Prupe.1G499100_v2.0.a1

Small glutamine-rich tetratricopeptide repeat-containing

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
41323061 .. 41329808
6748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G499100.1

Sequence Viewer

Length: 1326 bp
ATGGCTCCATTGAAGACCGATTCTCCCATCTCTCGTCGCATCGTACGTTCCTTCTTGGATTTCCTCAACTCAGTTGAACCAGCTTCTGGTGTCGATCTTGAAAGCCTTGAGGTTGCAAAGGAATGCTTGCAGGAGACTTTTAAGCTTAATATACCTGCTACTGATGATTGGATTAAACCCGTTTCGTTGGTTGATATTTTTAGTTCACTGGAGTTGAACAAGCTTCAGGAGAATAATTCTGATCTTGGTCATGGATCGAGCTCAGTTGATGCTCCTAGTTCATCAGCCGCTCAGGCTTCTGCTGATGCCAATCGTTCAAAGGCATCAAAATCTCTGGGTGAAGATTTGACAAGTAAAGACCATGCATTAGGGGAGTCCAAAGATGCACTATTTGGGCAATTCTTTTCTGCCCTTGAGAGAAATCTCTATTTTAAGACCTTGCCTGATGGTAATGATGACCCAGTCAGATTAGACAAAGCGACTAATTTATTCCATGATGCTTTAGCTGAGATGGAAAGATCTGGATGCGAGGAATTCAGTCCTAAAATTCTGGCAGAGACCTTGAAATCACAAGGTAATAAGGCCATGCAATCAACGCTGTACCCCAAGGCAATTGAGTTGTATGACTGTGCTGTTGCACTTTGTGAAAGTAATGCTGTTTACTACTGTAACAGGGCAGCGGCTTACACTCAGATGCACAAATATACTGAAGCAATCAGAGATTGCCTTAAATCCATTGAAATTGACCCCAATTATAGCAAGGCATACAGTCGTCTGGGATTAGCTTATTATGCACAAGGGAACTACAGTGATGCTATTGAGAAAGGATTCAAGAAAGCATTGCAATTGGATCCGGGCAATGAAGCTGTGAAAGAAAATATACGGGTGGCTGTTCAGAAATTGAGAGAGGAACAACAACGAGCAGAATCTGGTCAGAACACAAGTTCGTTTAGTAGTAGCAGTGCTTCAGAACACCCCAACCAGTCTACAGGAGGGTCGAGAAGCCATGCTGCACCTCCTCCGTTTGGTTCTATGCCATTTAATACAGGTGCTCTTCCTGCTGAATTTGCTAATATGTTTATGAACATGGCTGCAAATGCGTACCAAGGACAACATTCTCCAGATAACCAAGGAGATGATAGCAGTACCGAGGGATTTGATGAACCGGGAATAAGGATTGGGGGTAACATCAATTTCAATTTCGGTGAACAAATGCCCGAGGAACTAAGCGGAGCTTTGAGATCAGTGATGGAAATGTTTTCCGGAACAACAGCATCTCAGGGAAATTCACAAGATACTACAAATGAAAGACCAAGGCCAAACTAA

Protein Analysis

442

Amino Acids

48.03

Weight (kDa)

4.85

Isoelectric Point (pI)

54.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
AccB7I CCANNNNNTGG 1 cut(s) 86
AccBSI CCGCTC 1 cut(s) 290
AccI GTMKAC 1 cut(s) 986
AccIII TCCGGA 1 cut(s) 1262
AciI CCGC 3 cut(s) 288, 680, 1230
AclWI GGATC 3 cut(s) 262, 845, 858
AcsI RAATTY 4 cut(s) 533, 546, 1064, 1285
AcuI CTGAAG 3 cut(s) 209, 729, 951
AdeI CACNNNGTG 1 cut(s) 644
AfaI GTAC 4 cut(s) 45, 602, 1103, 1147
AfiI CCNNNNNNNGG 2 cut(s) 86, 1025
AgsI TTSAA 9 cut(s) 13, 77, 101, 217, 318, 565, 740, 832, 1198
AluBI AGCT 8 cut(s) 83, 145, 223, 261, 506, 785, 866, 1235
AluI AGCT 8 cut(s) 83, 145, 223, 261, 506, 785, 866, 1235
Alw21I GWGCWC 2 cut(s) 263, 1054
Alw26I GTCTC 2 cut(s) 128, 551
AlwI GGATC 3 cut(s) 262, 845, 858
AlwNI CAGNNNCTG 2 cut(s) 86, 929
Ama87I CYCGRG 1 cut(s) 1217
Aor13HI TCCGGA 1 cut(s) 1262
AoxI GGCC 2 cut(s) 582, 1316
ApeKI GCWGC 3 cut(s) 677, 1010, 1091
ApoI RAATTY 4 cut(s) 533, 546, 1064, 1285
Asp700I GAANNNNTTC 1 cut(s) 827
AsuC2I CCSGG 2 cut(s) 855, 1167
AsuHPI GGTGA 2 cut(s) 350, 1217
AvaI CYCGRG 1 cut(s) 1217
BamHI GGATCC 1 cut(s) 850
BanII GRGCYC 1 cut(s) 263
BarI GAAGNNNNNNTAC 2 cut(s) 949, 981
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 2 cut(s) 263, 1054
BbvI GCAGC 3 cut(s) 689, 997, 1078
BccI CCATC 4 cut(s) 35, 440, 505, 1243
BcnI CCSGG 2 cut(s) 855, 1167
BcoDI GTCTC 2 cut(s) 128, 551
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 2 cut(s) 805, 987
BfuAI ACCTGC 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 293
BglII AGATCT 1 cut(s) 518
BisI GCNGC 5 cut(s) 288, 678, 681, 1011, 1092
BlsI GCNGC 5 cut(s) 289, 679, 682, 1012, 1093
Bme1390I CCNGG 2 cut(s) 855, 1167
BmeT110I CYCGRG 1 cut(s) 1217
BmiI GGNNCC 2 cut(s) 6, 852
BmrFI CCNGG 2 cut(s) 855, 1167
BmrI ACTGGG 1 cut(s) 455
BmuI ACTGGG 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 20
BpmI CTGGAG 2 cut(s) 230, 1104
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 2 cut(s) 128, 434
BpuMI CCSGG 2 cut(s) 855, 1167
BsaBI GATNNNNATC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 6 cut(s) 606, 1105, 1129, 1149, 1218, 1313
BsaWI WCCGGW 1 cut(s) 1262
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 1025
Bse1I ACTGG 3 cut(s) 213, 461, 982
Bse3DI GCAATG 2 cut(s) 839, 865
Bse8I GATNNNNATC 1 cut(s) 309
BseAI TCCGGA 1 cut(s) 1262
BseDI CCNNGG 6 cut(s) 606, 1105, 1129, 1149, 1218, 1313
BseGI GGATG 1 cut(s) 530
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 86, 1025
BseMI GCAATG 2 cut(s) 839, 865
BseMII CTCAG 6 cut(s) 84, 276, 305, 498, 704, 1292
BseNI ACTGG 3 cut(s) 213, 461, 982
BseRI GAGGAG 1 cut(s) 1008
BseXI GCAGC 3 cut(s) 689, 997, 1078
BsgI GTGCAG 1 cut(s) 996
BshFI GGCC 2 cut(s) 584, 1318
BsiHKAI GWGCWC 2 cut(s) 263, 1054
BsiHKCI CYCGRG 1 cut(s) 1217
BsiSI CCGG 3 cut(s) 854, 1166, 1263
BsiWI CGTACG 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 86, 1025
BsmAI GTCTC 2 cut(s) 128, 551
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 2 cut(s) 584, 1318
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 1217
Bsp1286I GDGCHC 2 cut(s) 263, 1054
Bsp13I TCCGGA 1 cut(s) 1262
Bsp143I GATC 6 cut(s) 94, 241, 254, 518, 850, 1241
BspACI CCGC 3 cut(s) 288, 680, 1230
BspANI GGCC 2 cut(s) 584, 1318
BspCNI CTCAG 6 cut(s) 83, 275, 304, 499, 703, 1291
BspEI TCCGGA 1 cut(s) 1262
BspLI GGNNCC 2 cut(s) 6, 852
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 3 cut(s) 262, 845, 858
BspQI GCTCTTC 1 cut(s) 1059
BspTNI GGTCTC 1 cut(s) 551
BsrBI CCGCTC 1 cut(s) 290
BsrDI GCAATG 2 cut(s) 839, 865
BsrI ACTGG 3 cut(s) 213, 461, 982
BssECI CCNNGG 6 cut(s) 606, 1105, 1129, 1149, 1218, 1313
BssMI GATC 6 cut(s) 94, 241, 254, 518, 850, 1241
BssT1I CCWWGG 4 cut(s) 606, 1105, 1129, 1313
Bst4CI ACNGT 4 cut(s) 629, 668, 770, 809
Bst6I CTCTTC 1 cut(s) 1059
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 7 cut(s) 70, 262, 291, 507, 690, 1226, 1278
BstF5I GGATG 1 cut(s) 530
BstKTI GATC 6 cut(s) 97, 244, 257, 521, 853, 1244
BstMAI GTCTC 2 cut(s) 128, 551
BstMBI GATC 6 cut(s) 94, 241, 254, 518, 850, 1241
BstMWI GCNNNNNNNGC 6 cut(s) 293, 595, 791, 1058, 1067, 1097
BstSCI CCNGG 2 cut(s) 853, 1165
BstSFI CTRYAG 2 cut(s) 805, 987
BstV1I GCAGC 3 cut(s) 689, 997, 1078
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 2 cut(s) 518, 850
BstYI RGATCY 2 cut(s) 518, 850
BsuRI GGCC 2 cut(s) 584, 1318
BtsCI GGATG 1 cut(s) 530
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 4 cut(s) 206, 814, 967, 1251
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 128
CaiI CAGNNNCTG 2 cut(s) 86, 929
Csp6I GTAC 4 cut(s) 44, 601, 1102, 1146
CviAII CATG 6 cut(s) 251, 362, 494, 586, 1007, 1087
CviQI GTAC 4 cut(s) 44, 601, 1102, 1146
DdeI CTNAG 7 cut(s) 70, 262, 291, 507, 690, 1226, 1278
DpnI GATC 6 cut(s) 96, 243, 256, 520, 852, 1243
DpnII GATC 6 cut(s) 94, 241, 254, 518, 850, 1241
DraIII CACNNNGTG 1 cut(s) 644
Eam1104I CTCTTC 1 cut(s) 1059
EarI CTCTTC 1 cut(s) 1059
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 4 cut(s) 606, 1105, 1129, 1313
Eco24I GRGCYC 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 551
Eco53kI GAGCTC 1 cut(s) 261
Eco57I CTGAAG 3 cut(s) 209, 729, 951
Eco88I CYCGRG 1 cut(s) 1217
EcoICRI GAGCTC 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 533
EcoT14I CCWWGG 4 cut(s) 606, 1105, 1129, 1313
EcoT22I ATGCAT 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 4 cut(s) 606, 1105, 1129, 1313
FaeI CATG 6 cut(s) 254, 365, 497, 589, 1010, 1090
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 1219, 1251
FatI CATG 6 cut(s) 250, 361, 493, 585, 1006, 1086
FblI GTMKAC 1 cut(s) 986
Fnu4HI GCNGC 5 cut(s) 288, 678, 681, 1011, 1092
FokI GGATG 1 cut(s) 537
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 5 cut(s) 288, 678, 681, 1011, 1092
FspBI CTAG 1 cut(s) 276
GluI GCNGC 5 cut(s) 288, 678, 681, 1011, 1092
GsuI CTGGAG 2 cut(s) 230, 1104
HaeIII GGCC 2 cut(s) 584, 1318
HapII CCGG 3 cut(s) 854, 1166, 1263
Hin1II CATG 6 cut(s) 254, 365, 497, 589, 1010, 1090
HindIII AAGCTT 2 cut(s) 143, 221
HinfI GANTC 4 cut(s) 20, 374, 828, 926
HpaII CCGG 3 cut(s) 854, 1166, 1263
HphI GGTGA 2 cut(s) 350, 1217
Hpy166II GTNNAC 4 cut(s) 206, 661, 987, 1208
Hpy188I TCNGA 7 cut(s) 241, 467, 693, 719, 897, 936, 970
Hpy188III TCNNGA 7 cut(s) 98, 227, 522, 832, 999, 1121, 1263
Hpy8I GTNNAC 4 cut(s) 206, 661, 987, 1208
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 4 cut(s) 629, 668, 770, 809
HpyCH4IV ACGT 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 6 cut(s) 293, 595, 791, 1058, 1067, 1097
HpyF3I CTNAG 7 cut(s) 70, 262, 291, 507, 690, 1226, 1278
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 6 cut(s) 254, 365, 497, 589, 1010, 1090
Kpn2I TCCGGA 1 cut(s) 1262
Kzo9I GATC 6 cut(s) 94, 241, 254, 518, 850, 1241
LguI GCTCTTC 1 cut(s) 1059
LmnI GCTCC 3 cut(s) 10, 277, 1232
Lsp1109I GCAGC 3 cut(s) 689, 997, 1078
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 668, 1184
MalI GATC 6 cut(s) 96, 243, 256, 520, 852, 1243
MbiI CCGCTC 1 cut(s) 290
MboI GATC 6 cut(s) 94, 241, 254, 518, 850, 1241
MboII GAAGA 3 cut(s) 25, 353, 1046
MfeI CAATTG 2 cut(s) 612, 845
MflI RGATCY 2 cut(s) 518, 850
MhlI GDGCHC 2 cut(s) 263, 1054
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 9 cut(s) 74, 103, 523, 901, 986, 1026, 1029, 1144, 1213
Mph1103I ATGCAT 1 cut(s) 367
MroI TCCGGA 1 cut(s) 1262
MroXI GAANNNNTTC 1 cut(s) 827
MseI TTAA 6 cut(s) 141, 147, 174, 432, 729, 1041
MslI CAYNNNNRTG 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 3 cut(s) 854, 1166, 1263
MspR9I CCNGG 2 cut(s) 855, 1167
MunI CAATTG 2 cut(s) 612, 845
Mva1269I GAATGC 1 cut(s) 128
MwoI GCNNNNNNNGC 6 cut(s) 293, 595, 791, 1058, 1067, 1097
NciI CCSGG 2 cut(s) 855, 1167
NdeII GATC 6 cut(s) 94, 241, 254, 518, 850, 1241
NlaIII CATG 6 cut(s) 254, 365, 497, 589, 1010, 1090
NlaIV GGNNCC 2 cut(s) 6, 852
NsiI ATGCAT 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 43
PctI GAATGC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 3 cut(s) 20, 828, 926
Pfl23II CGTACG 1 cut(s) 43
PflFI GACNNNGTC 1 cut(s) 461
PflMI CCANNNNNTGG 1 cut(s) 86
PkrI GCNGC 5 cut(s) 289, 679, 682, 1012, 1093
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 263
PspLI CGTACG 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 6, 852
PstNI CAGNNNCTG 2 cut(s) 86, 929
PsuI RGATCY 2 cut(s) 518, 850
PsyI GACNNNGTC 1 cut(s) 461
RsaI GTAC 4 cut(s) 45, 602, 1103, 1147
RsaNI GTAC 4 cut(s) 44, 601, 1102, 1146
RseI CAYNNNNRTG 1 cut(s) 692
SacI GAGCTC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 1059
SaqAI TTAA 6 cut(s) 141, 147, 174, 432, 729, 1041
SatI GCNGC 5 cut(s) 288, 678, 681, 1011, 1092
Sau3AI GATC 6 cut(s) 94, 241, 254, 518, 850, 1241
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 2 cut(s) 855, 1167
SduI GDGCHC 2 cut(s) 263, 1054
SfcI CTRYAG 2 cut(s) 805, 987
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 2 cut(s) 107, 413
SmoI CTYRAG 2 cut(s) 107, 413
SsiI CCGC 3 cut(s) 288, 680, 1230
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 853, 1165
StyI CCWWGG 4 cut(s) 606, 1105, 1129, 1313
TaaI ACNGT 4 cut(s) 629, 668, 770, 809
TaiI ACGT 1 cut(s) 49
TaqI TCGA 3 cut(s) 93, 257, 998
TaqII GACCGA 1 cut(s) 32
TauI GCSGC 2 cut(s) 290, 683
TfiI GAWTC 3 cut(s) 20, 828, 926
Tru1I TTAA 6 cut(s) 141, 147, 174, 432, 729, 1041
Tru9I TTAA 6 cut(s) 141, 147, 174, 432, 729, 1041
TscAI CASTG 4 cut(s) 213, 814, 967, 1251
TseI GCWGC 3 cut(s) 677, 1010, 1091
TspDTI ATGAA 5 cut(s) 270, 876, 1097, 1176, 1320
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 4 cut(s) 213, 814, 967, 1251
Tth111I GACNNNGTC 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 86
XapI RAATTY 4 cut(s) 533, 546, 1064, 1285
XmiI GTMKAC 1 cut(s) 986
XmnI GAANNNNTTC 1 cut(s) 827
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.