Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010162

Physical Location & Seq

Genomic Coordinates Forward (+)

56530108 .. 56538250

Gene Structure 8143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG366800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCTCCGCCGCTCAACACCGATTCTCCCATCTCTCGCCGCATCGTCCGCTCGTTCCTGGATTTCCTCAGCTCCGTTGAACCGGGTCCTGGTGTTAATGTTGAGGGTATTGAGATTGCAAGGGAATGTCTGGAGGAGGCTTTCAAGCTCAATACCTCTCCCGCTGATGATCCGATAAAACCCGAGTCGTTAGTTGAAATGTTTAGCTCACTAGGAAGCAACAAGCTTCCGGAGAATGTATCCTGTCATGGTCAGGGATCAGTTCCAGCTCCTAGTTCATCAGCTGGTCAGGATACCGCGGCAGCCAATCTTTCAGAGGCATCAAAATCTCTGGGTCAGGATTCGACGGGTAAAAACCATGAACTAGGGGAGTCAAAAGATGCTCTGTTTGGGCAATTCTTTTCTGCACTTGAGAGAACTAGTTACTTTATGCCCTTGCCTGATGGTAGTGATGATCCAGTGAGATTAGAGAAAGCAACTCAATTTTTCCATGATGCTTTAAATGAGATGGAAAGATCTGGATGTGAGGAATTCAGTCCTAAATACTTGGCTGAGACGTTGAAATCACAAGGTAATAGGGCCATGCAATCGAAGCTGTATACCAAGGCAATTGAGTTGTATGACTGTGCTATTGCACTTTGTGAAAATAATGCTGTTTACCGCTGTAACAGGGCGGCTGCTTACACTCAGATACACAAATATGCTGAAGCAGTCAGAGATTGCCTTAAATCTATAGAGATCGACCCAAACTATAGCAAGGCATACAGTCGTCTGGGATTAGCTTATTATGCAGTAGGGAACTACCGTGAGGCTATTGATAAGGGATTTAAGAAAGCCTTGCAACTGGATCCAAATAATGAAGCTATCAAAGAAAATATTCGGGTTGGTTCTTGTGTACTTTCTTCTTTTCTGTATTTTTTGCAACTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010605 GO:0016043 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0033036 GO:0033365 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042176 GO:0042177 GO:0042221 GO:0043161 GO:0043170 GO:0043621 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045048 GO:0045184 GO:0045861 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051205 GO:0051234 GO:0051246 GO:0051248 GO:0051603 GO:0051641 GO:0051716 GO:0060255 GO:0061024 GO:0061136 GO:0065007 GO:0070727 GO:0071704 GO:0071816 GO:0071840 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090150 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901799 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1904292 GO:1904293 GO:1905897 GO:2000058 GO:2000059

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SGTA_dimer TPR_1 TPR_11 TPR_17 TPR_2

Protein Analysis

310

Amino Acids

34.07

Weight (kDa)

5.07

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	221 - 251	8.7e-07	Tetratricopeptide repeat
TPR_11	PF13414	227 - 266	1e-05	TPR repeat
TPR_17	PF13431	241 - 272	4.9e-06	Tetratricopeptide repeat
TPR_1	PF00515	253 - 286	8.4e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08320 AT4G08320
fragaria_vesca	FvH4_2g26830 FvH4_2g26840
malus_domestica	MD15G1349900.v1.1
prunus_persica	Prupe.1G499100_v2.0.a1 Prupe.1G499100_v2.0.a1 Prupe.1G499100_v2.0.a1
pyrus_communis	pycom15g31300
rosa_chinensis	RchiOBHm_Chr6g0295691
rosa_laevigata	RLG00000011775
rosa_multiflora	Rmu_sc0007372.1_g000005 Rmu_sc0012497.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172210
rosa_rugosa	Rorug06G0253300 Rorug06G0253400
rosa_samantha	Rh6AG366800 Rh6BG374700 Rh6CG381000 Rh6DG367800
rosa_wichuraiana	Rw6G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	13, 51
AccI	GTMKAC	1 cut(s)	599
AccII	CGCG	1 cut(s)	299
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	9 cut(s)	8, 11, 40, 49, 162, 297, 299, 661, 674
AclWI	GGATC	5 cut(s)	164, 265, 449, 842, 855
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	1 cut(s)	726
AdeI	CACNNNGTG	1 cut(s)	641
AfaI	GTAC	1 cut(s)	897
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	80, 145, 197, 562
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	57, 88
AluBI	AGCT	9 cut(s)	72, 148, 207, 226, 269, 284, 595, 782, 863
AluI	AGCT	9 cut(s)	72, 148, 207, 226, 269, 284, 595, 782, 863
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	5 cut(s)	164, 265, 449, 842, 855
Ama87I	CYCGRG	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	1 cut(s)	579
ApeKI	GCWGC	2 cut(s)	302, 677
ApoI	RAATTY	1 cut(s)	530
Asp700I	GAANNNNTTC	1 cut(s)	876
AspS9I	GGNCC	2 cut(s)	86, 579
AsuC2I	CCSGG	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	847
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	314, 664
BccI	CCATC	3 cut(s)	38, 437, 502
BciT130I	CCWGG	2 cut(s)	59, 90
BciVI	GTATCC	2 cut(s)	250, 286
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	548
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	4 cut(s)	212, 273, 365, 420
BfmI	CTRYAG	2 cut(s)	732, 751
BfuI	GTATCC	2 cut(s)	250, 286
BglII	AGATCT	1 cut(s)	515
BisI	GCNGC	6 cut(s)	11, 40, 300, 303, 675, 678
BlsI	GCNGC	6 cut(s)	12, 41, 301, 304, 676, 679
Bme1390I	CCNGG	3 cut(s)	59, 84, 90
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	86, 579
BmiI	GGNNCC	3 cut(s)	6, 87, 849
BmrFI	CCNGG	3 cut(s)	59, 84, 90
BmsI	GCATC	4 cut(s)	51, 329, 370, 484
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	297, 603
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	458, 849
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	59, 90
BseDI	CCNNGG	2 cut(s)	297, 603
BseGI	GGATG	1 cut(s)	527
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	3 cut(s)	82, 543, 701
BseNI	ACTGG	2 cut(s)	458, 849
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	314, 664
BsgI	GTGCAG	1 cut(s)	390
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	581
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	83, 230
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	548
BsmBI	CGTCTC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	182
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	6 cut(s)	169, 257, 454, 515, 738, 847
BspACI	CCGC	9 cut(s)	8, 11, 40, 49, 162, 297, 299, 661, 674
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	3 cut(s)	81, 544, 700
BspEI	TCCGGA	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	3 cut(s)	6, 87, 849
BspPI	GGATC	5 cut(s)	164, 265, 449, 842, 855
BsrBI	CCGCTC	2 cut(s)	13, 51
BsrI	ACTGG	2 cut(s)	458, 849
BssECI	CCNNGG	2 cut(s)	297, 603
BssMI	GATC	6 cut(s)	169, 257, 454, 515, 738, 847
BssNAI	GTATAC	1 cut(s)	600
BssT1I	CCWWGG	1 cut(s)	603
Bst1107I	GTATAC	1 cut(s)	600
Bst2UI	CCWGG	2 cut(s)	59, 90
Bst4CI	ACNGT	3 cut(s)	626, 767, 806
BstDEI	CTNAG	3 cut(s)	68, 552, 687
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	527
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	6 cut(s)	172, 260, 457, 518, 741, 850
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	6 cut(s)	169, 257, 454, 515, 738, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 592, 788
BstNI	CCWGG	2 cut(s)	59, 90
BstSCI	CCNGG	3 cut(s)	57, 82, 88
BstSFI	CTRYAG	2 cut(s)	732, 751
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	314, 664
BstX2I	RGATCY	2 cut(s)	515, 847
BstYI	RGATCY	2 cut(s)	515, 847
BstZ17I	GTATAC	1 cut(s)	600
BsuI	GTATCC	2 cut(s)	250, 286
BsuRI	GGCC	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	465
Cfr13I	GGNCC	2 cut(s)	86, 579
Cfr42I	CCGCGG	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	896
CviAII	CATG	4 cut(s)	248, 359, 491, 583
CviQI	GTAC	1 cut(s)	896
DdeI	CTNAG	3 cut(s)	68, 552, 687
DpnI	GATC	6 cut(s)	171, 259, 456, 517, 740, 849
DpnII	GATC	6 cut(s)	169, 257, 454, 515, 738, 847
DraI	TTTAAA	1 cut(s)	501
DraIII	CACNNNGTG	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	603
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	57, 88
EcoT14I	CCWWGG	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	603
Esp3I	CGTCTC	1 cut(s)	548
FaeI	CATG	4 cut(s)	251, 362, 494, 586
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FatI	CATG	4 cut(s)	247, 358, 490, 582
FauI	CCCGC	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	599
Fnu4HI	GCNGC	6 cut(s)	11, 40, 300, 303, 675, 678
FokI	GGATG	1 cut(s)	534
Fsp4HI	GCNGC	6 cut(s)	11, 40, 300, 303, 675, 678
FspBI	CTAG	4 cut(s)	212, 273, 365, 420
GluI	GCNGC	6 cut(s)	11, 40, 300, 303, 675, 678
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	2 cut(s)	83, 230
Hin1II	CATG	4 cut(s)	251, 362, 494, 586
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	4 cut(s)	23, 185, 341, 371
HpaII	CCGG	2 cut(s)	83, 230
Hpy166II	GTNNAC	3 cut(s)	600, 658, 896
Hpy188I	TCNGA	4 cut(s)	174, 316, 690, 716
Hpy188III	TCNNGA	5 cut(s)	131, 230, 290, 338, 519
Hpy8I	GTNNAC	3 cut(s)	600, 658, 896
Hpy99I	CGWCG	1 cut(s)	349
HpyCH4III	ACNGT	3 cut(s)	626, 767, 806
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	7 cut(s)	119, 407, 586, 635, 791, 841, 922
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 592, 788
HpyF3I	CTNAG	3 cut(s)	68, 552, 687
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	4 cut(s)	251, 362, 494, 586
Kpn2I	TCCGGA	1 cut(s)	229
KspI	CCGCGG	1 cut(s)	300
Kzo9I	GATC	6 cut(s)	169, 257, 454, 515, 738, 847
LmnI	GCTCC	3 cut(s)	10, 77, 274
Lsp1109I	GCAGC	2 cut(s)	314, 664
LweI	GCATC	4 cut(s)	51, 329, 370, 484
MaeI	CTAG	4 cut(s)	212, 273, 365, 420
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	2 cut(s)	422, 665
MalI	GATC	6 cut(s)	171, 259, 456, 517, 740, 849
MbiI	CCGCTC	2 cut(s)	13, 51
MboI	GATC	6 cut(s)	169, 257, 454, 515, 738, 847
MboII	GAAGA	1 cut(s)	894
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	2 cut(s)	515, 847
MluCI	AATT	4 cut(s)	395, 482, 530, 609
MlyI	GAGTC	2 cut(s)	194, 380
MnlI	CCTC	8 cut(s)	77, 97, 127, 130, 166, 310, 520, 802
MroI	TCCGGA	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	876
MseI	TTAA	4 cut(s)	96, 500, 726, 828
MslI	CAYNNNNRTG	1 cut(s)	699
MspA1I	CMGCKG	4 cut(s)	164, 284, 299, 663
MspI	CCGG	2 cut(s)	83, 230
MspR9I	CCNGG	3 cut(s)	59, 84, 90
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	2 cut(s)	59, 90
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	48, 592, 788
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	6 cut(s)	169, 257, 454, 515, 738, 847
NlaIII	CATG	4 cut(s)	251, 362, 494, 586
NlaIV	GGNNCC	3 cut(s)	6, 87, 849
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	2 cut(s)	23, 341
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	6 cut(s)	12, 41, 301, 304, 676, 679
PleI	GAGTC	2 cut(s)	193, 379
PpsI	GAGTC	2 cut(s)	193, 379
PpuMI	RGGWCCY	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	57, 88
PspGI	CCWGG	2 cut(s)	57, 88
PspN4I	GGNNCC	3 cut(s)	6, 87, 849
PspPI	GGNCC	2 cut(s)	86, 579
PspPPI	RGGWCCY	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	515, 847
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	897
RsaNI	GTAC	1 cut(s)	896
RseI	CAYNNNNRTG	1 cut(s)	699
SacII	CCGCGG	1 cut(s)	300
SaqAI	TTAA	4 cut(s)	96, 500, 726, 828
SatI	GCNGC	6 cut(s)	11, 40, 300, 303, 675, 678
Sau3AI	GATC	6 cut(s)	169, 257, 454, 515, 738, 847
Sau96I	GGNCC	2 cut(s)	86, 579
SchI	GAGTC	2 cut(s)	194, 380
ScrFI	CCNGG	3 cut(s)	59, 84, 90
SfaNI	GCATC	4 cut(s)	51, 329, 370, 484
SfcI	CTRYAG	2 cut(s)	732, 751
Sfr303I	CCGCGG	1 cut(s)	300
SgrBI	CCGCGG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	4 cut(s)	395, 482, 530, 609
SsiI	CCGC	9 cut(s)	8, 11, 40, 49, 162, 297, 299, 661, 674
SspI	AATATT	1 cut(s)	877
SspMI	CTAG	4 cut(s)	212, 273, 365, 420
StyD4I	CCNGG	3 cut(s)	57, 82, 88
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	3 cut(s)	626, 767, 806
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	3 cut(s)	344, 590, 741
TasI	AATT	4 cut(s)	395, 482, 530, 609
TatI	WGTACW	1 cut(s)	895
TauI	GCSGC	4 cut(s)	13, 42, 302, 677
TfiI	GAWTC	2 cut(s)	23, 341
Tru1I	TTAA	4 cut(s)	96, 500, 726, 828
Tru9I	TTAA	4 cut(s)	96, 500, 726, 828
TscAI	CASTG	1 cut(s)	465
TseI	GCWGC	2 cut(s)	302, 677
TspDTI	ATGAA	3 cut(s)	267, 375, 873
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	4 cut(s)	212, 273, 365, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.