Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012497.1

Orthogroup ID

OG0010162

Physical Location & Seq

Genomic Coordinates Forward (+)

2494 .. 7323

Gene Structure 4830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012497.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

atggctccgccgctcaacaccgattctcccatctctcgccgcatcgtccgctcgttcctggatttcctcagctccgttgaaccgggccctggtgttaatgttgagggtattgagattgcaagggaatgtctggaggaggctttcaagctcaatacctcccccgctgatgatccgataaaacccgagtcattatttgaaatgtttagctcacgaggaagcagcaagcttccggagaatgtatcctgtcatggtcagggatcagttccagctcctagttcatcagctggtcaggataccgcggcagccaatctttcagaggcatcaaaatctctgggtcaggattcgacgggtaaaaaccatgaactaggtattattcttcttttttttgctgctcctcccccatttatggcagctgcttacactcagatacacaaatatgctgaagcagtcagagattgccttaaatctatagagatcgacccaaactatagcaaggcatacagtcgtctgggattagcttattatgcagtagggaactaccgtgaggctattgataagggattcaagaaagccttgcaactggatccaaataatgaagctatcaaagaaaatattcgggtggctgagctgaaattgatagagcagcaacaacgatcaggatctcatcagaacacaagttcattttcgtttagtagtagcaacggttcggcttcagaacaccacaaccaatctacaggtgggtcaggccagggtgcaccacctctgtttggttctctgccattcaatgcaggttctggtcctgctgattttgcaaatatgtttatgaacatggctgcaaatgcataccaaggacagcattctcaagatagccaaggtgatgaccatagcagcaatgttaatggtgttgatgaaccggaaataatggttgacggcaacataaatgttaattttggagaaatgcctgcggagctatcaggagctttgagatctgtggctgagctgaaattgatagagcagcaacaacgatcaggatctcatcagaacacaagttcattttcgtttagtagtagcaacggttcggcttcagaacaccacaaccaatctacaggtgggtcaggccagggtgcaccacctctgtttggttctctgccattcaatgcaggttctggtcctgctgattttgcaaatatgtttatgaacatggctgcaaatgcataccaaggacagcattctcaagatagccaaggtgatgaccatagcagcaatgttaatggtgttgatgaaccggaaataatggttgacggcaacataaatgttaattttggagaaatgcctgcggagctatcaggagctttgagatctgtgatgcagatgttttctggggcaacatcacagggaaattcgcaggatactccaaatgaaggaccaagaccaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010605 GO:0016043 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0033036 GO:0033365 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042176 GO:0042177 GO:0042221 GO:0043161 GO:0043170 GO:0043621 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045048 GO:0045184 GO:0045861 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051205 GO:0051234 GO:0051246 GO:0051248 GO:0051603 GO:0051641 GO:0051716 GO:0060255 GO:0061024 GO:0061136 GO:0065007 GO:0070727 GO:0071704 GO:0071816 GO:0071840 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090150 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901799 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1904292 GO:1904293 GO:1905897 GO:2000058 GO:2000059

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SGTA_dimer TPR_1 TPR_11 TPR_17 TPR_2

Protein Analysis

479

Amino Acids

50.71

Weight (kDa)

4.77

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08320 AT4G08320
fragaria_vesca	FvH4_2g26830 FvH4_2g26840
malus_domestica	MD15G1349900.v1.1
prunus_persica	Prupe.1G499100_v2.0.a1 Prupe.1G499100_v2.0.a1 Prupe.1G499100_v2.0.a1
pyrus_communis	pycom15g31300
rosa_chinensis	RchiOBHm_Chr6g0295691
rosa_laevigata	RLG00000011775
rosa_multiflora	Rmu_sc0007372.1_g000005 Rmu_sc0012497.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172210
rosa_rugosa	Rorug06G0253300 Rorug06G0253400
rosa_samantha	Rh6AG366800 Rh6BG374700 Rh6CG381000 Rh6DG367800
rosa_wichuraiana	Rw6G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	779, 1151
AccBSI	CCGCTC	2 cut(s)	13, 51
AccII	CGCG	1 cut(s)	299
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	9 cut(s)	8, 11, 40, 49, 162, 297, 299, 965, 1337
AclWI	GGATC	6 cut(s)	164, 265, 578, 591, 667, 1039
AcsI	RAATTY	1 cut(s)	1399
AcuI	CTGAAG	3 cut(s)	462, 696, 1068
AfiI	CCNNNNNNNGG	5 cut(s)	89, 406, 767, 1139, 1421
AgsI	TTSAA	6 cut(s)	80, 145, 197, 565, 784, 1156
AjnI	CCWGG	4 cut(s)	57, 88, 747, 1119
Alw21I	GWGCWC	2 cut(s)	757, 1129
Alw44I	GTGCAC	2 cut(s)	753, 1125
AlwI	GGATC	6 cut(s)	164, 265, 578, 591, 667, 1039
AlwNI	CAGNNNCTG	2 cut(s)	794, 1166
Ama87I	CYCGRG	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	3 cut(s)	85, 745, 1117
ApaI	GGGCCC	1 cut(s)	89
ApaLI	GTGCAC	2 cut(s)	753, 1125
ApoI	RAATTY	1 cut(s)	1399
Asp700I	GAANNNNTTC	1 cut(s)	612
AspS9I	GGNCC	5 cut(s)	85, 86, 797, 1169, 1424
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	887, 1259
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	3 cut(s)	797, 1169, 1424
BaeGI	GKGCMC	3 cut(s)	89, 757, 1129
BamHI	GGATCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	757, 1129
BbvCI	CCTCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	2 cut(s)	946, 1318
BciT130I	CCWGG	4 cut(s)	59, 90, 749, 1121
BciVI	GTATCC	3 cut(s)	250, 286, 1402
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	2 cut(s)	273, 365
BfmI	CTRYAG	4 cut(s)	468, 487, 732, 1104
BfuAI	ACCTGC	2 cut(s)	779, 1151
BfuI	GTATCC	3 cut(s)	250, 286, 1402
BglII	AGATCT	2 cut(s)	986, 1358
BlpI	GCTNAGC	2 cut(s)	624, 996
Bme1390I	CCNGG	5 cut(s)	59, 84, 90, 749, 1121
Bme18I	GGWCC	3 cut(s)	797, 1169, 1424
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	5 cut(s)	85, 86, 797, 1169, 1424
BmiI	GGNNCC	3 cut(s)	6, 87, 585
BmrFI	CCNGG	5 cut(s)	59, 84, 90, 749, 1121
BmsI	GCATC	3 cut(s)	51, 329, 1356
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	68
Bpu1102I	GCTNAGC	2 cut(s)	624, 996
BpuEI	CTTGAG	2 cut(s)	846, 1218
BpuMI	CCSGG	1 cut(s)	84
BsaBI	GATNNNNATC	2 cut(s)	658, 1030
BsaJI	CCNNGG	8 cut(s)	88, 297, 748, 847, 871, 1120, 1219, 1243
BsaWI	WCCGGW	3 cut(s)	229, 913, 1285
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	5 cut(s)	89, 406, 767, 1139, 1421
Bse1I	ACTGG	1 cut(s)	585
Bse3DI	GCAATG	2 cut(s)	898, 1270
Bse8I	GATNNNNATC	2 cut(s)	658, 1030
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	4 cut(s)	59, 90, 749, 1121
BseDI	CCNNGG	8 cut(s)	88, 297, 748, 847, 871, 1120, 1219, 1243
BseJI	GATNNNNATC	2 cut(s)	658, 1030
BseLI	CCNNNNNNNGG	5 cut(s)	89, 406, 767, 1139, 1421
BseMI	GCAATG	2 cut(s)	898, 1270
BseMII	CTCAG	4 cut(s)	82, 437, 615, 987
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	2 cut(s)	149, 384
BseSI	GKGCMC	3 cut(s)	89, 757, 1129
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	3 cut(s)	87, 747, 1119
BsiHKAI	GWGCWC	2 cut(s)	757, 1129
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	4 cut(s)	83, 230, 914, 1286
BslI	CCNNNNNNNGG	5 cut(s)	89, 406, 767, 1139, 1421
BsmI	GAATGC	2 cut(s)	856, 1228
BsnI	GGCC	3 cut(s)	87, 747, 1119
BsoBI	CYCGRG	1 cut(s)	182
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	89, 757, 1129
Bsp13I	TCCGGA	1 cut(s)	229
Bsp1720I	GCTNAGC	2 cut(s)	624, 996
BspACI	CCGC	9 cut(s)	8, 11, 40, 49, 162, 297, 299, 965, 1337
BspANI	GGCC	3 cut(s)	87, 747, 1119
BspCNI	CTCAG	4 cut(s)	81, 436, 616, 988
BspEI	TCCGGA	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	3 cut(s)	6, 87, 585
BspMI	ACCTGC	2 cut(s)	779, 1151
BspPI	GGATC	6 cut(s)	164, 265, 578, 591, 667, 1039
BsrBI	CCGCTC	2 cut(s)	13, 51
BsrDI	GCAATG	2 cut(s)	898, 1270
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	8 cut(s)	88, 297, 748, 847, 871, 1120, 1219, 1243
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	4 cut(s)	847, 871, 1219, 1243
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	4 cut(s)	59, 90, 749, 1121
Bst4CI	ACNGT	4 cut(s)	503, 542, 704, 1076
BstC8I	GCNNGC	3 cut(s)	224, 963, 1335
BstDEI	CTNAG	4 cut(s)	68, 423, 624, 996
BstDSI	CCRYGG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	299
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 524, 809, 839, 967, 1181, 1211, 1339
BstNI	CCWGG	4 cut(s)	59, 90, 749, 1121
BstSCI	CCNGG	5 cut(s)	57, 82, 88, 747, 1119
BstSFI	CTRYAG	4 cut(s)	468, 487, 732, 1104
BstSLI	GKGCMC	3 cut(s)	89, 757, 1129
BstUI	CGCG	1 cut(s)	299
BstX2I	RGATCY	5 cut(s)	583, 659, 986, 1031, 1358
BstYI	RGATCY	5 cut(s)	583, 659, 986, 1031, 1358
BsuI	GTATCC	3 cut(s)	250, 286, 1402
BsuRI	GGCC	3 cut(s)	87, 747, 1119
BtgI	CCRYGG	1 cut(s)	297
BveI	ACCTGC	2 cut(s)	779, 1151
Cac8I	GCNNGC	3 cut(s)	224, 963, 1335
CaiI	CAGNNNCTG	2 cut(s)	794, 1166
Cfr13I	GGNCC	5 cut(s)	85, 86, 797, 1169, 1424
Cfr42I	CCGCGG	1 cut(s)	300
CviAII	CATG	4 cut(s)	248, 359, 829, 1201
DdeI	CTNAG	4 cut(s)	68, 423, 624, 996
Eco130I	CCWWGG	4 cut(s)	847, 871, 1219, 1243
Eco24I	GRGCYC	1 cut(s)	89
Eco47I	GGWCC	3 cut(s)	797, 1169, 1424
Eco57I	CTGAAG	3 cut(s)	462, 696, 1068
Eco88I	CYCGRG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	4 cut(s)	57, 88, 747, 1119
EcoT14I	CCWWGG	4 cut(s)	847, 871, 1219, 1243
EcoT22I	ATGCAT	2 cut(s)	844, 1216
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	4 cut(s)	847, 871, 1219, 1243
FaeI	CATG	4 cut(s)	251, 362, 832, 1204
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FatI	CATG	4 cut(s)	247, 358, 828, 1200
FauI	CCCGC	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	89
FspBI	CTAG	2 cut(s)	273, 365
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	87, 747, 1119
HapII	CCGG	4 cut(s)	83, 230, 914, 1286
Hin1II	CATG	4 cut(s)	251, 362, 832, 1204
HincII	GTYRAC	2 cut(s)	928, 1300
HindII	GTYRAC	2 cut(s)	928, 1300
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	4 cut(s)	23, 185, 341, 561
HpaII	CCGG	4 cut(s)	83, 230, 914, 1286
HphI	GGTGA	2 cut(s)	887, 1259
Hpy166II	GTNNAC	4 cut(s)	755, 928, 1127, 1300
Hpy188I	TCNGA	8 cut(s)	174, 316, 426, 452, 669, 715, 1041, 1087
Hpy8I	GTNNAC	4 cut(s)	755, 928, 1127, 1300
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	1415
HpyCH4III	ACNGT	4 cut(s)	503, 542, 704, 1076
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 524, 809, 839, 967, 1181, 1211, 1339
HpyF3I	CTNAG	4 cut(s)	68, 423, 624, 996
Hsp92II	CATG	4 cut(s)	251, 362, 832, 1204
Kpn2I	TCCGGA	1 cut(s)	229
KspI	CCGCGG	1 cut(s)	300
LmnI	GCTCC	8 cut(s)	10, 77, 274, 397, 967, 977, 1339, 1349
LweI	GCATC	3 cut(s)	51, 329, 1356
MaeI	CTAG	2 cut(s)	273, 365
MbiI	CCGCTC	2 cut(s)	13, 51
MboII	GAAGA	1 cut(s)	368
MflI	RGATCY	5 cut(s)	583, 659, 986, 1031, 1358
MhlI	GDGCHC	3 cut(s)	89, 757, 1129
MluCI	AATT	5 cut(s)	632, 946, 1004, 1318, 1399
MlyI	GAGTC	1 cut(s)	194
Mph1103I	ATGCAT	2 cut(s)	844, 1216
MroI	TCCGGA	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	6 cut(s)	96, 462, 897, 945, 1269, 1317
MslI	CAYNNNNRTG	1 cut(s)	435
MspA1I	CMGCKG	4 cut(s)	164, 284, 299, 413
MspI	CCGG	4 cut(s)	83, 230, 914, 1286
MspR9I	CCNGG	5 cut(s)	59, 84, 90, 749, 1121
Mva1269I	GAATGC	2 cut(s)	856, 1228
MvaI	CCWGG	4 cut(s)	59, 90, 749, 1121
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	8 cut(s)	48, 524, 809, 839, 967, 1181, 1211, 1339
NciI	CCSGG	1 cut(s)	84
NlaIII	CATG	4 cut(s)	251, 362, 832, 1204
NlaIV	GGNNCC	3 cut(s)	6, 87, 585
NsiI	ATGCAT	2 cut(s)	844, 1216
PctI	GAATGC	2 cut(s)	856, 1228
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	3 cut(s)	23, 341, 561
PfoI	TCCNGGA	1 cut(s)	57
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp6I	CCWGG	4 cut(s)	57, 88, 747, 1119
PspGI	CCWGG	4 cut(s)	57, 88, 747, 1119
PspN4I	GGNNCC	3 cut(s)	6, 87, 585
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	5 cut(s)	85, 86, 797, 1169, 1424
PsrI	GAACNNNNNNTAC	4 cut(s)	688, 720, 1060, 1092
PstNI	CAGNNNCTG	2 cut(s)	794, 1166
PsuI	RGATCY	5 cut(s)	583, 659, 986, 1031, 1358
PvuII	CAGCTG	2 cut(s)	284, 413
RseI	CAYNNNNRTG	1 cut(s)	435
SacII	CCGCGG	1 cut(s)	300
SaqAI	TTAA	6 cut(s)	96, 462, 897, 945, 1269, 1317
Sau96I	GGNCC	5 cut(s)	85, 86, 797, 1169, 1424
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	5 cut(s)	59, 84, 90, 749, 1121
SduI	GDGCHC	3 cut(s)	89, 757, 1129
SfaNI	GCATC	3 cut(s)	51, 329, 1356
SfcI	CTRYAG	4 cut(s)	468, 487, 732, 1104
Sfr303I	CCGCGG	1 cut(s)	300
SgrBI	CCGCGG	1 cut(s)	300
SinI	GGWCC	3 cut(s)	797, 1169, 1424
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	2 cut(s)	861, 1233
SmoI	CTYRAG	2 cut(s)	861, 1233
Sse9I	AATT	5 cut(s)	632, 946, 1004, 1318, 1399
SsiI	CCGC	9 cut(s)	8, 11, 40, 49, 162, 297, 299, 965, 1337
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	2 cut(s)	273, 365
StyD4I	CCNGG	5 cut(s)	57, 82, 88, 747, 1119
StyI	CCWWGG	4 cut(s)	847, 871, 1219, 1243
TaaI	ACNGT	4 cut(s)	503, 542, 704, 1076
TaqI	TCGA	2 cut(s)	344, 477
TasI	AATT	5 cut(s)	632, 946, 1004, 1318, 1399
TauI	GCSGC	3 cut(s)	13, 42, 302
TfiI	GAWTC	3 cut(s)	23, 341, 561
Tru1I	TTAA	6 cut(s)	96, 462, 897, 945, 1269, 1317
Tru9I	TTAA	6 cut(s)	96, 462, 897, 945, 1269, 1317
TspGWI	ACGGA	1 cut(s)	64
VneI	GTGCAC	2 cut(s)	753, 1125
VpaK11BI	GGWCC	3 cut(s)	797, 1169, 1424
XapI	RAATTY	1 cut(s)	1399
XcmI	CCANNNNNNNNNTGG	2 cut(s)	734, 1106
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	2 cut(s)	273, 365
Zsp2I	ATGCAT	2 cut(s)	844, 1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.