MD08G1218400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013144
Physical Location & Seq
Reverse (-)
28083052 .. 28083420
369 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1218400.v1.1.491

Sequence Viewer

Length: 369 bp
ATGGCTCCGAGCTCGCCGGATCAGCTACCTCTTTCCCCTCCTCTGCCCCCCGATTCTCATCCATTTCCTCTGCTCTGCCTCGCCGAGCTTTGCCTGCGCCTCTGCTGCCGCATCGGTAGAAAGGCGTCTCACGGCGACGACGAGGGGGAGGAGCGGATGCGCCGGTGGGAAGAAGGACGCGGCAGTGGAAGTGCAGCGGCGGTGGTGAAGGAAGAGGAGAAAGAAGAGATGGGGCTGCTGCAGAGGTACTTGGAGGATCAGTTGGTGCTGGTTGGATGTGTGTATGATTGCGGGGACGATGAGAGTGATGGCTTGTATCATGAGATTCATGACTATGATAATGATTCCAACACTACTCTTTTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.57

Weight (kDa)

4.41

Isoelectric Point (pI)

68.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35430 AT4G09170
fragaria_vesca FvH4_5g31870
malus_domestica MD08G1218400.v1.1 MD15G1406800.v1.1
prunus_persica Prupe.1G555000_v2.0.a1
pyrus_communis pycom15g36320
rosa_chinensis RchiOBHm_Chr7g0227891
rosa_laevigata RLG00000001606
rosa_multiflora Rmu_co8313049.1_g000001 Rmu_sc0000347.1_g000006 Rmu_sc0005743.1_g000002
rosa_roxburghii Rroxscaffold_3G00231800
rosa_rugosa Rorug07G0244000
rosa_samantha Rh7AG397400 Rh7CG415600 Rh7DG392900
rosa_wichuraiana Rw7G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AccII CGCG 1 cut(s) 180
AciI CCGC 6 cut(s) 109, 154, 180, 197, 200, 291
AclWI GGATC 2 cut(s) 27, 264
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 1 cut(s) 248
AluBI AGCT 3 cut(s) 12, 25, 88
AluI AGCT 3 cut(s) 12, 25, 88
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 2 cut(s) 27, 264
ApeKI GCWGC 4 cut(s) 105, 194, 235, 238
AspLEI GCGC 2 cut(s) 99, 162
AsuHPI GGTGA 1 cut(s) 217
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 4 cut(s) 92, 206, 222, 225
BccI CCATC 2 cut(s) 223, 302
BceAI ACGGC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 239
BisI GCNGC 7 cut(s) 106, 109, 181, 195, 198, 236, 239
BlsI GCNGC 7 cut(s) 107, 110, 182, 196, 199, 237, 240
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 120, 147
BsaBI GATNNNNATC 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bse118I RCCGGY 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 57
BseGI GGATG 3 cut(s) 58, 162, 281
BseJI GATNNNNATC 1 cut(s) 57
BseRI GAGGAG 3 cut(s) 30, 164, 230
BseXI GCAGC 4 cut(s) 92, 206, 222, 225
BsgI GTGCAG 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 2 cut(s) 17, 163
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 2 cut(s) 19, 256
BspACI CCGC 6 cut(s) 109, 154, 180, 197, 200, 291
BspFNI CGCG 1 cut(s) 180
BspHI TCATGA 2 cut(s) 319, 328
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 243
BspPI GGATC 2 cut(s) 27, 264
BsrBI CCGCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 162
BssMI GATC 2 cut(s) 19, 256
BssNI GRCGYC 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 207, 219
BstACI GRCGYC 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 14, 95
BstF5I GGATG 3 cut(s) 58, 162, 281
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 2 cut(s) 99, 162
BstKTI GATC 2 cut(s) 22, 259
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 19, 256
BstMWI GCNNNNNNNGC 3 cut(s) 22, 94, 105
BstSFI CTRYAG 1 cut(s) 239
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 92, 206, 222, 225
BtsCI GGATG 3 cut(s) 58, 162, 281
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 2 cut(s) 14, 95
CciI TCATGA 2 cut(s) 319, 328
CfoI GCGC 2 cut(s) 99, 162
Cfr10I RCCGGY 1 cut(s) 162
CseI GACGC 2 cut(s) 114, 186
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 320, 329
CviJI RGCY 7 cut(s) 5, 12, 25, 88, 235, 312, 365
CviKI_1 RGCY 7 cut(s) 5, 12, 25, 88, 235, 312, 365
CviQI GTAC 1 cut(s) 247
DpnI GATC 2 cut(s) 21, 258
DpnII GATC 2 cut(s) 19, 256
Eam1104I CTCTTC 2 cut(s) 207, 219
EarI CTCTTC 2 cut(s) 207, 219
Ecl136II GAGCTC 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 2 cut(s) 323, 332
FaiI YATR 4 cut(s) 285, 321, 330, 336
FaqI GGGAC 1 cut(s) 308
FatI CATG 2 cut(s) 319, 328
FauI CCCGC 1 cut(s) 284
Fnu4HI GCNGC 7 cut(s) 106, 109, 181, 195, 198, 236, 239
FokI GGATG 3 cut(s) 45, 169, 288
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 7 cut(s) 106, 109, 181, 195, 198, 236, 239
GlaI GCGC 2 cut(s) 98, 161
GluI GCNGC 7 cut(s) 106, 109, 181, 195, 198, 236, 239
HapII CCGG 2 cut(s) 17, 163
HgaI GACGC 2 cut(s) 114, 186
HhaI GCGC 2 cut(s) 99, 162
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 2 cut(s) 323, 332
Hin6I GCGC 2 cut(s) 97, 160
HinP1I GCGC 2 cut(s) 97, 160
HinfI GANTC 3 cut(s) 53, 325, 344
HpaII CCGG 2 cut(s) 17, 163
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 320, 329
Hpy99I CGWCG 2 cut(s) 140, 143
HpyAV CCTTC 2 cut(s) 167, 202
HpyCH4V TGCA 2 cut(s) 194, 241
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 94, 105
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 2 cut(s) 323, 332
HspAI GCGC 2 cut(s) 97, 160
Kzo9I GATC 2 cut(s) 19, 256
LmnI GCTCC 2 cut(s) 10, 151
LpnPI CCDG 4 cut(s) 30, 107, 176, 254
Lsp1109I GCAGC 4 cut(s) 92, 206, 222, 225
LweI GCATC 2 cut(s) 120, 147
MalI GATC 2 cut(s) 21, 258
MbiI CCGCTC 1 cut(s) 154
MboI GATC 2 cut(s) 19, 256
MboII GAAGA 3 cut(s) 182, 224, 236
MhlI GDGCHC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 17, 163
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 22, 94, 105
NdeII GATC 2 cut(s) 19, 256
NlaIII CATG 2 cut(s) 323, 332
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 109
PagI TCATGA 2 cut(s) 319, 328
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 3 cut(s) 53, 325, 344
PkrI GCNGC 7 cut(s) 107, 110, 182, 196, 199, 237, 240
Psp124BI GAGCTC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 243
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 14
SatI GCNGC 7 cut(s) 106, 109, 181, 195, 198, 236, 239
Sau3AI GATC 2 cut(s) 19, 256
SduI GDGCHC 1 cut(s) 14
SetI ASST 5 cut(s) 14, 27, 31, 90, 248
SfaNI GCATC 2 cut(s) 120, 147
SfcI CTRYAG 1 cut(s) 239
SgrAI CRCCGGYG 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 333
SsiI CCGC 6 cut(s) 109, 154, 180, 197, 200, 291
SstI GAGCTC 1 cut(s) 14
TauI GCSGC 3 cut(s) 111, 183, 200
TfiI GAWTC 3 cut(s) 53, 325, 344
TscAI CASTG 1 cut(s) 190
TseI GCWGC 4 cut(s) 105, 194, 235, 238
TspDTI ATGAA 1 cut(s) 317
TspRI CASTG 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.