FvH4_5g31870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013144
Physical Location & Seq
Reverse (-)
22989562 .. 22990373
812 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31870.t1

Sequence Viewer

Length: 396 bp
ATGCTAGCCGCCGCGTCCTCCTCCTCCACGTGGCTCCGAGCCCGCCGGAGCCGCTGCGTGTTTCTTATCCTCTGCTCCCCGATCCTAATCCCTTTCCTCTTCGCCACCTTCCCTCTCCTCTGCGCCGCCGAGCTCTTCCTCCGCCTCTGCCGCCTCCGAAGCCGTGGCAAGTTGGCCCGCAACGAGGCGGAGGACGATCGGGTGCGGCGATGCGAGGAAGGGCGATGCGCGGCGGAGGCGGAGGAAAGAGAAGAGATGGGGCTGCTGCAGAGGTACTTGGAGGATCAACTGTTGCTGGTCGGATCTGTGTACGATTGTGGAGAGTACGATGAAGATTTGTATCAAGGGATTCAGGGCTACGATGACAATGATTCTAACACCCCTCTTTTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.93

Weight (kDa)

4.74

Isoelectric Point (pI)

61.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35430 AT4G09170
fragaria_vesca FvH4_5g31870
malus_domestica MD08G1218400.v1.1 MD15G1406800.v1.1
prunus_persica Prupe.1G555000_v2.0.a1
pyrus_communis pycom15g36320
rosa_chinensis RchiOBHm_Chr7g0227891
rosa_laevigata RLG00000001606
rosa_multiflora Rmu_co8313049.1_g000001 Rmu_sc0000347.1_g000006 Rmu_sc0005743.1_g000002
rosa_roxburghii Rroxscaffold_3G00231800
rosa_rugosa Rorug07G0244000
rosa_samantha Rh7AG397400 Rh7CG415600 Rh7DG392900
rosa_wichuraiana Rw7G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 14, 230
AclWI GGATC 3 cut(s) 76, 291, 310
AcvI CACGTG 1 cut(s) 30
AfaI GTAC 3 cut(s) 275, 311, 326
AfiI CCNNNNNNNGG 2 cut(s) 30, 184
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 135
AlwI GGATC 3 cut(s) 76, 291, 310
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 3 cut(s) 54, 262, 265
AspLEI GCGC 2 cut(s) 125, 230
AspS9I GGNCC 1 cut(s) 175
AsuNHI GCTAGC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 43, 135
BbrPI CACGTG 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 41, 249, 252
BccI CCATC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 147
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 35, 50
BmsI GCATC 2 cut(s) 200, 215
BmtI GCTAGC 1 cut(s) 8
BsaAI YACGTR 1 cut(s) 30
BsaBI GATNNNNATC 2 cut(s) 86, 339
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 184
Bse8I GATNNNNATC 2 cut(s) 86, 339
BseDI CCNNGG 1 cut(s) 163
BseJI GATNNNNATC 2 cut(s) 86, 339
BseLI CCNNNNNNNGG 2 cut(s) 30, 184
BseRI GAGGAG 3 cut(s) 10, 13, 107
BseXI GCAGC 3 cut(s) 41, 249, 252
Bsh1236I CGCG 2 cut(s) 14, 230
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 30, 184
BsnI GGCC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 43, 135
Bsp143I GATC 4 cut(s) 81, 196, 283, 302
BspANI GGCC 1 cut(s) 176
BspFNI CGCG 2 cut(s) 14, 230
BspLI GGNNCC 2 cut(s) 35, 50
BspMAI CTGCAG 1 cut(s) 270
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 3 cut(s) 76, 291, 310
BspQI GCTCTTC 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 4 cut(s) 81, 196, 283, 302
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 3 cut(s) 104, 140, 246
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 3 cut(s) 6, 43, 178
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 1 cut(s) 163
BstFNI CGCG 2 cut(s) 14, 230
BstHHI GCGC 2 cut(s) 125, 230
BstKTI GATC 4 cut(s) 84, 199, 286, 305
BstMBI GATC 4 cut(s) 81, 196, 283, 302
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 4 cut(s) 51, 150, 159, 236
BstSFI CTRYAG 1 cut(s) 266
BstUI CGCG 2 cut(s) 14, 230
BstV1I GCAGC 3 cut(s) 41, 249, 252
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 163
BtgZI GCGATG 2 cut(s) 223, 238
Cac8I GCNNGC 3 cut(s) 6, 43, 178
CfoI GCGC 2 cut(s) 125, 230
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 3
Csp6I GTAC 3 cut(s) 274, 310, 325
CviJI RGCY 9 cut(s) 8, 34, 41, 51, 133, 162, 176, 262, 357
CviKI_1 RGCY 9 cut(s) 8, 34, 41, 51, 133, 162, 176, 262, 357
CviQI GTAC 3 cut(s) 274, 310, 325
DdeI CTNAG 1 cut(s) 393
DpnI GATC 4 cut(s) 83, 198, 285, 304
DpnII GATC 4 cut(s) 81, 196, 283, 302
Eam1104I CTCTTC 3 cut(s) 104, 140, 246
EarI CTCTTC 3 cut(s) 104, 140, 246
EciI GGCGGA 4 cut(s) 131, 203, 248, 254
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 2 cut(s) 43, 135
Eco53kI GAGCTC 1 cut(s) 133
Eco72I CACGTG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 133
EcoT38I GRGCYC 2 cut(s) 43, 135
FauI CCCGC 2 cut(s) 50, 185
FriOI GRGCYC 2 cut(s) 43, 135
FspBI CTAG 1 cut(s) 5
GlaI GCGC 2 cut(s) 124, 229
HaeIII GGCC 1 cut(s) 176
HapII CCGG 1 cut(s) 46
HgaI GACGC 1 cut(s) 3
HhaI GCGC 2 cut(s) 125, 230
Hin6I GCGC 2 cut(s) 123, 228
HinP1I GCGC 2 cut(s) 123, 228
HinfI GANTC 2 cut(s) 349, 371
HpaII CCGG 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 3 cut(s) 38, 158, 302
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 118, 212
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 150, 159, 236
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 1 cut(s) 29
HspAI GCGC 2 cut(s) 123, 228
Kzo9I GATC 4 cut(s) 81, 196, 283, 302
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 3 cut(s) 39, 48, 80
LpnPI CCDG 3 cut(s) 59, 281, 338
Lsp1109I GCAGC 3 cut(s) 41, 249, 252
LweI GCATC 2 cut(s) 200, 215
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 29
MalI GATC 4 cut(s) 83, 198, 285, 304
MboI GATC 4 cut(s) 81, 196, 283, 302
MboII GAAGA 4 cut(s) 91, 127, 263, 344
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 2 cut(s) 43, 135
MmeI TCCRAC 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 1 cut(s) 46
MvnI CGCG 2 cut(s) 14, 230
MwoI GCNNNNNNNGC 4 cut(s) 51, 150, 159, 236
NdeII GATC 4 cut(s) 81, 196, 283, 302
NheI GCTAGC 1 cut(s) 4
NlaIV GGNNCC 2 cut(s) 35, 50
NmeAIII GCCGAG 1 cut(s) 154
PciSI GCTCTTC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 2 cut(s) 349, 371
Ple19I CGATCG 1 cut(s) 199
PmaCI CACGTG 1 cut(s) 30
PmlI CACGTG 1 cut(s) 30
Ppu21I YACGTR 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 135
PspCI CACGTG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 35, 50
PspPI GGNCC 1 cut(s) 175
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 1 cut(s) 302
PvuI CGATCG 1 cut(s) 199
RsaI GTAC 3 cut(s) 275, 311, 326
RsaNI GTAC 3 cut(s) 274, 310, 325
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 140
Sau3AI GATC 4 cut(s) 81, 196, 283, 302
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 2 cut(s) 43, 135
SetI ASST 4 cut(s) 32, 110, 135, 275
SfaNI GCATC 2 cut(s) 200, 215
SfcI CTRYAG 1 cut(s) 266
SspMI CTAG 1 cut(s) 5
SstI GAGCTC 1 cut(s) 135
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 1 cut(s) 32
TauI GCSGC 7 cut(s) 11, 14, 54, 128, 153, 208, 233
TfiI GAWTC 2 cut(s) 349, 371
TseI GCWGC 3 cut(s) 54, 262, 265
TspDTI ATGAA 1 cut(s) 345
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.