FvH4_5g27630
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008740
Physical Location & Seq
Reverse (-)
18834123 .. 18837304
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27630.t1

Sequence Viewer

Length: 645 bp
ATGATGCTCGGACGATCCTTCGCCTCTCCATTGCTACCCAATGATTATGCAATACGCTTTTGCTTTACCACTCCTGATATTATAATTGCTGCACCAAATATCAGAGATCTACATGTGAATTGTTTGTCACAAAATTTGAATAGAGCAGCTTGTGCACCAAGTACTTCTAAGAAGAAATGGGTATTGCATTCAACAGCAAAATTTGAAAGTGTGACTTTGACTGATGATGACAGGAAGACATTAGAAGCATGTCGTGATGCTCTTTCTGCATTGAGTATCAGTAATGAAGAGGGAGACAAGATACTTGGGAAAGCTTTTGGTCTTATTCATTCACCCTACTGGGGTGAAGAAAGAAAGAATAAAATTCCAAAATTTGAGATTGTATGTGAAAAAATGGACTACCTTAGGAGTTTAAACCTGTCTAACGATGATCTGAGTAAGTTGCTTAAAAAATTTCCAGAAGTTCTTGGATGTGACCTTGAACATGAGCTGAAAACCAATGTCCAAGTTTTGGAAAAGCAATGGGGAATAAAAGGAAAATCTCTACGAAATCTCCTGCTTCGAAATCCAAGAGTGTTGGGTTACAATGTTGATTGCAAGGGAGATTGTATGGCACAATGCACCCGTTGCTGGGTTAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

215

Amino Acids

24.31

Weight (kDa)

8.77

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 132 - 196 9.4e-09 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 511
AclWI GGATC 1 cut(s) 9
AcsI RAATTY 5 cut(s) 133, 200, 363, 371, 452
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 4 cut(s) 341, 511, 630, 631
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 4 cut(s) 139, 192, 206, 482
AluBI AGCT 3 cut(s) 149, 314, 490
AluI AGCT 3 cut(s) 149, 314, 490
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 288
Alw44I GTGCAC 1 cut(s) 153
AlwI GGATC 1 cut(s) 9
ApaLI GTGCAC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 89, 146
ApoI RAATTY 5 cut(s) 133, 200, 363, 371, 452
AsuHPI GGTGA 2 cut(s) 324, 356
AsuII TTCGAA 1 cut(s) 562
AxyI CCTNAGG 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 76, 158
BcoDI GTCTC 1 cut(s) 288
BglII AGATCT 1 cut(s) 106
BisI GCNGC 2 cut(s) 90, 147
BlsI GCNGC 2 cut(s) 91, 148
BmcAI AGTACT 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 562
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 511, 630, 631
Bse1I ACTGG 1 cut(s) 344
Bse21I CCTNAGG 1 cut(s) 404
Bse3DI GCAATG 2 cut(s) 29, 527
BseGI GGATG 1 cut(s) 476
BseLI CCNNNNNNNGG 4 cut(s) 341, 511, 630, 631
BseMI GCAATG 2 cut(s) 29, 527
BseMII CTCAG 1 cut(s) 425
BseNI ACTGG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 2 cut(s) 76, 158
BseYI CCCAGC 1 cut(s) 630
BsgI GTGCAG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 157
BslI CCNNNNNNNGG 4 cut(s) 341, 511, 630, 631
BsmAI GTCTC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 187
Bsp119I TTCGAA 1 cut(s) 562
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 3 cut(s) 14, 106, 430
BspCNI CTCAG 1 cut(s) 426
BspPI GGATC 1 cut(s) 9
BspT104I TTCGAA 1 cut(s) 562
BsrDI GCAATG 2 cut(s) 29, 527
BsrI ACTGG 1 cut(s) 344
BssMI GATC 3 cut(s) 14, 106, 430
Bst6I CTCTTC 1 cut(s) 282
BstAPI GCANNNNNTGC 2 cut(s) 152, 627
BstBI TTCGAA 1 cut(s) 562
BstDEI CTNAG 3 cut(s) 168, 404, 434
BstF5I GGATG 1 cut(s) 476
BstKTI GATC 3 cut(s) 17, 109, 433
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 3 cut(s) 14, 106, 430
BstMWI GCNNNNNNNGC 3 cut(s) 152, 266, 627
BstNSI RCATGY 2 cut(s) 116, 252
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 76, 158
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
Bsu36I CCTNAGG 1 cut(s) 404
BtsCI GGATG 1 cut(s) 476
Csp6I GTAC 1 cut(s) 162
CviAII CATG 3 cut(s) 113, 249, 485
CviJI RGCY 3 cut(s) 149, 314, 490
CviKI_1 RGCY 3 cut(s) 149, 314, 490
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 3 cut(s) 168, 404, 434
DpnI GATC 3 cut(s) 16, 108, 432
DpnII GATC 3 cut(s) 14, 106, 430
DraI TTTAAA 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco81I CCTNAGG 1 cut(s) 404
FaeI CATG 3 cut(s) 116, 252, 488
FaiI YATR 7 cut(s) 48, 83, 114, 250, 385, 486, 611
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FatI CATG 3 cut(s) 112, 248, 484
Fnu4HI GCNGC 2 cut(s) 90, 147
FokI GGATG 1 cut(s) 483
Fsp4HI GCNGC 2 cut(s) 90, 147
GluI GCNGC 2 cut(s) 90, 147
GsaI CCCAGC 1 cut(s) 634
Hin1II CATG 3 cut(s) 116, 252, 488
HindIII AAGCTT 1 cut(s) 312
HphI GGTGA 2 cut(s) 324, 356
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 3 cut(s) 11, 104, 435
Hpy188III TCNNGA 3 cut(s) 74, 254, 458
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 7 cut(s) 50, 92, 155, 187, 269, 597, 621
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 266, 627
HpyF3I CTNAG 3 cut(s) 168, 404, 434
Hsp92II CATG 3 cut(s) 116, 252, 488
Kzo9I GATC 3 cut(s) 14, 106, 430
LpnPI CCDG 7 cut(s) 87, 217, 325, 431, 471, 569, 616
Lsp1109I GCAGC 2 cut(s) 76, 158
LweI GCATC 1 cut(s) 247
MaeIII GTNAC 4 cut(s) 126, 211, 473, 581
MalI GATC 3 cut(s) 16, 108, 432
MboI GATC 3 cut(s) 14, 106, 430
MboII GAAGA 4 cut(s) 184, 247, 299, 359
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 7 cut(s) 84, 118, 133, 200, 363, 371, 452
MnlI CCTC 2 cut(s) 34, 283
MseI TTAA 2 cut(s) 413, 447
MssI GTTTAAAC 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 152, 266, 627
NdeII GATC 3 cut(s) 14, 106, 430
NlaIII CATG 3 cut(s) 116, 252, 488
NmuCI GTSAC 3 cut(s) 126, 211, 473
NspI RCATGY 2 cut(s) 116, 252
NspV TTCGAA 1 cut(s) 562
PciI ACATGT 1 cut(s) 112
PctI GAATGC 1 cut(s) 187
PflMI CCANNNNNTGG 1 cut(s) 511
PkrI GCNGC 2 cut(s) 91, 148
PmeI GTTTAAAC 1 cut(s) 414
PscI ACATGT 1 cut(s) 112
PsiI TTATAA 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 630
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 413, 447
SatI GCNGC 2 cut(s) 90, 147
Sau3AI GATC 3 cut(s) 14, 106, 430
ScaI AGTACT 1 cut(s) 163
SduI GDGCHC 1 cut(s) 157
SetI ASST 6 cut(s) 151, 316, 405, 420, 480, 492
SfaNI GCATC 1 cut(s) 247
SfuI TTCGAA 1 cut(s) 562
Sse9I AATT 7 cut(s) 84, 118, 133, 200, 363, 371, 452
TaqI TCGA 1 cut(s) 562
TasI AATT 7 cut(s) 84, 118, 133, 200, 363, 371, 452
TatI WGTACW 1 cut(s) 161
Tru1I TTAA 2 cut(s) 413, 447
Tru9I TTAA 2 cut(s) 413, 447
TseFI GTSAC 3 cut(s) 126, 211, 473
TseI GCWGC 2 cut(s) 89, 146
Tsp45I GTSAC 3 cut(s) 126, 211, 473
TspDTI ATGAA 2 cut(s) 300, 317
Van91I CCANNNNNTGG 1 cut(s) 511
VneI GTGCAC 1 cut(s) 153
XapI RAATTY 5 cut(s) 133, 200, 363, 371, 452
XceI RCATGY 2 cut(s) 116, 252
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.