Prupe.1G555000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013144
Physical Location & Seq
Forward (+)
45315577 .. 45316631
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G555000.1

Sequence Viewer

Length: 585 bp
ATGACGCCCACATGTATAAAAATCCCCACTCATGTAATCCTCCACTCCCCCACTTTGAAACCCAAAGCAGCTTCTGCAGCGCACAGCCGTTACCAAAAAAGACGCGATGAAGTCAATCTCAATCTCCGAAATCCAACGGCCACGATCTCTCCCTCCCCTTCCCCTTTCCCAATCCTCGCGACGCCTCTGATCATGTTAGCCGCCGCCTCCTCCTCAACCACATGGCTCCGAGCTCGCCGAAGCCGCTACCTCTTCCTCCTCATCTGCTCTCCGATTCTCATCCCCTTTCTCTGCGCCACTTTCCCTTTCCTCTGCGCCGCCGAGCTTTGCCTCCGGCTCTGTCGCCGCCGCCGTATAAAGAATGCTCACGGCGCCGACGAGGAGGTGGAGGAACGGCTACGGCGATGCGAAGAAGGACGCGGCGGCGAGAGAGAAGAGATGGGGCTGCTGCAGAGGTATTTGGAGGATCAGTTGCTGCTCGTTGGATCTGTGTATGATTGTGGGGATGATGATGTTGATGATCGTTTGTATCATGAGATTCATGACTATGATAATGATTCCAAAACTACTCCTCTTTTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.0

Weight (kDa)

7.6

Isoelectric Point (pI)

69.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35430 AT4G09170
fragaria_vesca FvH4_5g31870
malus_domestica MD08G1218400.v1.1 MD15G1406800.v1.1
prunus_persica Prupe.1G555000_v2.0.a1
pyrus_communis pycom15g36320
rosa_chinensis RchiOBHm_Chr7g0227891
rosa_laevigata RLG00000001606
rosa_multiflora Rmu_co8313049.1_g000001 Rmu_sc0000347.1_g000006 Rmu_sc0005743.1_g000002
rosa_roxburghii Rroxscaffold_3G00231800
rosa_rugosa Rorug07G0244000
rosa_samantha Rh7AG397400 Rh7CG415600 Rh7DG392900
rosa_wichuraiana Rw7G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AccII CGCG 3 cut(s) 105, 179, 420
AciI CCGC 8 cut(s) 201, 204, 244, 318, 346, 349, 420, 423
AclWI GGATC 2 cut(s) 474, 493
AcoI YGGCCR 1 cut(s) 138
AcyI GRCGYC 3 cut(s) 5, 182, 372
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 3 cut(s) 71, 233, 325
AluI AGCT 3 cut(s) 71, 233, 325
Alw21I GWGCWC 1 cut(s) 235
AlwI GGATC 2 cut(s) 474, 493
AlwNI CAGNNNCTG 2 cut(s) 74, 475
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 5 cut(s) 68, 77, 445, 448, 475
AspLEI GCGC 4 cut(s) 82, 296, 317, 374
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 5 cut(s) 80, 89, 432, 435, 462
BccI CCATC 1 cut(s) 433
BceAI ACGGC 6 cut(s) 72, 153, 336, 385, 410, 416
BclI TGATCA 1 cut(s) 189
BfmI CTRYAG 2 cut(s) 75, 449
BfoI RGCGCY 1 cut(s) 375
BmiI GGNNCC 2 cut(s) 227, 373
BmsI GCATC 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 3 cut(s) 5, 182, 372
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 455, 485
Bse8I GATNNNNATC 1 cut(s) 278
BseGI GGATG 2 cut(s) 279, 511
BseJI GATNNNNATC 1 cut(s) 278
BseRI GAGGAG 5 cut(s) 199, 202, 248, 395, 561
BseXI GCAGC 5 cut(s) 80, 89, 432, 435, 462
Bsh1236I CGCG 3 cut(s) 105, 179, 420
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 334
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 5 cut(s) 144, 189, 466, 485, 520
Bsp68I TCGCGA 1 cut(s) 179
BspACI CCGC 8 cut(s) 201, 204, 244, 318, 346, 349, 420, 423
BspANI GGCC 1 cut(s) 140
BspFNI CGCG 3 cut(s) 105, 179, 420
BspHI TCATGA 2 cut(s) 532, 541
BspLI GGNNCC 2 cut(s) 227, 373
BspMAI CTGCAG 2 cut(s) 79, 453
BspPI GGATC 2 cut(s) 474, 493
BspT107I GGYRCC 1 cut(s) 371
BssMI GATC 5 cut(s) 144, 189, 466, 485, 520
BssNI GRCGYC 3 cut(s) 5, 182, 372
Bst6I CTCTTC 2 cut(s) 257, 429
BstACI GRCGYC 3 cut(s) 5, 182, 372
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 235
BstF5I GGATG 2 cut(s) 279, 511
BstFNI CGCG 3 cut(s) 105, 179, 420
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 4 cut(s) 82, 296, 317, 374
BstKTI GATC 5 cut(s) 147, 192, 469, 488, 523
BstMBI GATC 5 cut(s) 144, 189, 466, 485, 520
BstMWI GCNNNNNNNGC 4 cut(s) 74, 77, 243, 371
BstNSI RCATGY 1 cut(s) 15
BstSFI CTRYAG 2 cut(s) 75, 449
BstUI CGCG 3 cut(s) 105, 179, 420
BstV1I GCAGC 5 cut(s) 80, 89, 432, 435, 462
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BsuRI GGCC 1 cut(s) 140
BtgZI GCGATG 2 cut(s) 120, 418
BtsCI GGATG 2 cut(s) 279, 511
BtuMI TCGCGA 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 2 cut(s) 74, 475
CciI TCATGA 2 cut(s) 532, 541
CfoI GCGC 4 cut(s) 82, 296, 317, 374
CseI GACGC 4 cut(s) 13, 111, 190, 426
CviAII CATG 6 cut(s) 12, 32, 193, 222, 533, 542
DinI GGCGCC 1 cut(s) 373
DpnI GATC 5 cut(s) 146, 191, 468, 487, 522
DpnII GATC 5 cut(s) 144, 189, 466, 485, 520
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 2 cut(s) 257, 429
EarI CTCTTC 2 cut(s) 257, 429
Ecl136II GAGCTC 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 235
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
FaeI CATG 6 cut(s) 15, 35, 196, 225, 536, 545
FatI CATG 6 cut(s) 11, 31, 192, 221, 532, 541
FbaI TGATCA 1 cut(s) 189
FokI GGATG 2 cut(s) 266, 518
FriOI GRGCYC 1 cut(s) 235
GlaI GCGC 4 cut(s) 81, 295, 316, 373
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 334
HgaI GACGC 4 cut(s) 13, 111, 190, 426
HhaI GCGC 4 cut(s) 82, 296, 317, 374
Hin1I GRCGYC 3 cut(s) 5, 182, 372
Hin1II CATG 6 cut(s) 15, 35, 196, 225, 536, 545
Hin6I GCGC 4 cut(s) 80, 294, 315, 372
HinP1I GCGC 4 cut(s) 80, 294, 315, 372
HinfI GANTC 3 cut(s) 274, 538, 557
HpaII CCGG 1 cut(s) 334
Hpy188I TCNGA 4 cut(s) 128, 189, 230, 273
Hpy188III TCNNGA 3 cut(s) 178, 533, 542
Hpy99I CGWCG 2 cut(s) 184, 380
HpyAV CCTTC 2 cut(s) 168, 407
HpyCH4V TGCA 2 cut(s) 77, 451
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 77, 243, 371
Hsp92I GRCGYC 3 cut(s) 5, 182, 372
Hsp92II CATG 6 cut(s) 15, 35, 196, 225, 536, 545
HspAI GCGC 4 cut(s) 80, 294, 315, 372
KasI GGCGCC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 5 cut(s) 144, 189, 466, 485, 520
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 1 cut(s) 347
Lsp1109I GCAGC 5 cut(s) 80, 89, 432, 435, 462
LweI GCATC 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 89
MalI GATC 5 cut(s) 146, 191, 468, 487, 522
MboI GATC 5 cut(s) 144, 189, 466, 485, 520
MboII GAAGA 3 cut(s) 244, 422, 446
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 235
Mly113I GGCGCC 1 cut(s) 372
MmeI TCCRAC 2 cut(s) 158, 463
MslI CAYNNNNRTG 1 cut(s) 546
MspI CCGG 1 cut(s) 334
Mva1269I GAATGC 1 cut(s) 367
MvnI CGCG 3 cut(s) 105, 179, 420
MwoI GCNNNNNNNGC 4 cut(s) 74, 77, 243, 371
NarI GGCGCC 1 cut(s) 372
NdeII GATC 5 cut(s) 144, 189, 466, 485, 520
NlaIII CATG 6 cut(s) 15, 35, 196, 225, 536, 545
NlaIV GGNNCC 2 cut(s) 227, 373
NmeAIII GCCGAG 1 cut(s) 346
NruI TCGCGA 1 cut(s) 179
NspI RCATGY 1 cut(s) 15
PagI TCATGA 2 cut(s) 532, 541
PciI ACATGT 1 cut(s) 11
PcsI WCGNNNNNNNCGW 3 cut(s) 349, 375, 400
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 3 cut(s) 274, 538, 557
PluTI GGCGCC 1 cut(s) 375
PscI ACATGT 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 227, 373
PstI CTGCAG 2 cut(s) 79, 453
PstNI CAGNNNCTG 2 cut(s) 74, 475
PsuI RGATCY 1 cut(s) 485
RruI TCGCGA 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 546
SacI GAGCTC 1 cut(s) 235
Sau3AI GATC 5 cut(s) 144, 189, 466, 485, 520
SduI GDGCHC 1 cut(s) 235
SetI ASST 6 cut(s) 73, 235, 252, 327, 387, 458
SfaNI GCATC 1 cut(s) 395
SfcI CTRYAG 2 cut(s) 75, 449
SfoI GGCGCC 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 546
SsiI CCGC 8 cut(s) 201, 204, 244, 318, 346, 349, 420, 423
SspDI GGCGCC 1 cut(s) 371
SstI GAGCTC 1 cut(s) 235
TauI GCSGC 8 cut(s) 203, 206, 246, 320, 348, 351, 423, 426
TfiI GAWTC 3 cut(s) 274, 538, 557
TseI GCWGC 5 cut(s) 68, 77, 445, 448, 475
TspDTI ATGAA 2 cut(s) 123, 530
XceI RCATGY 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.