FvH4_2g26840

Small glutamine-rich tetratricopeptide repeat-containing

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
21478988 .. 21484054
5067 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26840.t1

Sequence Viewer

Length: 1347 bp
ATGGCTCCGCCGCTGACCACCGATTCTCCCCTCTCTCGCCGCATCGTCCGTTCCTTCTTGGATTTCCTCAGCTCCGTTGAACCGGGTGCTGGTGTTAATGGTGAGGGTATTCAGATTGCGAGGGAATGCCTGGAGGAGGCTTTCAAGCTCAACACTTCTCTTCCTGCTGATGATAATCATCGGATTAAACCCGGCTCGTTAGTTGAAATGTTCAGCTCACTGGAGAAGAACAAGGGGCAGGAGAATGTGACGTGTCATGGTCAGGGGTCAGTGGCAGTTCCTAGTGCATCAGCTGCTCAGGATGCCACTGGTGCCAATGTTTCAAAGGCATTGAAATCTCTGGGTCAGGATTCGACGGGTAAACAAAATGAATTAGGGGAGTCCAAAGATGCTCTGTTTGGGCGATTCTTTTCTGCACTTGAGACAGCTCGTTACTTTATGCCCTTGCCAGATGGCAGTGATGATCCAGTGAAATTAGAGAAAGCAACTCAAGTTTTCCATGATGCTTTAAATGAGATGGAAAGATCTGGATGTGAGGAATTCAGTCCTAAATTCTTGGCTGAGACCTTGAAATCCCAAGGTAATAAGGCCATGCAATCAAAGCTGTATACCAAGGCAATTGAGTTGTATGACTGTGCTATTGCGCTTTGTGAAAATAATGCTGTTTACCACTGTAACAGGGCAGCTGCTTACACTCAGATACACAAATATGCTGAAGCAATCAGAGATTGTCTTGTATCTATAGAGATCGACCCAAACTACAGCAAGGCATATAGTCGTCTGGGATTAGCTTTTTATGCAGTAGGTAGCTACCGTGAGGCTATTGATCAGGGATTTAAGATGGCCTTGCAATTGGATCCAAATAATGAAGCTGTCAAAGAAAATATTCGGATGGCTGAGCAGAAATTGATAGAGCAGCAACAACGATCAAGATCCCATCAGAACACAAGTTCATTTTCCTTCAGTAGTAGCAATGGTTCAGCTTCAGAACACCACAATCAATCTACAGGTGGGTCAAGAAGCCAGGGTGCACCTCCTCCGTTTGGTTCTATGCCATTCAATACAGGTTCTGGTACTGCTGATTTTGCAAATATGTTTATGAACATGGCTGGAAATGCATACCAAGGACAGCATTCTCAAGATAGCCAAGGTGATCACCATAGCAGCAATGGTAATGGAGATGATGAACCGGAAATAAGGGTTGATGGCAACGTGAATGTTGATTTTGGAGAAATGCCTGCAGAACTATCAGGAGCTCTAAGATCTGTGATGCAAATGTTGTCTGGGGTAGCATCCAATGGAAATGCGCATGATACCCCAAACGAAGGACCAACAAGACCAAACTAA

Protein Analysis

449

Amino Acids

48.4

Weight (kDa)

5.18

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1308
AccB1I GGYRCC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 608
AciI CCGC 3 cut(s) 8, 11, 40
AclWI GGATC 4 cut(s) 458, 851, 864, 927
AcsI RAATTY 2 cut(s) 539, 551
AcuI CTGAAG 3 cut(s) 735, 946, 969
AfaI GTAC 1 cut(s) 1075
AfiI CCNNNNNNNGG 4 cut(s) 89, 136, 1043, 1325
AflIII ACRYGT 1 cut(s) 251
AgsI TTSAA 7 cut(s) 80, 145, 206, 324, 334, 571, 1060
AjiI CACGTC 1 cut(s) 252
AjnI CCWGG 2 cut(s) 129, 1023
Alw21I GWGCWC 2 cut(s) 1033, 1258
Alw26I GTCTC 2 cut(s) 416, 557
Alw44I GTGCAC 1 cut(s) 1029
AlwI GGATC 4 cut(s) 458, 851, 864, 927
AlwNI CAGNNNCTG 1 cut(s) 1070
AoxI GGCC 2 cut(s) 588, 843
ApaLI GTGCAC 1 cut(s) 1029
ApeKI GCWGC 5 cut(s) 293, 683, 686, 916, 1164
ApoI RAATTY 2 cut(s) 539, 551
Asp700I GAANNNNTTC 1 cut(s) 885
AspLEI GCGC 2 cut(s) 646, 1309
AspS9I GGNCC 1 cut(s) 1328
AsuC2I CCSGG 2 cut(s) 84, 192
AsuHPI GGTGA 3 cut(s) 113, 1148, 1163
AvaII GGWCC 1 cut(s) 1328
BaeGI GKGCMC 1 cut(s) 1033
BamHI GGATCC 1 cut(s) 856
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 1258
Bbv12I GWGCWC 2 cut(s) 1033, 1258
BbvCI CCTCAGC 1 cut(s) 68
BbvI GCAGC 5 cut(s) 280, 673, 695, 928, 1176
BccI CCATC 6 cut(s) 446, 511, 835, 886, 945, 1199
BciT130I CCWGG 2 cut(s) 131, 1025
BclI TGATCA 2 cut(s) 826, 1153
BcnI CCSGG 2 cut(s) 84, 192
BcoDI GTCTC 2 cut(s) 416, 557
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 4 cut(s) 741, 760, 1005, 1239
BglII AGATCT 2 cut(s) 524, 1262
BisI GCNGC 7 cut(s) 11, 40, 294, 684, 687, 917, 1165
BlpI GCTNAGC 1 cut(s) 897
BlsI GCNGC 7 cut(s) 12, 41, 295, 685, 688, 918, 1166
Bme1390I CCNGG 4 cut(s) 84, 131, 192, 1025
Bme18I GGWCC 1 cut(s) 1328
BmgBI CACGTC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 1328
BmiI GGNNCC 3 cut(s) 6, 313, 858
BmrFI CCNGG 4 cut(s) 84, 131, 192, 1025
BmsI GCATC 7 cut(s) 51, 292, 296, 379, 493, 1260, 1301
BpmI CTGGAG 2 cut(s) 152, 242
Bpu10I CCTNAGC 2 cut(s) 68, 297
Bpu1102I GCTNAGC 1 cut(s) 897
BpuEI CTTGAG 3 cut(s) 440, 474, 1122
BpuMI CCSGG 2 cut(s) 84, 192
BsaBI GATNNNNATC 3 cut(s) 174, 177, 931
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 5 cut(s) 577, 612, 1024, 1123, 1147
BsaWI WCCGGW 1 cut(s) 1189
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 136, 1043, 1325
Bse1I ACTGG 3 cut(s) 225, 313, 467
Bse3DI GCAATG 2 cut(s) 979, 1174
Bse8I GATNNNNATC 3 cut(s) 174, 177, 931
BseBI CCWGG 2 cut(s) 131, 1025
BseDI CCNNGG 5 cut(s) 577, 612, 1024, 1123, 1147
BseGI GGATG 4 cut(s) 307, 536, 897, 1292
BseJI GATNNNNATC 3 cut(s) 174, 177, 931
BseLI CCNNNNNNNGG 4 cut(s) 89, 136, 1043, 1325
BseMI GCAATG 2 cut(s) 979, 1174
BseMII CTCAG 5 cut(s) 82, 311, 552, 710, 888
BseNI ACTGG 3 cut(s) 225, 313, 467
BseRI GAGGAG 2 cut(s) 149, 1026
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 5 cut(s) 280, 673, 695, 928, 1176
BsgI GTGCAG 1 cut(s) 399
BshFI GGCC 2 cut(s) 590, 845
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 2 cut(s) 1033, 1258
BsiSI CCGG 3 cut(s) 83, 192, 1190
BslI CCNNNNNNNGG 4 cut(s) 89, 136, 1043, 1325
BsmAI GTCTC 2 cut(s) 416, 557
BsmI GAATGC 2 cut(s) 131, 1132
BsnI GGCC 2 cut(s) 590, 845
Bso31I GGTCTC 1 cut(s) 557
Bsp1286I GDGCHC 2 cut(s) 1033, 1258
Bsp143I GATC 9 cut(s) 463, 524, 747, 826, 856, 926, 932, 1153, 1262
Bsp1720I GCTNAGC 1 cut(s) 897
BspACI CCGC 3 cut(s) 8, 11, 40
BspANI GGCC 2 cut(s) 590, 845
BspCNI CTCAG 5 cut(s) 81, 310, 553, 709, 889
BspLI GGNNCC 3 cut(s) 6, 313, 858
BspMAI CTGCAG 1 cut(s) 1243
BspPI GGATC 4 cut(s) 458, 851, 864, 927
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 557
BsrDI GCAATG 2 cut(s) 979, 1174
BsrI ACTGG 3 cut(s) 225, 313, 467
BssECI CCNNGG 5 cut(s) 577, 612, 1024, 1123, 1147
BssMI GATC 9 cut(s) 463, 524, 747, 826, 856, 926, 932, 1153, 1262
BssNAI GTATAC 1 cut(s) 609
BssT1I CCWWGG 4 cut(s) 577, 612, 1123, 1147
Bst1107I GTATAC 1 cut(s) 609
Bst2UI CCWGG 2 cut(s) 131, 1025
Bst4CI ACNGT 3 cut(s) 635, 674, 815
Bst6I CTCTTC 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 1239
BstDEI CTNAG 6 cut(s) 68, 297, 561, 696, 897, 1259
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 4 cut(s) 307, 536, 897, 1292
BstHHI GCGC 2 cut(s) 646, 1309
BstKTI GATC 9 cut(s) 466, 527, 750, 829, 859, 929, 935, 1156, 1265
BstMAI GTCTC 2 cut(s) 416, 557
BstMBI GATC 9 cut(s) 463, 524, 747, 826, 856, 926, 932, 1153, 1262
BstMWI GCNNNNNNNGC 7 cut(s) 293, 302, 311, 601, 797, 1085, 1115
BstNI CCWGG 2 cut(s) 131, 1025
BstSCI CCNGG 4 cut(s) 82, 129, 190, 1023
BstSFI CTRYAG 4 cut(s) 741, 760, 1005, 1239
BstSLI GKGCMC 1 cut(s) 1033
BstV1I GCAGC 5 cut(s) 280, 673, 695, 928, 1176
BstX2I RGATCY 4 cut(s) 524, 856, 932, 1262
BstYI RGATCY 4 cut(s) 524, 856, 932, 1262
BstZ17I GTATAC 1 cut(s) 609
BsuRI GGCC 2 cut(s) 590, 845
BtrI CACGTC 1 cut(s) 252
BtsCI GGATG 4 cut(s) 307, 536, 897, 1292
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 6 cut(s) 218, 276, 306, 463, 474, 670
Cac8I GCNNGC 1 cut(s) 1239
CaiI CAGNNNCTG 1 cut(s) 1070
CfoI GCGC 2 cut(s) 646, 1309
Cfr13I GGNCC 1 cut(s) 1328
Csp6I GTAC 1 cut(s) 1074
CviAII CATG 5 cut(s) 257, 500, 592, 1105, 1310
CviQI GTAC 1 cut(s) 1074
DdeI CTNAG 6 cut(s) 68, 297, 561, 696, 897, 1259
DpnI GATC 9 cut(s) 465, 526, 749, 828, 858, 928, 934, 1155, 1264
DpnII GATC 9 cut(s) 463, 524, 747, 826, 856, 926, 932, 1153, 1262
DraI TTTAAA 1 cut(s) 510
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 1256
Eco130I CCWWGG 4 cut(s) 577, 612, 1123, 1147
Eco24I GRGCYC 1 cut(s) 1258
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 1328
Eco53kI GAGCTC 1 cut(s) 1256
Eco57I CTGAAG 3 cut(s) 735, 946, 969
EcoICRI GAGCTC 1 cut(s) 1256
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 2 cut(s) 129, 1023
EcoT14I CCWWGG 4 cut(s) 577, 612, 1123, 1147
EcoT22I ATGCAT 1 cut(s) 1120
EcoT38I GRGCYC 1 cut(s) 1258
ErhI CCWWGG 4 cut(s) 577, 612, 1123, 1147
FaeI CATG 5 cut(s) 260, 503, 595, 1108, 1313
FalI AAGNNNNNCTT 2 cut(s) 830, 862
FatI CATG 5 cut(s) 256, 499, 591, 1104, 1309
FbaI TGATCA 2 cut(s) 826, 1153
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 7 cut(s) 11, 40, 294, 684, 687, 917, 1165
FokI GGATG 4 cut(s) 314, 543, 904, 1279
FriOI GRGCYC 1 cut(s) 1258
Fsp4HI GCNGC 7 cut(s) 11, 40, 294, 684, 687, 917, 1165
FspAI RTGCGCAY 1 cut(s) 1308
FspBI CTAG 1 cut(s) 282
FspI TGCGCA 1 cut(s) 1308
GlaI GCGC 2 cut(s) 645, 1308
GluI GCNGC 7 cut(s) 11, 40, 294, 684, 687, 917, 1165
GsuI CTGGAG 2 cut(s) 152, 242
HaeIII GGCC 2 cut(s) 590, 845
HapII CCGG 3 cut(s) 83, 192, 1190
HhaI GCGC 2 cut(s) 646, 1309
Hin1II CATG 5 cut(s) 260, 503, 595, 1108, 1313
Hin6I GCGC 2 cut(s) 644, 1307
HinP1I GCGC 2 cut(s) 644, 1307
HinfI GANTC 4 cut(s) 23, 350, 380, 405
HpaII CCGG 3 cut(s) 83, 192, 1190
HphI GGTGA 3 cut(s) 113, 1148, 1163
Hpy166II GTNNAC 4 cut(s) 362, 609, 667, 1031
Hpy188I TCNGA 7 cut(s) 114, 183, 699, 725, 891, 942, 988
Hpy188III TCNNGA 7 cut(s) 299, 347, 528, 930, 1017, 1139, 1251
Hpy8I GTNNAC 4 cut(s) 362, 609, 667, 1031
Hpy99I CGWCG 1 cut(s) 358
HpyAV CCTTC 3 cut(s) 64, 970, 1319
HpyCH4III ACNGT 3 cut(s) 635, 674, 815
HpyCH4IV ACGT 2 cut(s) 251, 1212
HpyF10VI GCNNNNNNNGC 7 cut(s) 293, 302, 311, 601, 797, 1085, 1115
HpyF3I CTNAG 6 cut(s) 68, 297, 561, 696, 897, 1259
HpySE526I ACGT 2 cut(s) 251, 1212
Hsp92II CATG 5 cut(s) 260, 503, 595, 1108, 1313
HspAI GCGC 2 cut(s) 644, 1307
Ksp22I TGATCA 2 cut(s) 826, 1153
Kzo9I GATC 9 cut(s) 463, 524, 747, 826, 856, 926, 932, 1153, 1262
LmnI GCTCC 3 cut(s) 10, 77, 1253
Lsp1109I GCAGC 5 cut(s) 280, 673, 695, 928, 1176
LweI GCATC 7 cut(s) 51, 292, 296, 379, 493, 1260, 1301
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 251, 1212
MaeIII GTNAC 3 cut(s) 247, 431, 674
MalI GATC 9 cut(s) 465, 526, 749, 828, 858, 928, 934, 1155, 1264
MboI GATC 9 cut(s) 463, 524, 747, 826, 856, 926, 932, 1153, 1262
MboII GAAGA 2 cut(s) 152, 238
MfeI CAATTG 2 cut(s) 618, 851
MflI RGATCY 4 cut(s) 524, 856, 932, 1262
MhlI GDGCHC 2 cut(s) 1033, 1258
MluCI AATT 7 cut(s) 371, 473, 539, 551, 618, 851, 905
MlyI GAGTC 1 cut(s) 389
Mph1103I ATGCAT 1 cut(s) 1120
MroXI GAANNNNTTC 1 cut(s) 885
MseI TTAA 4 cut(s) 96, 186, 509, 837
MslI CAYNNNNRTG 1 cut(s) 708
MspA1I CMGCKG 3 cut(s) 13, 293, 686
MspI CCGG 3 cut(s) 83, 192, 1190
MspR9I CCNGG 4 cut(s) 84, 131, 192, 1025
MunI CAATTG 2 cut(s) 618, 851
Mva1269I GAATGC 2 cut(s) 131, 1132
MvaI CCWGG 2 cut(s) 131, 1025
MwoI GCNNNNNNNGC 7 cut(s) 293, 302, 311, 601, 797, 1085, 1115
NciI CCSGG 2 cut(s) 84, 192
NdeII GATC 9 cut(s) 463, 524, 747, 826, 856, 926, 932, 1153, 1262
NlaIII CATG 5 cut(s) 260, 503, 595, 1108, 1313
NlaIV GGNNCC 3 cut(s) 6, 313, 858
NmuCI GTSAC 1 cut(s) 247
NsbI TGCGCA 1 cut(s) 1308
NsiI ATGCAT 1 cut(s) 1120
PctI GAATGC 2 cut(s) 131, 1132
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 3 cut(s) 23, 350, 405
PkrI GCNGC 7 cut(s) 12, 41, 295, 685, 688, 918, 1166
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp124BI GAGCTC 1 cut(s) 1258
Psp6I CCWGG 2 cut(s) 129, 1023
PspGI CCWGG 2 cut(s) 129, 1023
PspN4I GGNNCC 3 cut(s) 6, 313, 858
PspPI GGNCC 1 cut(s) 1328
PsrI GAACNNNNNNTAC 2 cut(s) 961, 993
PstI CTGCAG 1 cut(s) 1243
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 4 cut(s) 524, 856, 932, 1262
PvuII CAGCTG 2 cut(s) 293, 686
RsaI GTAC 1 cut(s) 1075
RsaNI GTAC 1 cut(s) 1074
RseI CAYNNNNRTG 1 cut(s) 708
SacI GAGCTC 1 cut(s) 1258
SaqAI TTAA 4 cut(s) 96, 186, 509, 837
SatI GCNGC 7 cut(s) 11, 40, 294, 684, 687, 917, 1165
Sau3AI GATC 9 cut(s) 463, 524, 747, 826, 856, 926, 932, 1153, 1262
Sau96I GGNCC 1 cut(s) 1328
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 4 cut(s) 84, 131, 192, 1025
SduI GDGCHC 2 cut(s) 1033, 1258
SfaNI GCATC 7 cut(s) 51, 292, 296, 379, 493, 1260, 1301
SfcI CTRYAG 4 cut(s) 741, 760, 1005, 1239
SinI GGWCC 1 cut(s) 1328
SmiMI CAYNNNNRTG 1 cut(s) 708
SmlI CTYRAG 3 cut(s) 419, 489, 1137
SmoI CTYRAG 3 cut(s) 419, 489, 1137
Sse9I AATT 7 cut(s) 371, 473, 539, 551, 618, 851, 905
SsiI CCGC 3 cut(s) 8, 11, 40
SspI AATATT 1 cut(s) 886
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 1258
StyD4I CCNGG 4 cut(s) 82, 129, 190, 1023
StyI CCWWGG 4 cut(s) 577, 612, 1123, 1147
TaaI ACNGT 3 cut(s) 635, 674, 815
TaiI ACGT 2 cut(s) 254, 1215
TaqI TCGA 2 cut(s) 353, 750
TasI AATT 7 cut(s) 371, 473, 539, 551, 618, 851, 905
TauI GCSGC 2 cut(s) 13, 42
TfiI GAWTC 3 cut(s) 23, 350, 405
Tru1I TTAA 4 cut(s) 96, 186, 509, 837
Tru9I TTAA 4 cut(s) 96, 186, 509, 837
TscAI CASTG 6 cut(s) 225, 276, 313, 463, 474, 677
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 5 cut(s) 293, 683, 686, 916, 1164
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 5 cut(s) 384, 882, 942, 1115, 1200
TspGWI ACGGA 3 cut(s) 38, 64, 1029
TspRI CASTG 6 cut(s) 225, 276, 313, 463, 474, 677
VneI GTGCAC 1 cut(s) 1029
VpaK11BI GGWCC 1 cut(s) 1328
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 2 cut(s) 539, 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 1166
XmiI GTMKAC 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 885
XspI CTAG 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.