AT4G08320

Homodimerisation domain of SGTA

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
5252640 .. 5255200
2561 bp
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UTR
Exon/CDS
Intron
AT4G08320.2

Sequence Viewer

Length: 1281 bp
ATGGCGAAACTAACAACAGACTCTCCTCTCTGCCGGAAAATCGTCCGTTCTTTCTTAAATTTTCTTGATTCCGTTGAGGTTGCTCCAGGTGTTGACGAAGAAGGTCTTGAGGTTGCTAGAGAATGTTTAAGAGAAGCTTTTAAACTTAATTCAGATTCTTCAAGAGATGATGATGATGATAGCTTTAAACCTATTTCACTTGTTAATTTGTTTACTTCATTGGACAACAATGAAACCATACCACCACCACCACCACCACCTGTTGCTGCTACTACTCAGGATCCTAGTTCCTCCGGTTCTCATGTCTCCGTGGATACGTGTAAAGAGCCTAGTTTTACTGGGACTTCTAGAGATGAACTGTTTGGTCAACTCTTTGGTGCGCTTGAGAAAGTACGGTATTTTAGGAATACACCTGATGGAGATGATGATCCTGCTCAGCTGGAGAAAGCTACAAGGATATTTCATGATTGTGTCAATGAAATGGAAAAGTCTGGATGTCAGACGTTTGATGTGAATAGCTTGGCGGAAACACTCAAGTGTCAAGGTAACAAAGCTATGCAGTCCAATCTTTATCTTGAGGCAGTCGAGCTTTATTCTTTTGCAATTGCACTGACGGATAAGAACGCTGTTTTCTACTGCAACAGGGCTGCTGCATATACACAGATCAACATGTGCTCAGAAGCAATCAAGGACTGTCTTAAATCCATTGAGATTGATCCAAATTATAGTAAGGCGTATAGTCGTCTTGGGTTAGCATATTATGCTCAAGGAAAATATGCCGAGGCTATCGAGAAAGGTTTCAAGAAAGCTTTGCTGTTGGATCCGCATAACGAATCTGTGAAAGAAAATATCAGGGTGGCTGAACAGAAAATTAGAGAAGAACAACAACGACAGAGACGTAGCCAGAACACGAGCACGTTTTACACTCAAGAGCCAGAAATGGGAGGAGGCCAGGGAATACCATCTCAGTTCTCAATGCCTGTAAACCCTGATTTGATGAGCATGTTCATGAACATGGCGGGAAACACATTCCCGGGAAATCATTCTCGCAATAACGAGGGAGGAGCAGGTGGAGATGGTACCAGAAATGGTGCAGATGAGCCTGAGATACATGTAGGCGGAAATATCAACATAGATCTCGGAGGCACAGAGCAAATGCCGGAAGATTTATCGGGTGCATTACGATCAATGATGCAGATGTTTGGAGGATCAATGGGAGGCACTGGTAACAATAATCCTCAAGATTCTAATGGTGCACAAGGAAGACCATCTGGGAATTAA

Protein Analysis

426

Amino Acids

46.54

Weight (kDa)

4.72

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGTA_dimer PF16546 14 - 72 1.9e-07 Homodimerisation domain of SGTA
TPR_11 PF13414 226 - 257 8.9e-06 TPR repeat
TPR_17 PF13431 232 - 264 5.7e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1058
Acc36I ACCTGC 1 cut(s) 1058
Acc65I GGTACC 1 cut(s) 1079
AccB1I GGYRCC 1 cut(s) 1079
AciI CCGC 4 cut(s) 524, 824, 1019, 1119
AclWI GGATC 7 cut(s) 275, 288, 422, 710, 815, 828, 1216
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 2 cut(s) 393, 1081
AfiI CCNNNNNNNGG 1 cut(s) 941
AflIII ACRYGT 3 cut(s) 317, 669, 1111
AgsI TTSAA 2 cut(s) 162, 802
AjnI CCWGG 2 cut(s) 85, 951
AleI CACNNNNGTG 1 cut(s) 535
AluBI AGCT 8 cut(s) 137, 183, 439, 449, 519, 554, 589, 809
AluI AGCT 8 cut(s) 137, 183, 439, 449, 519, 554, 589, 809
Alw21I GWGCWC 3 cut(s) 677, 917, 1258
Alw26I GTCTC 2 cut(s) 310, 889
Alw44I GTGCAC 1 cut(s) 1254
AlwI GGATC 7 cut(s) 275, 288, 422, 710, 815, 828, 1216
Ama87I CYCGRG 1 cut(s) 1033
AoxI GGCC 1 cut(s) 949
ApaLI GTGCAC 1 cut(s) 1254
ApeKI GCWGC 3 cut(s) 266, 647, 650
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 2 cut(s) 797, 1042
Asp718I GGTACC 1 cut(s) 1079
AspLEI GCGC 1 cut(s) 382
AsuC2I CCSGG 2 cut(s) 1034, 1035
AvaI CYCGRG 1 cut(s) 1033
BaeGI GKGCMC 1 cut(s) 1258
BamHI GGATCC 2 cut(s) 280, 820
BanI GGYRCC 1 cut(s) 1079
BauI CACGAG 1 cut(s) 910
BbsI GAAGAC 1 cut(s) 1270
Bbv12I GWGCWC 3 cut(s) 677, 917, 1258
BbvI GCAGC 3 cut(s) 253, 634, 637
BccI CCATC 4 cut(s) 410, 970, 1070, 1276
BciT130I CCWGG 2 cut(s) 87, 953
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 2 cut(s) 1034, 1035
BcoDI GTCTC 2 cut(s) 310, 889
BfaI CTAG 4 cut(s) 117, 285, 330, 348
BfuAI ACCTGC 1 cut(s) 1058
BfuI GTATCC 1 cut(s) 307
BglII AGATCT 1 cut(s) 1135
BisI GCNGC 3 cut(s) 267, 648, 651
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 3 cut(s) 268, 649, 652
Bme1390I CCNGG 4 cut(s) 87, 953, 1034, 1035
BmeT110I CYCGRG 1 cut(s) 1033
BmiI GGNNCC 3 cut(s) 282, 822, 1081
BmrFI CCNGG 4 cut(s) 87, 953, 1034, 1035
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 1182
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 1270
BpmI CTGGAG 2 cut(s) 69, 461
Bpu1102I GCTNAGC 1 cut(s) 435
BpuEI CTTGAG 7 cut(s) 128, 404, 518, 596, 750, 912, 1224
BpuMI CCSGG 2 cut(s) 1034, 1035
BsaAI YACGTR 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 426
BsaJI CCNNGG 4 cut(s) 309, 780, 952, 1033
BsaWI WCCGGW 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 1 cut(s) 941
Bse1I ACTGG 2 cut(s) 343, 1228
Bse8I GATNNNNATC 1 cut(s) 426
BseBI CCWGG 2 cut(s) 87, 953
BseDI CCNNGG 4 cut(s) 309, 780, 952, 1033
BseGI GGATG 1 cut(s) 500
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 941
BseMII CTCAG 5 cut(s) 290, 449, 690, 980, 1095
BseNI ACTGG 2 cut(s) 343, 1228
BseRI GAGGAG 3 cut(s) 15, 960, 1077
BseSI GKGCMC 1 cut(s) 1258
BseXI GCAGC 3 cut(s) 253, 634, 637
BsgI GTGCAG 1 cut(s) 1113
BshFI GGCC 1 cut(s) 951
BshNI GGYRCC 1 cut(s) 1079
BsiHKAI GWGCWC 3 cut(s) 677, 917, 1258
BsiHKCI CYCGRG 1 cut(s) 1033
BsiSI CCGG 4 cut(s) 34, 294, 1034, 1160
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 941
BsmAI GTCTC 2 cut(s) 310, 889
BsmBI CGTCTC 1 cut(s) 889
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 1 cut(s) 951
BsoBI CYCGRG 1 cut(s) 1033
Bsp1286I GDGCHC 3 cut(s) 677, 917, 1258
Bsp143I GATC 8 cut(s) 280, 427, 663, 715, 820, 1135, 1184, 1208
Bsp1720I GCTNAGC 1 cut(s) 435
BspACI CCGC 4 cut(s) 524, 824, 1019, 1119
BspANI GGCC 1 cut(s) 951
BspCNI CTCAG 5 cut(s) 289, 448, 689, 979, 1096
BspHI TCATGA 2 cut(s) 463, 1008
BspLI GGNNCC 3 cut(s) 282, 822, 1081
BspMI ACCTGC 1 cut(s) 1058
BspPI GGATC 7 cut(s) 275, 288, 422, 710, 815, 828, 1216
BspT107I GGYRCC 1 cut(s) 1079
BsrI ACTGG 2 cut(s) 343, 1228
BssECI CCNNGG 4 cut(s) 309, 780, 952, 1033
BssMI GATC 8 cut(s) 280, 427, 663, 715, 820, 1135, 1184, 1208
BssSI CACGAG 1 cut(s) 910
Bst2BI CACGAG 1 cut(s) 910
Bst2UI CCWGG 2 cut(s) 87, 953
Bst4CI ACNGT 3 cut(s) 360, 396, 695
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBAI YACGTR 1 cut(s) 318
BstDEI CTNAG 5 cut(s) 276, 435, 676, 966, 1104
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 500
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 8 cut(s) 283, 430, 666, 718, 823, 1138, 1187, 1211
BstMAI GTCTC 2 cut(s) 310, 889
BstMBI GATC 8 cut(s) 280, 427, 663, 715, 820, 1135, 1184, 1208
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstNI CCWGG 2 cut(s) 87, 953
BstNSI RCATGY 3 cut(s) 673, 1006, 1115
BstSCI CCNGG 4 cut(s) 85, 951, 1032, 1033
BstSLI GKGCMC 1 cut(s) 1258
BstV1I GCAGC 3 cut(s) 253, 634, 637
BstV2I GAAGAC 1 cut(s) 1270
BstX2I RGATCY 3 cut(s) 280, 820, 1135
BstYI RGATCY 3 cut(s) 280, 820, 1135
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 1 cut(s) 951
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 1 cut(s) 500
BtsIMutI CAGTG 2 cut(s) 608, 1221
BveI ACCTGC 1 cut(s) 1058
CciI TCATGA 2 cut(s) 463, 1008
CfoI GCGC 1 cut(s) 382
Cfr9I CCCGGG 1 cut(s) 1033
Csp6I GTAC 2 cut(s) 392, 1080
CviAII CATG 7 cut(s) 302, 464, 670, 1003, 1009, 1015, 1112
CviQI GTAC 2 cut(s) 392, 1080
DdeI CTNAG 5 cut(s) 276, 435, 676, 966, 1104
DpnI GATC 8 cut(s) 282, 429, 665, 717, 822, 1137, 1186, 1210
DpnII GATC 8 cut(s) 280, 427, 663, 715, 820, 1135, 1184, 1208
DraI TTTAAA 2 cut(s) 142, 187
EciI GGCGGA 2 cut(s) 539, 1134
Eco88I CYCGRG 1 cut(s) 1033
EcoRII CCWGG 2 cut(s) 85, 951
Esp3I CGTCTC 1 cut(s) 889
FaeI CATG 7 cut(s) 305, 467, 673, 1006, 1012, 1018, 1115
FalI AAGNNNNNCTT 4 cut(s) 90, 122, 121, 153
FaqI GGGAC 1 cut(s) 355
FatI CATG 7 cut(s) 301, 463, 669, 1002, 1008, 1014, 1111
FauI CCCGC 1 cut(s) 1012
Fnu4HI GCNGC 3 cut(s) 267, 648, 651
FokI GGATG 1 cut(s) 507
Fsp4HI GCNGC 3 cut(s) 267, 648, 651
FspBI CTAG 4 cut(s) 117, 285, 330, 348
GlaI GCGC 1 cut(s) 381
GluI GCNGC 3 cut(s) 267, 648, 651
GsuI CTGGAG 2 cut(s) 69, 461
HaeIII GGCC 1 cut(s) 951
HapII CCGG 4 cut(s) 34, 294, 1034, 1160
HhaI GCGC 1 cut(s) 382
Hin1II CATG 7 cut(s) 305, 467, 673, 1006, 1012, 1018, 1115
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 2 cut(s) 94, 368
HindII GTYRAC 2 cut(s) 94, 368
HindIII AAGCTT 2 cut(s) 135, 807
HinfI GANTC 5 cut(s) 20, 68, 155, 833, 1244
HpaII CCGG 4 cut(s) 34, 294, 1034, 1160
Hpy166II GTNNAC 5 cut(s) 94, 213, 368, 985, 1256
Hpy188I TCNGA 4 cut(s) 154, 501, 679, 1142
Hpy8I GTNNAC 5 cut(s) 94, 213, 368, 985, 1256
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 3 cut(s) 360, 396, 695
HpyCH4IV ACGT 4 cut(s) 317, 503, 898, 917
HpyCH4V TGCA 9 cut(s) 559, 602, 608, 639, 653, 1094, 1178, 1195, 1256
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 5 cut(s) 276, 435, 676, 966, 1104
HpySE526I ACGT 4 cut(s) 317, 503, 898, 917
Hsp92II CATG 7 cut(s) 305, 467, 673, 1006, 1012, 1018, 1115
HspAI GCGC 1 cut(s) 380
KpnI GGTACC 1 cut(s) 1083
Kzo9I GATC 8 cut(s) 280, 427, 663, 715, 820, 1135, 1184, 1208
LmnI GCTCC 2 cut(s) 88, 1064
Lsp1109I GCAGC 3 cut(s) 253, 634, 637
LweI GCATC 1 cut(s) 1182
MaeI CTAG 4 cut(s) 117, 285, 330, 348
MaeII ACGT 4 cut(s) 317, 503, 898, 917
MaeIII GTNAC 2 cut(s) 545, 1226
MalI GATC 8 cut(s) 282, 429, 665, 717, 822, 1137, 1186, 1210
MboI GATC 8 cut(s) 280, 427, 663, 715, 820, 1135, 1184, 1208
MboII GAAGA 5 cut(s) 110, 150, 890, 1175, 1275
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 3 cut(s) 280, 820, 1135
MhlI GDGCHC 3 cut(s) 677, 917, 1258
MluCI AATT 7 cut(s) 58, 148, 205, 603, 721, 870, 1276
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 798
MroXI GAANNNNTTC 2 cut(s) 797, 1042
MseI TTAA 8 cut(s) 56, 128, 141, 147, 186, 204, 699, 1279
MslI CAYNNNNRTG 4 cut(s) 468, 535, 1007, 1013
MspA1I CMGCKG 1 cut(s) 439
MspI CCGG 4 cut(s) 34, 294, 1034, 1160
MspR9I CCNGG 4 cut(s) 87, 953, 1034, 1035
MunI CAATTG 1 cut(s) 603
MvaI CCWGG 2 cut(s) 87, 953
MwoI GCNNNNNNNGC 1 cut(s) 761
NciI CCSGG 2 cut(s) 1034, 1035
NdeII GATC 8 cut(s) 280, 427, 663, 715, 820, 1135, 1184, 1208
NlaIII CATG 7 cut(s) 305, 467, 673, 1006, 1012, 1018, 1115
NlaIV GGNNCC 3 cut(s) 282, 822, 1081
NmeAIII GCCGAG 1 cut(s) 805
NspI RCATGY 3 cut(s) 673, 1006, 1115
OliI CACNNNNGTG 1 cut(s) 535
PagI TCATGA 2 cut(s) 463, 1008
PaqCI CACCTGC 1 cut(s) 1058
PciI ACATGT 2 cut(s) 669, 1111
PcsI WCGNNNNNNNCGW 1 cut(s) 895
PdmI GAANNNNTTC 2 cut(s) 797, 1042
PfeI GAWTC 4 cut(s) 68, 155, 833, 1244
PkrI GCNGC 3 cut(s) 268, 649, 652
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Ppu21I YACGTR 1 cut(s) 318
PscI ACATGT 2 cut(s) 669, 1111
Psp6I CCWGG 2 cut(s) 85, 951
PspGI CCWGG 2 cut(s) 85, 951
PspN4I GGNNCC 3 cut(s) 282, 822, 1081
PsuI RGATCY 3 cut(s) 280, 820, 1135
PvuII CAGCTG 1 cut(s) 439
RsaI GTAC 2 cut(s) 393, 1081
RsaNI GTAC 2 cut(s) 392, 1080
RseI CAYNNNNRTG 4 cut(s) 468, 535, 1007, 1013
SaqAI TTAA 8 cut(s) 56, 128, 141, 147, 186, 204, 699, 1279
SatI GCNGC 3 cut(s) 267, 648, 651
Sau3AI GATC 8 cut(s) 280, 427, 663, 715, 820, 1135, 1184, 1208
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 4 cut(s) 87, 953, 1034, 1035
SduI GDGCHC 3 cut(s) 677, 917, 1258
SfaNI GCATC 1 cut(s) 1182
SmaI CCCGGG 1 cut(s) 1035
SmiMI CAYNNNNRTG 4 cut(s) 468, 535, 1007, 1013
SmlI CTYRAG 7 cut(s) 107, 383, 533, 575, 765, 927, 1239
SmoI CTYRAG 7 cut(s) 107, 383, 533, 575, 765, 927, 1239
Sse9I AATT 7 cut(s) 58, 148, 205, 603, 721, 870, 1276
SsiI CCGC 4 cut(s) 524, 824, 1019, 1119
SspMI CTAG 4 cut(s) 117, 285, 330, 348
StyD4I CCNGG 4 cut(s) 85, 951, 1032, 1033
TaaI ACNGT 3 cut(s) 360, 396, 695
TaiI ACGT 4 cut(s) 320, 506, 901, 920
TaqI TCGA 2 cut(s) 585, 789
TasI AATT 7 cut(s) 58, 148, 205, 603, 721, 870, 1276
TfiI GAWTC 4 cut(s) 68, 155, 833, 1244
Tru1I TTAA 8 cut(s) 56, 128, 141, 147, 186, 204, 699, 1279
Tru9I TTAA 8 cut(s) 56, 128, 141, 147, 186, 204, 699, 1279
TscAI CASTG 2 cut(s) 615, 1228
TseI GCWGC 3 cut(s) 266, 647, 650
TspDTI ATGAA 7 cut(s) 207, 246, 369, 452, 492, 997, 1025
TspGWI ACGGA 4 cut(s) 35, 61, 298, 629
TspMI CCCGGG 1 cut(s) 1033
TspRI CASTG 2 cut(s) 615, 1228
VneI GTGCAC 1 cut(s) 1254
XapI RAATTY 1 cut(s) 58
XbaI TCTAGA 1 cut(s) 347
XceI RCATGY 3 cut(s) 673, 1006, 1115
XmaI CCCGGG 1 cut(s) 1033
XmnI GAANNNNTTC 2 cut(s) 797, 1042
XspI CTAG 4 cut(s) 117, 285, 330, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.