Rh7AG397400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013144
Physical Location & Seq
Reverse (-)
52163195 .. 52165128
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG397400.1

Sequence Viewer

Length: 396 bp
ATGTTAGCCGCCGCATCCTCCTCGTCCACGTGGCTCCGAGCCCGCCGGAGCCGCTGCGTGTTTCTACTCCTCTGCTCCCCGATTATAATCCCTTTCCTCTTCGCCACCTTCCCTCTTCTCTGCGCCGCCGAGCTCTGCCTCCACCTCTGCCGCCGCCGCCCTGGAAAATTGGCCCACGACGAGGCGGACGCCGATCGGCTGCGCCGATGTGAAGAAGGGCGATGCGCGGAGGTGGAAGAGGAGAGGAGAGAAGAGATGGGGCTGCTGCAGAGGTACTTGGAGGATCAACTGTTACTGGTCGGATCTGTGTACGATTGTGGAGACTACGATGAAGATTTGTATCAGGAGATTCAGGACTATGATGATAATGATTCTAACACCCCTCTTTTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.05

Weight (kDa)

4.6

Isoelectric Point (pI)

73.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35430 AT4G09170
fragaria_vesca FvH4_5g31870
malus_domestica MD08G1218400.v1.1 MD15G1406800.v1.1
prunus_persica Prupe.1G555000_v2.0.a1
pyrus_communis pycom15g36320
rosa_chinensis RchiOBHm_Chr7g0227891
rosa_laevigata RLG00000001606
rosa_multiflora Rmu_co8313049.1_g000001 Rmu_sc0000347.1_g000006 Rmu_sc0005743.1_g000002
rosa_roxburghii Rroxscaffold_3G00231800
rosa_rugosa Rorug07G0244000
rosa_samantha Rh7AG397400 Rh7CG415600 Rh7DG392900
rosa_wichuraiana Rw7G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
AccII CGCG 1 cut(s) 227
AclWI GGATC 2 cut(s) 291, 310
AcvI CACGTG 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 2 cut(s) 275, 311
AfiI CCNNNNNNNGG 2 cut(s) 181, 388
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 2 cut(s) 291, 310
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 4 cut(s) 54, 199, 262, 265
AspLEI GCGC 3 cut(s) 125, 204, 227
AspS9I GGNCC 1 cut(s) 172
BanII GRGCYC 2 cut(s) 43, 135
BbrPI CACGTG 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 4 cut(s) 41, 186, 249, 252
BccI CCATC 1 cut(s) 250
BcgI CGANNNNNNTGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 2 cut(s) 35, 50
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 23, 212
BsaAI YACGTR 1 cut(s) 30
BsaBI GATNNNNATC 2 cut(s) 86, 339
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 388
Bse1I ACTGG 1 cut(s) 300
Bse8I GATNNNNATC 2 cut(s) 86, 339
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 14
BseJI GATNNNNATC 2 cut(s) 86, 339
BseLI CCNNNNNNNGG 2 cut(s) 181, 388
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 4 cut(s) 10, 59, 254, 259
BseXI GCAGC 4 cut(s) 41, 186, 249, 252
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 181, 388
BsmAI GTCTC 1 cut(s) 315
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 43, 135
Bsp143I GATC 3 cut(s) 193, 283, 302
BspANI GGCC 1 cut(s) 173
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 35, 50
BspMAI CTGCAG 1 cut(s) 270
BspPI GGATC 2 cut(s) 291, 310
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 3 cut(s) 193, 283, 302
BssNI GRCGYC 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 4 cut(s) 104, 120, 231, 246
BstACI GRCGYC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 43
BstF5I GGATG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 3 cut(s) 125, 204, 227
BstKTI GATC 3 cut(s) 196, 286, 305
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 3 cut(s) 193, 283, 302
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 51, 156
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 266
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 41, 186, 249, 252
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 1 cut(s) 173
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 3 cut(s) 125, 204, 227
Cfr13I GGNCC 1 cut(s) 172
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 274, 310
CviJI RGCY 9 cut(s) 8, 34, 41, 51, 133, 173, 199, 262, 392
CviKI_1 RGCY 9 cut(s) 8, 34, 41, 51, 133, 173, 199, 262, 392
CviQI GTAC 2 cut(s) 274, 310
DpnI GATC 3 cut(s) 195, 285, 304
DpnII GATC 3 cut(s) 193, 283, 302
Eam1104I CTCTTC 4 cut(s) 104, 120, 231, 246
EarI CTCTTC 4 cut(s) 104, 120, 231, 246
EciI GGCGGA 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 2 cut(s) 43, 135
Eco53kI GAGCTC 1 cut(s) 133
Eco72I CACGTG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 160
EcoT38I GRGCYC 2 cut(s) 43, 135
FaiI YATR 2 cut(s) 86, 360
FauI CCCGC 1 cut(s) 50
FriOI GRGCYC 2 cut(s) 43, 135
GlaI GCGC 3 cut(s) 124, 203, 226
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 46
HgaI GACGC 1 cut(s) 197
HhaI GCGC 3 cut(s) 125, 204, 227
Hin1I GRCGYC 1 cut(s) 189
Hin6I GCGC 3 cut(s) 123, 202, 225
HinP1I GCGC 3 cut(s) 123, 202, 225
HinfI GANTC 2 cut(s) 349, 371
HpaII CCGG 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 27, 310
Hpy188I TCNGA 2 cut(s) 38, 302
Hpy188III TCNNGA 2 cut(s) 344, 353
Hpy8I GTNNAC 2 cut(s) 27, 310
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 118, 209
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 156
HpySE526I ACGT 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 189
HspAI GCGC 3 cut(s) 123, 202, 225
Kzo9I GATC 3 cut(s) 193, 283, 302
LmnI GCTCC 3 cut(s) 39, 48, 80
LpnPI CCDG 6 cut(s) 59, 147, 174, 281, 329, 338
Lsp1109I GCAGC 4 cut(s) 41, 186, 249, 252
LweI GCATC 2 cut(s) 23, 212
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 291
MalI GATC 3 cut(s) 195, 285, 304
MboI GATC 3 cut(s) 193, 283, 302
MboII GAAGA 6 cut(s) 91, 107, 224, 248, 263, 344
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 2 cut(s) 43, 135
MluCI AATT 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 51, 156
NdeII GATC 3 cut(s) 193, 283, 302
NlaIV GGNNCC 2 cut(s) 35, 50
NmeAIII GCCGAG 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PfeI GAWTC 2 cut(s) 349, 371
Ple19I CGATCG 1 cut(s) 196
PmaCI CACGTG 1 cut(s) 30
PmlI CACGTG 1 cut(s) 30
Ppu21I YACGTR 1 cut(s) 30
PsiI TTATAA 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 160
PspCI CACGTG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 35, 50
PspPI GGNCC 1 cut(s) 172
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 1 cut(s) 302
PvuI CGATCG 1 cut(s) 196
RsaI GTAC 2 cut(s) 275, 311
RsaNI GTAC 2 cut(s) 274, 310
SacI GAGCTC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 193, 283, 302
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 2 cut(s) 43, 135
SetI ASST 6 cut(s) 32, 110, 135, 147, 234, 275
SfaNI GCATC 2 cut(s) 23, 212
SfcI CTRYAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 167
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 1 cut(s) 32
TasI AATT 1 cut(s) 167
TauI GCSGC 7 cut(s) 11, 14, 54, 128, 153, 156, 159
TfiI GAWTC 2 cut(s) 349, 371
TseI GCWGC 4 cut(s) 54, 199, 262, 265
TspDTI ATGAA 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.