCGC	4 cut(s)	379, 389, 499, 521
BstKTI	GATC	4 cut(s)	177, 406, 807, 1031
BstMBI	GATC	4 cut(s)	174, 403, 804, 1028
BstMCI	CGRYCG	2 cut(s)	868, 953
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 374, 668, 831
BstNI	CCWGG	1 cut(s)	772
BstNSI	RCATGY	2 cut(s)	631, 1003
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	521, 770, 1032, 1212
BstSFI	CTRYAG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	654
BstUI	CGCG	2 cut(s)	570, 820
BstV1I	GCAGC	4 cut(s)	26, 54, 818, 1289
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	403
Bsu15I	ATCGAT	1 cut(s)	1027
BsuTUI	ATCGAT	1 cut(s)	1027
BtrI	CACGTC	3 cut(s)	289, 598, 891
BtsCI	GGATG	2 cut(s)	583, 784
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	3 cut(s)	45, 95, 807
BtuMI	TCGCGA	1 cut(s)	820
Cac8I	GCNNGC	9 cut(s)	147, 151, 477, 572, 759, 1001, 1116, 1141, 1195
CfoI	GCGC	4 cut(s)	379, 389, 499, 521
Cfr10I	RCCGGY	4 cut(s)	149, 383, 863, 1193
ClaI	ATCGAT	1 cut(s)	1027
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	94, 459
CspAI	ACCGGT	1 cut(s)	863
CspCI	CAANNNNNGTGG	2 cut(s)	877, 912
CviAII	CATG	6 cut(s)	466, 628, 692, 727, 1000, 1147
CviQI	GTAC	2 cut(s)	94, 459
DdeI	CTNAG	2 cut(s)	341, 800
DinI	GGCGCC	2 cut(s)	388, 520
DpnI	GATC	4 cut(s)	176, 405, 806, 1030
DpnII	GATC	4 cut(s)	174, 403, 804, 1028
DraIII	CACNNNGTG	1 cut(s)	712
DrdI	GACNNNNNNGTC	1 cut(s)	701
DriI	GACNNNNNGTC	3 cut(s)	121, 220, 867
DseDI	GACNNNNNNGTC	1 cut(s)	701
EaeI	YGGCCR	2 cut(s)	72, 660
Eam1104I	CTCTTC	1 cut(s)	1098
Eam1105I	GACNNNNNGTC	3 cut(s)	121, 220, 867
EarI	CTCTTC	1 cut(s)	1098
EciI	GGCGGA	1 cut(s)	386
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	762, 984
Eco147I	AGGCCT	3 cut(s)	761, 983, 1114
Eco24I	GRGCYC	3 cut(s)	15, 1219, 1288
Eco31I	GGTCTC	4 cut(s)	108, 224, 448, 854
Eco47I	GGWCC	5 cut(s)	561, 703, 849, 1247, 1461
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	2 cut(s)	485, 605
Eco88I	CYCGRG	4 cut(s)	411, 1078, 1187, 1218
Eco91I	GGTNACC	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	13
EcoO109I	RGGNCCY	2 cut(s)	561, 1247
EcoO65I	GGTNACC	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	770
EcoT14I	CCWWGG	2 cut(s)	762, 984
EcoT38I	GRGCYC	3 cut(s)	15, 1219, 1288
EgeI	GGCGCC	2 cut(s)	388, 520
EheI	GGCGCC	2 cut(s)	388, 520
ErhI	CCWWGG	2 cut(s)	762, 984
Esp3I	CGTCTC	3 cut(s)	192, 878, 1116
FaeI	CATG	6 cut(s)	469, 631, 695, 730, 1003, 1150
FaqI	GGGAC	3 cut(s)	547, 862, 1260
FatI	CATG	6 cut(s)	465, 627, 691, 726, 999, 1146
FauI	CCCGC	2 cut(s)	818, 1148
FblI	GTMKAC	3 cut(s)	114, 281, 1176
Fnu4HI	GCNGC	9 cut(s)	40, 43, 205, 366, 369, 480, 606, 832, 1303
FokI	GGATG	2 cut(s)	570, 791
FriOI	GRGCYC	3 cut(s)	15, 1219, 1288
Fsp4HI	GCNGC	9 cut(s)	40, 43, 205, 366, 369, 480, 606, 832, 1303
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	4 cut(s)	378, 388, 498, 520
GluI	GCNGC	9 cut(s)	40, 43, 205, 366, 369, 480, 606, 832, 1303
GsaI	CCCAGC	1 cut(s)	1263
GsuI	CTGGAG	2 cut(s)	320, 1080
HaeII	RGCGCY	4 cut(s)	380, 390, 500, 522
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	4 cut(s)	379, 389, 499, 521
Hin1I	GRCGYC	3 cut(s)	269, 387, 519
Hin1II	CATG	6 cut(s)	469, 631, 695, 730, 1003, 1150
Hin6I	GCGC	4 cut(s)	377, 387, 497, 519
HinP1I	GCGC	4 cut(s)	377, 387, 497, 519
HincII	GTYRAC	3 cut(s)	115, 282, 902
HindII	GTYRAC	3 cut(s)	115, 282, 902
HindIII	AAGCTT	2 cut(s)	1354, 1379
HinfI	GANTC	9 cut(s)	122, 179, 215, 329, 735, 932, 1037, 1151, 1181
HphI	GGTGA	3 cut(s)	427, 572, 1482
Hpy166II	GTNNAC	6 cut(s)	115, 282, 706, 715, 902, 1177
Hpy188I	TCNGA	6 cut(s)	135, 229, 554, 588, 937, 1504
Hpy188III	TCNNGA	5 cut(s)	167, 623, 819, 1059, 1220
Hpy8I	GTNNAC	6 cut(s)	115, 282, 706, 715, 902, 1177
Hpy99I	CGWCG	8 cut(s)	226, 271, 274, 277, 286, 592, 595, 873
HpyAV	CCTTC	5 cut(s)	299, 328, 509, 769, 1019
HpyCH4III	ACNGT	8 cut(s)	458, 578, 853, 906, 954, 1127, 1406, 1461
HpyCH4IV	ACGT	4 cut(s)	269, 288, 597, 890
HpyCH4V	TGCA	5 cut(s)	42, 352, 757, 999, 1207
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 374, 668, 831
HpyF3I	CTNAG	2 cut(s)	341, 800
HpySE526I	ACGT	4 cut(s)	269, 288, 597, 890
Hsp92I	GRCGYC	3 cut(s)	269, 387, 519
Hsp92II	CATG	6 cut(s)	469, 631, 695, 730, 1003, 1150
HspAI	GCGC	4 cut(s)	377, 387, 497, 519
KasI	GGCGCC	2 cut(s)	386, 518
KflI	GGGWCCC	2 cut(s)	561, 1247
KroI	GCCGGC	2 cut(s)	149, 1193
KroNI	GCCGGC	2 cut(s)	151, 1195
Kzo9I	GATC	4 cut(s)	174, 403, 804, 1028
LmnI	GCTCC	4 cut(s)	4, 136, 828, 1061
Lsp1109I	GCAGC	4 cut(s)	26, 54, 818, 1289
LweI	GCATC	4 cut(s)	285, 323, 361, 744
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	4 cut(s)	269, 288, 597, 890
MaeIII	GTNAC	4 cut(s)	257, 289, 578, 1087
MalI	GATC	4 cut(s)	176, 405, 806, 1030
MboI	GATC	4 cut(s)	174, 403, 804, 1028
MboII	GAAGA	2 cut(s)	1112, 1115
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	5 cut(s)	15, 576, 654, 1219, 1288
MluCI	AATT	1 cut(s)	1223
Mly113I	GGCGCC	2 cut(s)	387, 519
MlyI	GAGTC	5 cut(s)	131, 188, 209, 1145, 1175
MmeI	TCCRAC	3 cut(s)	611, 909, 1430
MreI	CGCCGGCG	1 cut(s)	149
MroNI	GCCGGC	2 cut(s)	149, 1193
MseI	TTAA	3 cut(s)	972, 1338, 1398
MspR9I	CCNGG	4 cut(s)	523, 772, 1034, 1214
MvaI	CCWGG	1 cut(s)	772
MvnI	CGCG	2 cut(s)	570, 820
MwoI	GCNNNNNNNGC	4 cut(s)	201, 374, 668, 831
NaeI	GCCGGC	2 cut(s)	151, 1195
NarI	GGCGCC	2 cut(s)	387, 519
NciI	CCSGG	3 cut(s)	523, 1034, 1214
NdeII	GATC	4 cut(s)	174, 403, 804, 1028
NgoMIV	GCCGGC	2 cut(s)	149, 1193
NlaIII	CATG	6 cut(s)	469, 631, 695, 730, 1003, 1150
NlaIV	GGNNCC	8 cut(s)	388, 520, 562, 563, 704, 850, 1248, 1249
NmeAIII	GCCGAG	2 cut(s)	221, 1148
NmuCI	GTSAC	2 cut(s)	289, 578
NruI	TCGCGA	1 cut(s)	820
NspI	RCATGY	2 cut(s)	631, 1003
NspV	TTCGAA	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	1003
PaeR7I	CTCGAG	2 cut(s)	1187, 1218
PceI	AGGCCT	3 cut(s)	761, 983, 1114
PciI	ACATGT	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	4 cut(s)	174, 278, 290, 1185
PdiI	GCCGGC	2 cut(s)	151, 1195
PfeI	GAWTC	4 cut(s)	329, 735, 932, 1037
PflFI	GACNNNGTC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	712
PfoI	TCCNGGA	1 cut(s)	770
PinAI	ACCGGT	1 cut(s)	863
PkrI	GCNGC	9 cut(s)	41, 44, 206, 367, 370, 481, 607, 833, 1304
PleI	GAGTC	5 cut(s)	130, 187, 209, 1145, 1175
PluTI	GGCGCC	2 cut(s)	390, 522
PpsI	GAGTC	5 cut(s)	130, 187, 209, 1145, 1175
PpuMI	RGGWCCY	2 cut(s)	561, 1247
PscI	ACATGT	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	15
Psp5II	RGGWCCY	2 cut(s)	561, 1247
Psp6I	CCWGG	1 cut(s)	770
PspEI	GGTNACC	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	1259
PspGI	CCWGG	1 cut(s)	770
PspN4I	GGNNCC	8 cut(s)	388, 520, 562, 563, 704, 850, 1248, 1249
PspPPI	RGGWCCY	2 cut(s)	561, 1247
PspXI	VCTCGAGB	1 cut(s)	1187
PstI	CTGCAG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	271
RruI	TCGCGA	1 cut(s)	820
RsaI	GTAC	2 cut(s)	95, 460
RsaNI	GTAC	2 cut(s)	94, 459
SacI	GAGCTC	1 cut(s)	15
SalI	GTCGAC	2 cut(s)	113, 280
SaqAI	TTAA	3 cut(s)	972, 1338, 1398
SatI	GCNGC	9 cut(s)	40, 43, 205, 366, 369, 480, 606, 832, 1303
Sau3AI	GATC	4 cut(s)	174, 403, 804, 1028
SchI	GAGTC	5 cut(s)	131, 188, 209, 1145, 1175
ScrFI	CCNGG	4 cut(s)	523, 772, 1034, 1214
SduI	GDGCHC	5 cut(s)	15, 576, 654, 1219, 1288
SfaNI	GCATC	4 cut(s)	285, 323, 361, 744
SfcI	CTRYAG	1 cut(s)	40
SfiI	GGCCNNNNNGGCC	1 cut(s)	668
SfoI	GGCGCC	2 cut(s)	388, 520
Sfr274I	CTCGAG	2 cut(s)	1187, 1218
SfuI	TTCGAA	1 cut(s)	332
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	5 cut(s)	561, 703, 849, 1247, 1461
SlaI	CTCGAG	2 cut(s)	1187, 1218
SmlI	CTYRAG	5 cut(s)	8, 431, 1187, 1218, 1287
SmoI	CTYRAG	5 cut(s)	8, 431, 1187, 1218, 1287
SphI	GCATGC	1 cut(s)	1003
Sse9I	AATT	1 cut(s)	1223
SseBI	AGGCCT	3 cut(s)	761, 983, 1114
SspDI	GGCGCC	2 cut(s)	386, 518
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	1 cut(s)	15
StuI	AGGCCT	3 cut(s)	761, 983, 1114
StyD4I	CCNGG	4 cut(s)	521, 770, 1032, 1212
StyI	CCWWGG	2 cut(s)	762, 984
TaaI	ACNGT	8 cut(s)	458, 578, 853, 906, 954, 1127, 1406, 1461
TaiI	ACGT	4 cut(s)	272, 291, 600, 893
TasI	AATT	1 cut(s)	1223
TauI	GCSGC	5 cut(s)	207, 368, 371, 482, 608
TfiI	GAWTC	4 cut(s)	329, 735, 932, 1037
Tru1I	TTAA	3 cut(s)	972, 1338, 1398
Tru9I	TTAA	3 cut(s)	972, 1338, 1398
TscAI	CASTG	3 cut(s)	52, 95, 814
TseFI	GTSAC	2 cut(s)	289, 578
TseI	GCWGC	4 cut(s)	39, 42, 831, 1302
Tsp45I	GTSAC	2 cut(s)	289, 578
TspDTI	ATGAA	2 cut(s)	905, 1135
TspGWI	ACGGA	2 cut(s)	299, 608
TspRI	CASTG	3 cut(s)	52, 95, 814
Tth111I	GACNNNGTC	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	712
VpaK11BI	GGWCC	5 cut(s)	561, 703, 849, 1247, 1461
XceI	RCATGY	2 cut(s)	631, 1003
XhoI	CTCGAG	2 cut(s)	1187, 1218
XmiI	GTMKAC	3 cut(s)	114, 281, 1176
XspI	CTAG	1 cut(s)	512
ZraI	GACGTC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.