Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010162

Physical Location & Seq

Genomic Coordinates Forward (+)

21475966 .. 21478243

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCAGCTAAACTTATCCATGATGCTTTCAATGATGGAAACATCTGGAGGTGAGAAATTCAGTCCTAAATACTTGGCTCAGTTGGCTGAGACCTTGAAATTAAAAGGTAATAAGGCCATGGAATCAAAGCAGTATACCAAGGCAATTGCGTTGTATGACTGTGCTATTGCATTTTGTGAAAATAATGCTGTTTACCACTGTAACAGGGCAGCTGCTTACATTGAGATACACAAACACAACGAAGCAATGCGAGATTGCCTTAAATCTATTGAGATAGACCCAAACTATAGCAAGGGATATACTCGTCTGGGAGTAGCTTATTATGCACTAGGTAACTACCGTGCGGCTATTGATAAGGGATTTAAGAAAGCCTTGCAGTTGGATCCAAAAAATGAAGCTGCCAAAGAAAGTATTCGGGTGTCTCAGCTGAAATTGATAGAGCAGCAACAACAATCAGGATCTCATTATTCTCATCATCAGAACACAAGTTCATTTTCCTTGAGTAGTAGCAGCGTGCAGGGTTCAGGGTCAAAAATCCATGGTGCATTCAATACAGGTTCTGTTCCTGTTGATTTTGCAAATATGTTTACGAACATGGGTGCGACTGCATACCAAGGACAGCATCCTGAATATAACATCCGTAACACCATTGTTAATGGAGGAATTCATCTACCAAAGACAGCATCCCCTATATGTGTCGTCATCCGTAACAGCACTGTTAATGGAATTGATCTACCAAGGACAGCTTCCTCGATATCTGTCGTCATCAAGAACAGCATTGTTAATGGAGTTGATCAACAGTTCTACACGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010605 GO:0016043 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0033036 GO:0033365 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042176 GO:0042177 GO:0042221 GO:0043161 GO:0043170 GO:0043621 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045048 GO:0045184 GO:0045861 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051205 GO:0051234 GO:0051246 GO:0051248 GO:0051603 GO:0051641 GO:0051716 GO:0060255 GO:0061024 GO:0061136 GO:0065007 GO:0070727 GO:0071704 GO:0071816 GO:0071840 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090150 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901799 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1904292 GO:1904293 GO:1905897 GO:2000058 GO:2000059

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SGTA_dimer TPR_1 TPR_11 TPR_17 TPR_2

Protein Analysis

272

Amino Acids

29.81

Weight (kDa)

9.14

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_11	PF13414	36 - 73	5.4e-06	TPR repeat
TPR_1	PF00515	64 - 96	3e-06	Tetratricopeptide repeat
TPR_17	PF13431	86 - 117	6.1e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08320 AT4G08320
fragaria_vesca	FvH4_2g26830 FvH4_2g26840
malus_domestica	MD15G1349900.v1.1
prunus_persica	Prupe.1G499100_v2.0.a1 Prupe.1G499100_v2.0.a1 Prupe.1G499100_v2.0.a1
pyrus_communis	pycom15g31300
rosa_chinensis	RchiOBHm_Chr6g0295691
rosa_laevigata	RLG00000011775
rosa_multiflora	Rmu_sc0007372.1_g000005 Rmu_sc0012497.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172210
rosa_rugosa	Rorug06G0253300 Rorug06G0253400
rosa_samantha	Rh6AG366800 Rh6BG374700 Rh6CG381000 Rh6DG367800
rosa_wichuraiana	Rw6G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	3 cut(s)	377, 390, 466
AcsI	RAATTY	2 cut(s)	56, 663
AgsI	TTSAA	3 cut(s)	30, 97, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	730, 762
AluBI	AGCT	6 cut(s)	7, 212, 317, 398, 427, 746
AluI	AGCT	6 cut(s)	7, 212, 317, 398, 427, 746
Alw26I	GTCTC	2 cut(s)	83, 426
AlwI	GGATC	3 cut(s)	377, 390, 466
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	6 cut(s)	4, 209, 212, 398, 442, 510
ApoI	RAATTY	2 cut(s)	56, 663
Asp700I	GAANNNNTTC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	62
BamHI	GGATCC	1 cut(s)	382
BbvI	GCAGC	6 cut(s)	16, 199, 221, 385, 454, 522
BccI	CCATC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	793
BcoDI	GTCTC	2 cut(s)	83, 426
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	286
BisI	GCNGC	7 cut(s)	5, 210, 213, 345, 399, 443, 511
BlsI	GCNGC	7 cut(s)	6, 211, 214, 346, 400, 444, 512
BmiI	GGNNCC	1 cut(s)	384
BmsI	GCATC	3 cut(s)	12, 631, 692
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	520
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	5 cut(s)	117, 138, 538, 613, 737
Bse3DI	GCAATG	1 cut(s)	252
BseDI	CCNNGG	5 cut(s)	117, 138, 538, 613, 737
BseGI	GGATG	4 cut(s)	622, 636, 683, 702
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	78, 92, 437
BseXI	GCAGC	6 cut(s)	16, 199, 221, 385, 454, 522
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	83, 426
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	83
Bsp143I	GATC	4 cut(s)	382, 458, 730, 793
Bsp19I	CCATGG	2 cut(s)	117, 538
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	3 cut(s)	79, 91, 436
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	3 cut(s)	377, 390, 466
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	252
BssECI	CCNNGG	5 cut(s)	117, 138, 538, 613, 737
BssMI	GATC	4 cut(s)	382, 458, 730, 793
BssNAI	GTATAC	1 cut(s)	135
BssT1I	CCWWGG	5 cut(s)	117, 138, 538, 613, 737
Bst1107I	GTATAC	1 cut(s)	135
Bst4CI	ACNGT	5 cut(s)	161, 200, 341, 718, 801
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	3 cut(s)	78, 87, 423
BstDSI	CCRYGG	2 cut(s)	117, 538
BstF5I	GGATG	4 cut(s)	622, 636, 683, 702
BstKTI	GATC	4 cut(s)	385, 461, 733, 796
BstMAI	GTCTC	2 cut(s)	83, 426
BstMBI	GATC	4 cut(s)	382, 458, 730, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 323
BstSFI	CTRYAG	1 cut(s)	286
BstV1I	GCAGC	6 cut(s)	16, 199, 221, 385, 454, 522
BstX2I	RGATCY	2 cut(s)	382, 458
BstYI	RGATCY	2 cut(s)	382, 458
BstZ17I	GTATAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	2 cut(s)	117, 538
BtsCI	GGATG	4 cut(s)	622, 636, 683, 702
BtsIMutI	CAGTG	2 cut(s)	196, 714
Cac8I	GCNNGC	1 cut(s)	515
CaiI	CAGNNNCTG	1 cut(s)	560
CviAII	CATG	4 cut(s)	19, 118, 539, 595
DdeI	CTNAG	3 cut(s)	78, 87, 423
DpnI	GATC	4 cut(s)	384, 460, 732, 795
DpnII	GATC	4 cut(s)	382, 458, 730, 793
Eco130I	CCWWGG	5 cut(s)	117, 138, 538, 613, 737
Eco31I	GGTCTC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	756
EcoRI	GAATTC	1 cut(s)	663
EcoRV	GATATC	1 cut(s)	756
EcoT14I	CCWWGG	5 cut(s)	117, 138, 538, 613, 737
ErhI	CCWWGG	5 cut(s)	117, 138, 538, 613, 737
FaeI	CATG	4 cut(s)	22, 121, 542, 598
FalI	AAGNNNNNCTT	4 cut(s)	356, 388, 730, 762
FatI	CATG	4 cut(s)	18, 117, 538, 594
FbaI	TGATCA	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	7 cut(s)	5, 210, 213, 345, 399, 443, 511
FokI	GGATG	4 cut(s)	609, 623, 670, 689
Fsp4HI	GCNGC	7 cut(s)	5, 210, 213, 345, 399, 443, 511
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	7 cut(s)	5, 210, 213, 345, 399, 443, 511
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	22, 121, 542, 598
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	3 cut(s)	135, 193, 588
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	4 cut(s)	45, 456, 626, 769
Hpy8I	GTNNAC	3 cut(s)	135, 193, 588
HpyCH4III	ACNGT	5 cut(s)	161, 200, 341, 718, 801
HpyCH4V	TGCA	8 cut(s)	4, 170, 326, 376, 517, 545, 578, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 323
HpyF3I	CTNAG	3 cut(s)	78, 87, 423
Hsp92II	CATG	4 cut(s)	22, 121, 542, 598
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	4 cut(s)	382, 458, 730, 793
LpnPI	CCDG	9 cut(s)	30, 190, 293, 441, 503, 510, 540, 579, 639
Lsp1109I	GCAGC	6 cut(s)	16, 199, 221, 385, 454, 522
LweI	GCATC	3 cut(s)	12, 631, 692
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	4 cut(s)	200, 332, 641, 707
MalI	GATC	4 cut(s)	384, 460, 732, 795
MboI	GATC	4 cut(s)	382, 458, 730, 793
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	2 cut(s)	382, 458
MluCI	AATT	6 cut(s)	56, 98, 144, 431, 663, 726
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	3 cut(s)	41, 653, 760
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	6 cut(s)	101, 261, 363, 654, 720, 783
MspA1I	CMGCKG	2 cut(s)	212, 427
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	545
MwoI	GCNNNNNNNGC	2 cut(s)	83, 323
NcoI	CCATGG	2 cut(s)	117, 538
NdeII	GATC	4 cut(s)	382, 458, 730, 793
NlaIII	CATG	4 cut(s)	22, 121, 542, 598
NlaIV	GGNNCC	1 cut(s)	384
PctI	GAATGC	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	7 cut(s)	6, 211, 214, 346, 400, 444, 512
PspN4I	GGNNCC	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	382, 458
PvuII	CAGCTG	2 cut(s)	212, 427
SaqAI	TTAA	6 cut(s)	101, 261, 363, 654, 720, 783
SatI	GCNGC	7 cut(s)	5, 210, 213, 345, 399, 443, 511
Sau3AI	GATC	4 cut(s)	382, 458, 730, 793
SfaNI	GCATC	3 cut(s)	12, 631, 692
SfcI	CTRYAG	1 cut(s)	286
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	6 cut(s)	56, 98, 144, 431, 663, 726
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	329
StyI	CCWWGG	5 cut(s)	117, 138, 538, 613, 737
TaaI	ACNGT	5 cut(s)	161, 200, 341, 718, 801
TaqI	TCGA	1 cut(s)	752
TasI	AATT	6 cut(s)	56, 98, 144, 431, 663, 726
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	6 cut(s)	101, 261, 363, 654, 720, 783
Tru9I	TTAA	6 cut(s)	101, 261, 363, 654, 720, 783
TscAI	CASTG	2 cut(s)	203, 721
TseI	GCWGC	6 cut(s)	4, 209, 212, 398, 442, 510
TspDTI	ATGAA	3 cut(s)	408, 480, 656
TspGWI	ACGGA	2 cut(s)	629, 695
TspRI	CASTG	2 cut(s)	203, 721
XapI	RAATTY	2 cut(s)	56, 663
XmiI	GTMKAC	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.