AT4G09620
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008740
Physical Location & Seq
Reverse (-)
6076805 .. 6079151
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09620.1

Sequence Viewer

Length: 639 bp
ATGGAGATGGTGGGAAACTCGTTGGCTTCACCTTTGGCAACATTGGGTTCAGCCAAATGCTTCCGCCACTCTGCAGTTGATCTTGTAACATACACTAATGTTTTACCATTAAGATTGAACTCGTCGTATCATGGTGTTAATGGAGGCGTAAGGACATCTTCATATTCGCGAAGCAAGTGGATAGTGTTTTGTTCAACAACACAAGTGGAAACCTCTAATGAAGATCCAAATATATGGGAAGAATGCAAAGAAGCTTTGTCTTGTTTTGATTTCAGTGTTGAGGAGAAAGACAAGATACTAGGGAAAGCGTTTGGTCATATCCACTCTCCGTACTGGACCGAAGAACGAGTGAAAGAGAATCCAAAGGTGGAAACTTTGAATCAAATACTAGAGTTCCTTAGAAGTCTTGGTTTATCAGACGAAGATCTTCATAAGGTGATGAAGAAATTCCCGGAAGTACTTGGTTGCAGTCTTGAAGAGGAGATGAAACCAAACATTGGGATTTTGGAAAACCAATGGGGGATTACGGGTAAGCAACTACGAAATCTGTTGCTTCGGAATCCGAAAGTGTTGGGATATAATGTGGATTGTAAAGGAGATTGTGTTGCTCAATGCACTCGGTGTTGGGTTCGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

212

Amino Acids

24.01

Weight (kDa)

6.23

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 124 - 196 1.8e-10 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 497
AccII CGCG 1 cut(s) 169
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 446
AdeI CACNNNGTG 1 cut(s) 621
AfaI GTAC 2 cut(s) 332, 459
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 4 cut(s) 118, 195, 379, 476
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
AlwI GGATC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 2 cut(s) 426, 446
AspS9I GGNCC 1 cut(s) 336
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 21, 448
AvaII GGWCC 1 cut(s) 336
BcnI CCSGG 1 cut(s) 452
BfaI CTAG 2 cut(s) 299, 389
BfmI CTRYAG 1 cut(s) 72
BglII AGATCT 1 cut(s) 424
BmcAI AGTACT 1 cut(s) 459
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 452
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 497
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 2 cut(s) 296, 494
Bsh1236I CGCG 1 cut(s) 169
BsiSI CCGG 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 497
BsmI GAATGC 1 cut(s) 248
Bsp143I GATC 3 cut(s) 79, 223, 424
Bsp68I TCGCGA 1 cut(s) 169
BspACI CCGC 1 cut(s) 64
BspFNI CGCG 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 338
BssMI GATC 3 cut(s) 79, 223, 424
Bst6I CTCTTC 1 cut(s) 471
BstDEI CTNAG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 169
BstKTI GATC 3 cut(s) 82, 226, 427
BstMBI GATC 3 cut(s) 79, 223, 424
BstSCI CCNGG 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 169
BstX2I RGATCY 2 cut(s) 223, 424
BstXI CCANNNNNNTGG 1 cut(s) 234
BstYI RGATCY 2 cut(s) 223, 424
BtsIMutI CAGTG 1 cut(s) 280
BtuMI TCGCGA 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 336
Csp6I GTAC 2 cut(s) 331, 458
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 1 cut(s) 131
CviJI RGCY 3 cut(s) 26, 53, 254
CviKI_1 RGCY 3 cut(s) 26, 53, 254
CviQI GTAC 2 cut(s) 331, 458
DdeI CTNAG 1 cut(s) 398
DpnI GATC 3 cut(s) 81, 225, 426
DpnII GATC 3 cut(s) 79, 223, 424
DraIII CACNNNGTG 1 cut(s) 621
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
EciI GGCGGA 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 336
FaeI CATG 1 cut(s) 134
FaiI YATR 8 cut(s) 91, 132, 163, 233, 235, 318, 432, 579
FalI AAGNNNNNCTT 2 cut(s) 142, 174
FatI CATG 1 cut(s) 130
FspBI CTAG 2 cut(s) 299, 389
HapII CCGG 1 cut(s) 452
Hin1II CATG 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 3 cut(s) 358, 379, 559
HpaII CCGG 1 cut(s) 452
HphI GGTGA 2 cut(s) 21, 448
Hpy188I TCNGA 3 cut(s) 418, 558, 564
Hpy188III TCNNGA 2 cut(s) 168, 473
Hpy99I CGWCG 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 74, 246, 468, 615
HpyF3I CTNAG 1 cut(s) 398
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 3 cut(s) 79, 223, 424
LpnPI CCDG 2 cut(s) 319, 465
MaeI CTAG 2 cut(s) 299, 389
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 81, 225, 426
MboI GATC 3 cut(s) 79, 223, 424
MboII GAAGA 8 cut(s) 150, 233, 251, 353, 419, 434, 454, 488
MflI RGATCY 2 cut(s) 223, 424
MluCI AATT 1 cut(s) 446
MnlI CCTC 4 cut(s) 137, 223, 274, 472
MroXI GAANNNNTTC 2 cut(s) 426, 446
MseI TTAA 2 cut(s) 110, 138
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 452
Mva1269I GAATGC 1 cut(s) 248
MvnI CGCG 1 cut(s) 169
NciI CCSGG 1 cut(s) 452
NdeII GATC 3 cut(s) 79, 223, 424
NlaIII CATG 1 cut(s) 134
NruI TCGCGA 1 cut(s) 169
PctI GAATGC 1 cut(s) 248
PdmI GAANNNNTTC 2 cut(s) 426, 446
PfeI GAWTC 3 cut(s) 358, 379, 559
PflMI CCANNNNNTGG 1 cut(s) 497
PfoI TCCNGGA 1 cut(s) 450
PspPI GGNCC 1 cut(s) 336
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 2 cut(s) 223, 424
RruI TCGCGA 1 cut(s) 169
RsaI GTAC 2 cut(s) 332, 459
RsaNI GTAC 2 cut(s) 331, 458
SaqAI TTAA 2 cut(s) 110, 138
Sau3AI GATC 3 cut(s) 79, 223, 424
Sau96I GGNCC 1 cut(s) 336
ScaI AGTACT 1 cut(s) 459
ScrFI CCNGG 1 cut(s) 452
SetI ASST 5 cut(s) 34, 215, 256, 369, 438
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 1 cut(s) 336
Sse9I AATT 1 cut(s) 446
SsiI CCGC 1 cut(s) 64
SspMI CTAG 2 cut(s) 299, 389
StyD4I CCNGG 1 cut(s) 450
TaqII GACCGA 1 cut(s) 353
TasI AATT 1 cut(s) 446
TatI WGTACW 1 cut(s) 457
TfiI GAWTC 3 cut(s) 358, 379, 559
Tru1I TTAA 2 cut(s) 110, 138
Tru9I TTAA 2 cut(s) 110, 138
TscAI CASTG 1 cut(s) 280
TspDTI ATGAA 5 cut(s) 150, 234, 419, 455, 500
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 336
XapI RAATTY 1 cut(s) 446
XmnI GAANNNNTTC 2 cut(s) 426, 446
XspI CTAG 2 cut(s) 299, 389
ZrmI AGTACT 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.