Rorug07G0244000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013144
Physical Location & Seq
Reverse (-)
22536616 .. 22539375
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0244000.1

Sequence Viewer

Length: 963 bp
ATGGCTCTAGAAGCCATTTCTTCCAATGAGCCCTTCAACTTCATCATCTATGACACCATCTCCGCAACCTCCTACAGCTGCCAAGACTCTCCGGCTGTGGCCGAGACCAGCTTCTTACTGGAGAACTGTGCCACTACTACTACTCCTACCATGAAAGAGGCCGGAGCTCAAGATCAGAATCAAAGTGGTATTGTAGCTTTAGAGAGTTGTACCACACTCGGAACTCGAAGCCGGAGCCTGACGTCTGTGACTCAACAGCAAGGGAGGAAGAAGAGGAAGCGAAAGCCGAGGGTTTGCAAGAACAAGGAAGAAGCCGAGACGCAGAGAATGACTCACATTGCTGTTGAGAGAAACCGCAGAAAGCAAATGAATGAGCATCTCGCTATTTTGCGCTCTCTCATGCCTGAGTCTTATGCTCAAAGGGGTGACCAAGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTTGAGCACCTTTTGCTGTCCCTTGAAGCTCAGAAGCTTCAACTTCTACAAAGCAAGGTTGTTAATGAAGATAGCAGTACTACTTCCAACTCCAAAGTTGTGCAGCCAATTATAACCCCATTCTTACAATTTTCGGGGTATGATATTTCCCAAGGTCAGTCGTCTTGGTCTCAACAGCAGAGCCCTAACAAGTTCACATCAAAAACCAAGGCAGACATAGCTGATATTGAGGTCACATTGATTGAGACCCACGCAAACCTTCGAATTGTGATGCGAAGAATTACCCCGAGACAGCTTTCAAAGTTGGTTGCAGGAGTTCAAACACTTCAACTTACCATCCTTCATCTCACTGTTAACACCATCTACCCTTTTGTTCTCTACTCCATTAGTGTCAAGATTGAAGAAGGGTGCTTACTCACTTCAGTAGATGACATAGCAGCAGCATTTTACCACATGATTAGAGTAATTGAGGAAGAAGCTGCCTTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

35.68

Weight (kDa)

7.01

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 108 - 159 7.4e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35430 AT4G09170
fragaria_vesca FvH4_5g31870
malus_domestica MD08G1218400.v1.1 MD15G1406800.v1.1
prunus_persica Prupe.1G555000_v2.0.a1
pyrus_communis pycom15g36320
rosa_chinensis RchiOBHm_Chr7g0227891
rosa_laevigata RLG00000001606
rosa_multiflora Rmu_co8313049.1_g000001 Rmu_sc0000347.1_g000006 Rmu_sc0005743.1_g000002
rosa_roxburghii Rroxscaffold_3G00231800
rosa_rugosa Rorug07G0244000
rosa_samantha Rh7AG397400 Rh7CG415600 Rh7DG392900
rosa_wichuraiana Rw7G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AatII GACGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 449
AciI CCGC 2 cut(s) 63, 355
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 876
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 2 cut(s) 211, 550
AgsI TTSAA 7 cut(s) 37, 497, 512, 771, 791, 800, 872
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
Alw21I GWGCWC 2 cut(s) 169, 480
Alw26I GTCTC 5 cut(s) 98, 311, 645, 710, 754
Ama87I CYCGRG 1 cut(s) 757
AoxI GGCC 2 cut(s) 99, 159
ApeKI GCWGC 5 cut(s) 78, 574, 908, 911, 950
AspLEI GCGC 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 437
AsuII TTCGAA 1 cut(s) 733
AvaI CYCGRG 1 cut(s) 757
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 3 cut(s) 33, 169, 656
BarI GAAGNNNNNNTAC 2 cut(s) 867, 899
Bbv12I GWGCWC 2 cut(s) 169, 480
BbvI GCAGC 5 cut(s) 65, 586, 920, 923, 937
BccI CCATC 3 cut(s) 65, 815, 839
BcoDI GTCTC 5 cut(s) 98, 311, 645, 710, 754
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 2 cut(s) 73, 438
BisI GCNGC 5 cut(s) 79, 575, 909, 912, 951
BlsI GCNGC 5 cut(s) 80, 576, 910, 913, 952
BmcAI AGTACT 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 757
BmiI GGNNCC 2 cut(s) 236, 451
BmsI GCATC 2 cut(s) 385, 732
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 733
BpuEI CTTGAG 2 cut(s) 153, 494
BsaBI GATNNNNATC 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 3 cut(s) 98, 645, 710
BsaJI CCNNGG 3 cut(s) 287, 622, 678
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 127, 157
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 287, 622, 678
BseGI GGATG 1 cut(s) 807
BseJI GATNNNNATC 1 cut(s) 177
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 396, 515
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 5 cut(s) 65, 586, 920, 923, 937
BsgI GTGCAG 1 cut(s) 593
BshFI GGCC 2 cut(s) 101, 161
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 2 cut(s) 169, 480
BsiHKCI CYCGRG 1 cut(s) 757
BsiSI CCGG 3 cut(s) 92, 162, 232
BslFI GGGAC 1 cut(s) 475
BsmAI GTCTC 5 cut(s) 98, 311, 645, 710, 754
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 2 cut(s) 101, 161
Bso31I GGTCTC 3 cut(s) 98, 645, 710
BsoBI CYCGRG 1 cut(s) 757
Bsp119I TTCGAA 1 cut(s) 733
Bsp1286I GDGCHC 4 cut(s) 33, 169, 480, 656
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 2 cut(s) 63, 355
BspANI GGCC 2 cut(s) 101, 161
BspCNI CTCAG 2 cut(s) 397, 514
BspLI GGNNCC 2 cut(s) 236, 451
BspT104I TTCGAA 1 cut(s) 733
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 3 cut(s) 98, 645, 710
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 287, 622, 678
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 2 cut(s) 622, 678
Bst4CI ACNGT 2 cut(s) 128, 823
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 484
BstBI TTCGAA 1 cut(s) 733
BstDEI CTNAG 2 cut(s) 405, 501
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 1 cut(s) 807
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 5 cut(s) 98, 311, 645, 710, 754
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 11, 484, 689
BstPI GGTNACC 1 cut(s) 425
BstSFI CTRYAG 2 cut(s) 73, 438
BstV1I GCAGC 5 cut(s) 65, 586, 920, 923, 937
BsuRI GGCC 2 cut(s) 101, 161
BtsCI GGATG 1 cut(s) 807
BtsIMutI CAGTG 1 cut(s) 819
CfoI GCGC 1 cut(s) 393
CseI GACGC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 210, 549
CviAII CATG 3 cut(s) 151, 400, 925
CviQI GTAC 2 cut(s) 210, 549
DdeI CTNAG 2 cut(s) 405, 501
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 167
Eco130I CCWWGG 2 cut(s) 622, 678
Eco24I GRGCYC 3 cut(s) 33, 169, 656
Eco31I GGTCTC 3 cut(s) 98, 645, 710
Eco53kI GAGCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 876
Eco88I CYCGRG 1 cut(s) 757
Eco91I GGTNACC 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 622, 678
EcoT38I GRGCYC 3 cut(s) 33, 169, 656
ErhI CCWWGG 2 cut(s) 622, 678
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 3 cut(s) 154, 403, 928
FaqI GGGAC 1 cut(s) 475
FatI CATG 3 cut(s) 150, 399, 924
Fnu4HI GCNGC 5 cut(s) 79, 575, 909, 912, 951
FokI GGATG 1 cut(s) 794
FriOI GRGCYC 3 cut(s) 33, 169, 656
Fsp4HI GCNGC 5 cut(s) 79, 575, 909, 912, 951
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 392
GluI GCNGC 5 cut(s) 79, 575, 909, 912, 951
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 2 cut(s) 101, 161
HapII CCGG 3 cut(s) 92, 162, 232
HgaI GACGC 1 cut(s) 328
HhaI GCGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 3 cut(s) 154, 403, 928
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 5 cut(s) 86, 178, 250, 331, 407
HpaI GTTAAC 1 cut(s) 826
HpaII CCGG 3 cut(s) 92, 162, 232
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 666, 826
Hpy188I TCNGA 3 cut(s) 177, 221, 504
Hpy188III TCNNGA 3 cut(s) 8, 170, 865
Hpy8I GTNNAC 2 cut(s) 666, 826
HpyAV CCTTC 5 cut(s) 43, 460, 740, 821, 869
HpyCH4III ACNGT 2 cut(s) 128, 823
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 297, 574, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 484, 689
HpyF3I CTNAG 2 cut(s) 405, 501
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 3 cut(s) 154, 403, 928
HspAI GCGC 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 826
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 164, 234, 469
LpnPI CCDG 8 cut(s) 104, 105, 121, 175, 245, 251, 417, 768
Lsp1109I GCAGC 5 cut(s) 65, 586, 920, 923, 937
LweI GCATC 2 cut(s) 385, 732
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 3 cut(s) 247, 425, 703
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 8 cut(s) 12, 280, 283, 320, 551, 759, 884, 956
MhlI GDGCHC 4 cut(s) 33, 169, 480, 656
MluCI AATT 5 cut(s) 579, 599, 735, 750, 936
MlyI GAGTC 4 cut(s) 80, 244, 325, 416
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 8 cut(s) 79, 151, 258, 267, 282, 445, 694, 934
MseI TTAA 3 cut(s) 534, 825, 961
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 3 cut(s) 92, 162, 232
MwoI GCNNNNNNNGC 3 cut(s) 11, 484, 689
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 154, 403, 928
NlaIV GGNNCC 2 cut(s) 236, 451
NmeAIII GCCGAG 3 cut(s) 127, 312, 340
NmuCI GTSAC 3 cut(s) 247, 425, 703
NspV TTCGAA 1 cut(s) 733
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 5 cut(s) 80, 576, 910, 913, 952
PleI GAGTC 4 cut(s) 80, 244, 325, 415
PpsI GAGTC 4 cut(s) 80, 244, 325, 415
PsiI TTATAA 1 cut(s) 584
Psp124BI GAGCTC 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 236, 451
PvuII CAGCTG 1 cut(s) 78
RsaI GTAC 2 cut(s) 211, 550
RsaNI GTAC 2 cut(s) 210, 549
SacI GAGCTC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 534, 825, 961
SatI GCNGC 5 cut(s) 79, 575, 909, 912, 951
Sau3AI GATC 1 cut(s) 172
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 4 cut(s) 80, 244, 325, 416
SduI GDGCHC 4 cut(s) 33, 169, 480, 656
SfaNI GCATC 2 cut(s) 385, 732
SfcI CTRYAG 2 cut(s) 73, 438
SfuI TTCGAA 1 cut(s) 733
SmlI CTYRAG 2 cut(s) 168, 473
SmoI CTYRAG 2 cut(s) 168, 473
Sse9I AATT 5 cut(s) 579, 599, 735, 750, 936
SsiI CCGC 2 cut(s) 63, 355
SspMI CTAG 1 cut(s) 8
SstI GAGCTC 1 cut(s) 169
StyI CCWWGG 2 cut(s) 622, 678
TaaI ACNGT 2 cut(s) 128, 823
TaiI ACGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 226, 733
TasI AATT 5 cut(s) 579, 599, 735, 750, 936
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 3 cut(s) 534, 825, 961
Tru9I TTAA 3 cut(s) 534, 825, 961
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 3 cut(s) 247, 425, 703
TseI GCWGC 5 cut(s) 78, 574, 908, 911, 950
Tsp45I GTSAC 3 cut(s) 247, 425, 703
TspDTI ATGAA 5 cut(s) 31, 167, 383, 552, 803
TspRI CASTG 1 cut(s) 826
XbaI TCTAGA 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XspI CTAG 1 cut(s) 8
ZraI GACGTC 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.