MD15G1406800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013144
Physical Location & Seq
Reverse (-)
50718216 .. 50718638
423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1406800.v1.1.491

Sequence Viewer

Length: 423 bp
ATGCTCGCCGCCGCATCCTCCTCCTCCACAACATGGCTCCGAGCTCACCGTATCCGCTACCTTGTCCTTCTCCTCTGCTCTCCGATTCTCATCCCTTTCCTCTGCGCCATCTTCCCTCTGCTCTGTGCCGCCGAGCTTTGCCTACGCCTCTGCCGCCGCCGTATAAAGACTTCTCACGATGAGGCCGGGGAGGAGGAGGAGCGGATGCGCCGGTGCGAAGAAGGACGCGGCAGTGGAAGTGCGGCGGCGGCGGCGGGGAAGGAAGACGGGAAAGAAGAGATGGGGCTGCTGCAGAGGTACTTGGAGGATCAGCTGCTGCTGGTTGGATCTGTGTACGATTGCGGGGACGATGATAGTGACGATTTGTATCATGAGATTCATGACTATGATAATGATTCCAACACTACTCCTCTTTTGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.61

Weight (kDa)

4.77

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35430 AT4G09170
fragaria_vesca FvH4_5g31870
malus_domestica MD08G1218400.v1.1 MD15G1406800.v1.1
prunus_persica Prupe.1G555000_v2.0.a1
pyrus_communis pycom15g36320
rosa_chinensis RchiOBHm_Chr7g0227891
rosa_laevigata RLG00000001606
rosa_multiflora Rmu_co8313049.1_g000001 Rmu_sc0000347.1_g000006 Rmu_sc0005743.1_g000002
rosa_roxburghii Rroxscaffold_3G00231800
rosa_rugosa Rorug07G0244000
rosa_samantha Rh7AG397400 Rh7CG415600 Rh7DG392900
rosa_wichuraiana Rw7G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 33
AccBSI CCGCTC 1 cut(s) 202
AccII CGCG 1 cut(s) 228
AclWI GGATC 2 cut(s) 315, 334
AfaI GTAC 2 cut(s) 299, 335
AfiI CCNNNNNNNGG 1 cut(s) 33
AluBI AGCT 3 cut(s) 44, 136, 313
AluI AGCT 3 cut(s) 44, 136, 313
Alw21I GWGCWC 1 cut(s) 46
AlwI GGATC 2 cut(s) 315, 334
AlwNI CAGNNNCTG 1 cut(s) 316
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 4 cut(s) 286, 289, 313, 316
AspLEI GCGC 2 cut(s) 107, 210
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 46
BarI GAAGNNNNNNTAC 2 cut(s) 154, 186
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 4 cut(s) 273, 276, 300, 303
BccI CCATC 2 cut(s) 116, 274
BceAI ACGGC 1 cut(s) 144
BciVI GTATCC 1 cut(s) 62
BcnI CCSGG 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 2 cut(s) 23, 195
BpiI GAAGAC 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 187
BsaBI GATNNNNATC 2 cut(s) 89, 366
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 210
Bse8I GATNNNNATC 2 cut(s) 89, 366
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 14, 90, 210
BseJI GATNNNNATC 2 cut(s) 89, 366
BseLI CCNNNNNNNGG 1 cut(s) 33
BseRI GAGGAG 7 cut(s) 10, 13, 62, 206, 209, 212, 399
BseXI GCAGC 4 cut(s) 273, 276, 300, 303
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 2 cut(s) 186, 211
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 307, 326
BspANI GGCC 1 cut(s) 185
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 2 cut(s) 370, 379
BspLI GGNNCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 294
BspPI GGATC 2 cut(s) 315, 334
BsrBI CCGCTC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 307, 326
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 3 cut(s) 14, 90, 210
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 107, 210
BstKTI GATC 2 cut(s) 310, 329
BstMBI GATC 2 cut(s) 307, 326
BstMWI GCNNNNNNNGC 3 cut(s) 153, 248, 251
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 290
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 4 cut(s) 273, 276, 300, 303
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 3 cut(s) 14, 90, 210
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 316
CciI TCATGA 2 cut(s) 370, 379
CfoI GCGC 2 cut(s) 107, 210
Cfr10I RCCGGY 1 cut(s) 210
CseI GACGC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 298, 334
CviAII CATG 3 cut(s) 33, 371, 380
CviJI RGCY 6 cut(s) 37, 44, 136, 185, 286, 313
CviKI_1 RGCY 6 cut(s) 37, 44, 136, 185, 286, 313
CviQI GTAC 2 cut(s) 298, 334
DpnI GATC 2 cut(s) 309, 328
DpnII GATC 2 cut(s) 307, 326
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 46
FaeI CATG 3 cut(s) 36, 374, 383
FaiI YATR 5 cut(s) 34, 164, 372, 381, 387
FaqI GGGAC 1 cut(s) 359
FatI CATG 3 cut(s) 32, 370, 379
FauI CCCGC 2 cut(s) 247, 335
FokI GGATG 2 cut(s) 77, 217
FriOI GRGCYC 1 cut(s) 46
GlaI GCGC 2 cut(s) 106, 209
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 186, 211
HgaI GACGC 1 cut(s) 234
HhaI GCGC 2 cut(s) 107, 210
Hin1II CATG 3 cut(s) 36, 374, 383
Hin6I GCGC 2 cut(s) 105, 208
HinP1I GCGC 2 cut(s) 105, 208
HinfI GANTC 3 cut(s) 85, 376, 395
HpaII CCGG 2 cut(s) 186, 211
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 41, 84
Hpy188III TCNNGA 3 cut(s) 176, 371, 380
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 3 cut(s) 77, 215, 253
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 248, 251
Hsp92II CATG 3 cut(s) 36, 374, 383
HspAI GCGC 2 cut(s) 105, 208
Kzo9I GATC 2 cut(s) 307, 326
LmnI GCTCC 2 cut(s) 42, 199
LpnPI CCDG 3 cut(s) 199, 224, 305
Lsp1109I GCAGC 4 cut(s) 273, 276, 300, 303
LweI GCATC 2 cut(s) 23, 195
MaeIII GTNAC 1 cut(s) 356
MalI GATC 2 cut(s) 309, 328
MbiI CCGCTC 1 cut(s) 202
MboI GATC 2 cut(s) 307, 326
MboII GAAGA 4 cut(s) 103, 230, 275, 287
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 304, 423
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 2 cut(s) 186, 211
MspR9I CCNGG 1 cut(s) 187
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 153, 248, 251
NciI CCSGG 1 cut(s) 187
NdeII GATC 2 cut(s) 307, 326
NlaIII CATG 3 cut(s) 36, 374, 383
NlaIV GGNNCC 1 cut(s) 38
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 356
PagI TCATGA 2 cut(s) 370, 379
PfeI GAWTC 3 cut(s) 85, 376, 395
PflMI CCANNNNNTGG 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 294
PstNI CAGNNNCTG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 2 cut(s) 299, 335
RsaNI GTAC 2 cut(s) 298, 334
RseI CAYNNNNRTG 1 cut(s) 384
SacI GAGCTC 1 cut(s) 46
Sau3AI GATC 2 cut(s) 307, 326
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 46
SetI ASST 5 cut(s) 46, 63, 138, 299, 315
SfaNI GCATC 2 cut(s) 23, 195
SfcI CTRYAG 1 cut(s) 290
SgrAI CRCCGGYG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 384
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 50
TfiI GAWTC 3 cut(s) 85, 376, 395
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 4 cut(s) 286, 289, 313, 316
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 368
TspRI CASTG 1 cut(s) 238
Van91I CCANNNNNTGG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.