RLG00000001606

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013144
Physical Location & Seq
Forward (+)
18147889 .. 18148690
802 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001606

Sequence Viewer

Length: 675 bp
ATGAACTCCAATTACCCCAGGCTAATGCAAATTACAACGCAGTCCGTGTCTGTCAGAGTGAAAAACCAGAAAAGTCAGAAGGTCACATCACATGGAACCACATGGTATATAAAACTCCACTCATGTGACCTCCACTCCCTCAAACACCCACTTTTGTTTGAAACCCAAAAACCCCAAAAGCCAGAGCACCAGTGCCACTATGGCCATGAAGTCGATCTCAATCTTGTCCTCCTCCGCCACCATCCAGCGGCCACGATCCTTCCTCCGATCGTCATGCTAGCCGCCGCATCCTCCTCGTCCACGTGGCTCCGAGCCCGCCGGAGCCGCTGCCTGTTTCTACTTCTCTGCTCCCCGATTATAATCCCTTTCCTCTTCGCCACCTTCCCTTTTCTCTGCGCCGCCGAGCTCTGCCTCCACCTCTGCCGCCGCCGCCGCCGCCCTGGAAAATTGGCCCACGACGAGGCTGACGCCGATCGGCTGCGCCGATGCGAAGAAGGGCGATGCGCCGAGGTGGAAGAGGAGAGGAGAGAAGAGATGGGGCTGCTGCAGAGGTACTTGGAGGATCAACTGTTGCTGGTCGGATCTGTGTACGATTGTGGAGACTACGATGAAGATTTGTATCAGGAGATTCAGGACTATGATGATAATGATTCTAACACCCCTCTTTTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.92

Weight (kDa)

6.41

Isoelectric Point (pI)

61.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35430 AT4G09170
fragaria_vesca FvH4_5g31870
malus_domestica MD08G1218400.v1.1 MD15G1406800.v1.1
prunus_persica Prupe.1G555000_v2.0.a1
pyrus_communis pycom15g36320
rosa_chinensis RchiOBHm_Chr7g0227891
rosa_laevigata RLG00000001606
rosa_multiflora Rmu_co8313049.1_g000001 Rmu_sc0000347.1_g000006 Rmu_sc0005743.1_g000002
rosa_roxburghii Rroxscaffold_3G00231800
rosa_rugosa Rorug07G0244000
rosa_samantha Rh7AG397400 Rh7CG415600 Rh7DG392900
rosa_wichuraiana Rw7G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AclWI GGATC 3 cut(s) 250, 570, 589
AcoI YGGCCR 2 cut(s) 202, 249
AcvI CACGTG 1 cut(s) 303
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 2 cut(s) 554, 590
AfiI CCNNNNNNNGG 3 cut(s) 247, 460, 667
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 2 cut(s) 17, 439
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
Alw21I GWGCWC 2 cut(s) 189, 408
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 3 cut(s) 250, 570, 589
AoxI GGCC 3 cut(s) 202, 249, 450
ApeKI GCWGC 4 cut(s) 327, 478, 541, 544
AspLEI GCGC 3 cut(s) 398, 483, 506
AspS9I GGNCC 1 cut(s) 451
AsuNHI GCTAGC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 204
BanII GRGCYC 2 cut(s) 316, 408
BbrPI CACGTG 1 cut(s) 303
Bbv12I GWGCWC 2 cut(s) 189, 408
BbvI GCAGC 4 cut(s) 314, 465, 528, 531
BccI CCATC 2 cut(s) 249, 529
BcgI CGANNNNNNTGC 4 cut(s) 256, 276, 290, 310
BciT130I CCWGG 2 cut(s) 19, 441
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 545
BglI GCCNNNNNGGC 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 19, 441
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 3 cut(s) 97, 308, 323
BmrFI CCNGG 2 cut(s) 19, 441
BmsI GCATC 3 cut(s) 296, 476, 491
BmtI GCTAGC 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 303
BsaBI GATNNNNATC 3 cut(s) 219, 359, 618
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 3 cut(s) 17, 439, 507
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 460, 667
Bse1I ACTGG 1 cut(s) 190
Bse8I GATNNNNATC 3 cut(s) 219, 359, 618
BseBI CCWGG 2 cut(s) 19, 441
BseDI CCNNGG 3 cut(s) 17, 439, 507
BseGI GGATG 2 cut(s) 241, 287
BseJI GATNNNNATC 3 cut(s) 219, 359, 618
BseLI CCNNNNNNNGG 3 cut(s) 247, 460, 667
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 4 cut(s) 221, 283, 533, 538
BseXI GCAGC 4 cut(s) 314, 465, 528, 531
Bsh1285I CGRYCG 2 cut(s) 270, 475
BshFI GGCC 3 cut(s) 204, 251, 452
BsiEI CGRYCG 2 cut(s) 270, 475
BsiHKAI GWGCWC 2 cut(s) 189, 408
BsiSI CCGG 1 cut(s) 319
BslI CCNNNNNNNGG 3 cut(s) 247, 460, 667
BsmAI GTCTC 1 cut(s) 594
BsnI GGCC 3 cut(s) 204, 251, 452
Bsp1286I GDGCHC 3 cut(s) 189, 316, 408
Bsp143I GATC 6 cut(s) 214, 255, 267, 472, 562, 581
BspANI GGCC 3 cut(s) 204, 251, 452
BspLI GGNNCC 3 cut(s) 97, 308, 323
BspMAI CTGCAG 1 cut(s) 549
BspOI GCTAGC 1 cut(s) 281
BspPI GGATC 3 cut(s) 250, 570, 589
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 3 cut(s) 17, 439, 507
BssMI GATC 6 cut(s) 214, 255, 267, 472, 562, 581
BssNI GRCGYC 1 cut(s) 468
Bst2UI CCWGG 2 cut(s) 19, 441
Bst4CI ACNGT 1 cut(s) 570
Bst6I CTCTTC 3 cut(s) 377, 510, 525
BstACI GRCGYC 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 303
BstC8I GCNNGC 2 cut(s) 279, 316
BstF5I GGATG 2 cut(s) 241, 287
BstHHI GCGC 3 cut(s) 398, 483, 506
BstKTI GATC 6 cut(s) 217, 258, 270, 475, 565, 584
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 6 cut(s) 214, 255, 267, 472, 562, 581
BstMCI CGRYCG 2 cut(s) 270, 475
BstMWI GCNNNNNNNGC 5 cut(s) 201, 324, 429, 432, 435
BstNI CCWGG 2 cut(s) 19, 441
BstSCI CCNGG 2 cut(s) 17, 439
BstSFI CTRYAG 1 cut(s) 545
BstV1I GCAGC 4 cut(s) 314, 465, 528, 531
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
BsuRI GGCC 3 cut(s) 204, 251, 452
BtgZI GCGATG 1 cut(s) 514
BtsCI GGATG 2 cut(s) 241, 287
BtsIMutI CAGTG 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 279, 316
CfoI GCGC 3 cut(s) 398, 483, 506
Cfr13I GGNCC 1 cut(s) 451
CseI GACGC 1 cut(s) 476
Csp6I GTAC 2 cut(s) 553, 589
CviAII CATG 5 cut(s) 92, 102, 123, 206, 274
CviQI GTAC 2 cut(s) 553, 589
DpnI GATC 6 cut(s) 216, 257, 269, 474, 564, 583
DpnII GATC 6 cut(s) 214, 255, 267, 472, 562, 581
EaeI YGGCCR 2 cut(s) 202, 249
Eam1104I CTCTTC 3 cut(s) 377, 510, 525
EarI CTCTTC 3 cut(s) 377, 510, 525
EciI GGCGGA 1 cut(s) 224
Ecl136II GAGCTC 1 cut(s) 406
Eco24I GRGCYC 2 cut(s) 316, 408
Eco53kI GAGCTC 1 cut(s) 406
Eco72I CACGTG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 406
EcoRII CCWGG 2 cut(s) 17, 439
EcoT38I GRGCYC 2 cut(s) 316, 408
FaeI CATG 5 cut(s) 95, 105, 126, 209, 277
FatI CATG 5 cut(s) 91, 101, 122, 205, 273
FauI CCCGC 1 cut(s) 323
FokI GGATG 2 cut(s) 228, 274
FriOI GRGCYC 2 cut(s) 316, 408
FspBI CTAG 1 cut(s) 278
GlaI GCGC 3 cut(s) 397, 482, 505
HaeIII GGCC 3 cut(s) 204, 251, 452
HapII CCGG 1 cut(s) 319
HgaI GACGC 1 cut(s) 476
HhaI GCGC 3 cut(s) 398, 483, 506
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 5 cut(s) 95, 105, 126, 209, 277
Hin6I GCGC 3 cut(s) 396, 481, 504
HinP1I GCGC 3 cut(s) 396, 481, 504
HinfI GANTC 2 cut(s) 628, 650
HpaII CCGG 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 300, 589
Hpy188I TCNGA 5 cut(s) 56, 78, 267, 311, 581
Hpy188III TCNNGA 2 cut(s) 623, 632
Hpy8I GTNNAC 2 cut(s) 300, 589
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 4 cut(s) 73, 269, 391, 488
HpyCH4III ACNGT 1 cut(s) 570
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 28, 547
HpyF10VI GCNNNNNNNGC 5 cut(s) 201, 324, 429, 432, 435
HpySE526I ACGT 1 cut(s) 302
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 5 cut(s) 95, 105, 126, 209, 277
HspAI GCGC 3 cut(s) 396, 481, 504
Kzo9I GATC 6 cut(s) 214, 255, 267, 472, 562, 581
LmnI GCTCC 3 cut(s) 312, 321, 353
Lsp1109I GCAGC 4 cut(s) 314, 465, 528, 531
LweI GCATC 3 cut(s) 296, 476, 491
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 2 cut(s) 82, 125
MalI GATC 6 cut(s) 216, 257, 269, 474, 564, 583
MboI GATC 6 cut(s) 214, 255, 267, 472, 562, 581
MboII GAAGA 5 cut(s) 364, 503, 527, 542, 623
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 3 cut(s) 189, 316, 408
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 3 cut(s) 10, 30, 446
MluNI TGGCCA 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 559
Mox20I TGGCCA 1 cut(s) 204
MscI TGGCCA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 248, 327
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 2 cut(s) 19, 441
MvaI CCWGG 2 cut(s) 19, 441
MwoI GCNNNNNNNGC 5 cut(s) 201, 324, 429, 432, 435
NdeII GATC 6 cut(s) 214, 255, 267, 472, 562, 581
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 5 cut(s) 95, 105, 126, 209, 277
NlaIV GGNNCC 3 cut(s) 97, 308, 323
NmeAIII GCCGAG 2 cut(s) 427, 532
NmuCI GTSAC 2 cut(s) 82, 125
OliI CACNNNNGTG 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 481
PfeI GAWTC 2 cut(s) 628, 650
Ple19I CGATCG 2 cut(s) 270, 475
PmaCI CACGTG 1 cut(s) 303
PmlI CACGTG 1 cut(s) 303
Ppu21I YACGTR 1 cut(s) 303
PsiI TTATAA 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 17, 439
PspCI CACGTG 1 cut(s) 303
PspGI CCWGG 2 cut(s) 17, 439
PspN4I GGNNCC 3 cut(s) 97, 308, 323
PspPI GGNCC 1 cut(s) 451
PsrI GAACNNNNNNTAC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 549
PsuI RGATCY 1 cut(s) 581
PvuI CGATCG 2 cut(s) 270, 475
RsaI GTAC 2 cut(s) 554, 590
RsaNI GTAC 2 cut(s) 553, 589
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 408
Sau3AI GATC 6 cut(s) 214, 255, 267, 472, 562, 581
Sau96I GGNCC 1 cut(s) 451
ScrFI CCNGG 2 cut(s) 19, 441
SduI GDGCHC 3 cut(s) 189, 316, 408
SetI ASST 8 cut(s) 84, 132, 305, 383, 408, 420, 513, 554
SfaNI GCATC 3 cut(s) 296, 476, 491
SfcI CTRYAG 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 3 cut(s) 10, 30, 446
SspMI CTAG 1 cut(s) 278
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 17, 439
TaaI ACNGT 1 cut(s) 570
TaiI ACGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 213
TasI AATT 3 cut(s) 10, 30, 446
TfiI GAWTC 2 cut(s) 628, 650
TscAI CASTG 1 cut(s) 197
TseFI GTSAC 2 cut(s) 82, 125
TseI GCWGC 4 cut(s) 327, 478, 541, 544
Tsp45I GTSAC 2 cut(s) 82, 125
TspDTI ATGAA 3 cut(s) 17, 222, 624
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.