AT4G09170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013144
Physical Location & Seq
Reverse (-)
5842945 .. 5843783
839 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09170.1

Sequence Viewer

Length: 402 bp
ATGACGCCGTCTTCTTCGGCCGTAACAACCGATGACGTCATGCTAACATGTGCATCTTGCTTCTCTACACGGTGGAGTCGCATCATCTTTTTGATCCTCTGTTCACCTCTTCTCTGCCTTTCAATACCTCTCCTCTGTGCCGTTGAGATTTTCAGCCGCCTCCTCAGCCGGATCGTGAAACCTCCACCTTCCTCCGCCGTGTCGAAAGTCCTCGTCGACGATGAAGATAATTTACGGCTCCGGCAATGTGAAGAAGGATTTGGAATGAAAGAAGAAGATGAAAATGAAGAAAGTGGTTTGCTTCATAGATACTTAGATAATCAGTTGAGTTTGGCTAGAACTATTTTTGATGATGACGGCGATCGTGATCATGATTCTATTAGGGTTCCTTTTTTGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.94

Weight (kDa)

4.56

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35430 AT4G09170
fragaria_vesca FvH4_5g31870
malus_domestica MD08G1218400.v1.1 MD15G1406800.v1.1
prunus_persica Prupe.1G555000_v2.0.a1
pyrus_communis pycom15g36320
rosa_chinensis RchiOBHm_Chr7g0227891
rosa_laevigata RLG00000001606
rosa_multiflora Rmu_co8313049.1_g000001 Rmu_sc0000347.1_g000006 Rmu_sc0005743.1_g000002
rosa_roxburghii Rroxscaffold_3G00231800
rosa_rugosa Rorug07G0244000
rosa_samantha Rh7AG397400 Rh7CG415600 Rh7DG392900
rosa_wichuraiana Rw7G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 39
AccI GTMKAC 1 cut(s) 216
AciI CCGC 2 cut(s) 157, 195
AclWI GGATC 2 cut(s) 88, 179
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 2 cut(s) 5, 36
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 1 cut(s) 123
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AlwI GGATC 2 cut(s) 88, 179
AoxI GGCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 216, 248
BbsI GAAGAC 1 cut(s) 3
BbvCI CCTCAGC 1 cut(s) 164
BceAI ACGGC 5 cut(s) 5, 125, 182, 251, 373
BclI TGATCA 1 cut(s) 367
BfaI CTAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 239, 387
BmsI GCATC 2 cut(s) 62, 90
BpiI GAAGAC 1 cut(s) 3
Bpu10I CCTNAGC 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 366
BsaHI GRCGYC 2 cut(s) 5, 36
Bse3DI GCAATG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 366
BseJI GATNNNNATC 1 cut(s) 366
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 178
BseRI GAGGAG 2 cut(s) 122, 152
BseX3I CGGCCG 1 cut(s) 18
Bsh1285I CGRYCG 2 cut(s) 21, 364
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 2 cut(s) 21, 364
BsiSI CCGG 2 cut(s) 169, 241
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 4 cut(s) 93, 171, 361, 367
BspACI CCGC 2 cut(s) 157, 195
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 177
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 239, 387
BspPI GGATC 2 cut(s) 88, 179
BsrDI GCAATG 1 cut(s) 251
BssMI GATC 4 cut(s) 93, 171, 361, 367
BssNI GRCGYC 2 cut(s) 5, 36
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 2 cut(s) 5, 36
BstDEI CTNAG 2 cut(s) 164, 313
BstKTI GATC 4 cut(s) 96, 174, 364, 370
BstMBI GATC 4 cut(s) 93, 171, 361, 367
BstMCI CGRYCG 2 cut(s) 21, 364
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 3
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 20
CciI TCATGA 1 cut(s) 370
CseI GACGC 1 cut(s) 13
CviAII CATG 3 cut(s) 40, 48, 371
CviJI RGCY 5 cut(s) 20, 156, 168, 238, 335
CviKI_1 RGCY 5 cut(s) 20, 156, 168, 238, 335
DdeI CTNAG 2 cut(s) 164, 313
DpnI GATC 4 cut(s) 95, 173, 363, 369
DpnII GATC 4 cut(s) 93, 171, 361, 367
EaeI YGGCCR 1 cut(s) 18
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EciI GGCGGA 1 cut(s) 184
EclXI CGGCCG 1 cut(s) 18
Eco52I CGGCCG 1 cut(s) 18
FaeI CATG 3 cut(s) 43, 51, 374
FaiI YATR 4 cut(s) 41, 49, 306, 372
FatI CATG 3 cut(s) 39, 47, 370
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 169, 241
HgaI GACGC 1 cut(s) 13
Hin1I GRCGYC 2 cut(s) 5, 36
Hin1II CATG 3 cut(s) 43, 51, 374
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 76, 374
HpaII CCGG 2 cut(s) 169, 241
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 2 cut(s) 104, 217
Hpy188III TCNNGA 3 cut(s) 175, 365, 371
Hpy8I GTNNAC 2 cut(s) 104, 217
Hpy99I CGWCG 2 cut(s) 218, 221
HpyAV CCTTC 2 cut(s) 198, 248
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 2 cut(s) 164, 313
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 2 cut(s) 5, 36
Hsp92II CATG 3 cut(s) 43, 51, 374
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 4 cut(s) 93, 171, 361, 367
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 2 cut(s) 182, 254
LweI GCATC 2 cut(s) 62, 90
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 22
MalI GATC 4 cut(s) 95, 173, 363, 369
MboI GATC 4 cut(s) 93, 171, 361, 367
MboII GAAGA 8 cut(s) 3, 6, 101, 236, 263, 284, 287, 299
MluCI AATT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 9 cut(s) 107, 117, 138, 143, 170, 173, 192, 202, 221
MspI CCGG 2 cut(s) 169, 241
MwoI GCNNNNNNNGC 1 cut(s) 165
NdeII GATC 4 cut(s) 93, 171, 361, 367
NlaIII CATG 3 cut(s) 43, 51, 374
NlaIV GGNNCC 2 cut(s) 239, 387
NspI RCATGY 1 cut(s) 51
PagI TCATGA 1 cut(s) 370
PciI ACATGT 1 cut(s) 47
PfeI GAWTC 1 cut(s) 374
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 158
Ple19I CGATCG 1 cut(s) 364
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PscI ACATGT 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 239, 387
PsyI GACNNNGTC 1 cut(s) 7
PvuI CGATCG 1 cut(s) 364
SalI GTCGAC 1 cut(s) 215
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 4 cut(s) 93, 171, 361, 367
SchI GAGTC 1 cut(s) 85
SetI ASST 5 cut(s) 39, 109, 130, 184, 190
SfaNI GCATC 2 cut(s) 62, 90
SgrDI CGTCGACG 1 cut(s) 215
Sse9I AATT 1 cut(s) 229
SsiI CCGC 2 cut(s) 157, 195
SspMI CTAG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 203, 216
TasI AATT 1 cut(s) 229
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 1 cut(s) 374
TspDTI ATGAA 5 cut(s) 237, 281, 293, 294, 300
Tth111I GACNNNGTC 1 cut(s) 7
XceI RCATGY 1 cut(s) 51
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 336
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.