Rroxscaffold_3G00240220
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008740
Physical Location & Seq
Forward (+)
31902893 .. 31905893
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240220.1

Sequence Viewer

Length: 726 bp
ATGCTCGGAGTATCCTCAGCCTCTCCAATGCTAGCCCATGATTTCGCAATACGCTTTTTCTTTACCACTAACTTCTCTTCAATTCTTGTTTTGGACTTTGGATTTATGATCCAACTCTTTCAGTTTTCAACCCAATGTGATGGTTTAGAAGGCCCCGATATTATAACTGTTGCACCAAATATCGGATCTCTACATGTGAATTGTTTTTCACAAAATCTGAATAGAGCAACTTGTGCACCAAGTATCTCTAAGAAGAAATGGGTATTGCATTCAACTGCAAAATTTGAAAATGTGACTTTGACTGATGACGACAGGAAGACATTAGAAGCATGTCGTGATGCTTTGTCTGCATTGAGTATCAGTAATGAAGAGGGAAACAAGATACTTGGGAAAGCTTTTGGTCTGATTCATTCACCCTACTGGGGTGAAGAAAGAAAAAACAAAGTTCCAAAATTTGAGATTGTATGCGAAAAGATGGACTACCTTAGGAGTTTAAACCTGTCTAATGATGATCTGGGTAAGTTGCTTAAAAAATTTCCAGAAGTTCTTGGATGTAACCTTGAACATGAGCTGAAAACCAATGTCCAAGTTTTGGAAAAGGAATGGGGAATAAAAGGAAAATCTCTTCGAAATCTCCTCCTTCGAAATCCAAGGGTGTTGGGTTACAATGTTGATTGTAAGGGAGATTGTATGGCACAATGCACCCGTTGCTGGGTTCGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

241

Amino Acids

27.19

Weight (kDa)

8.29

Isoelectric Point (pI)

28.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 158 - 223 2.5e-08 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 592
AclWI GGATC 2 cut(s) 103, 193
AcsI RAATTY 3 cut(s) 281, 452, 533
AfiI CCNNNNNNNGG 5 cut(s) 182, 422, 592, 711, 712
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 5 cut(s) 81, 129, 273, 287, 563
AluBI AGCT 2 cut(s) 395, 571
AluI AGCT 2 cut(s) 395, 571
Alw21I GWGCWC 1 cut(s) 238
Alw44I GTGCAC 1 cut(s) 234
AlwI GGATC 2 cut(s) 103, 193
AoxI GGCC 1 cut(s) 151
ApaLI GTGCAC 1 cut(s) 234
ApoI RAATTY 3 cut(s) 281, 452, 533
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 405, 437
AsuII TTCGAA 2 cut(s) 628, 643
AsuNHI GCTAGC 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 238
BbvCI CCTCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 134, 469
BciVI GTATCC 1 cut(s) 22
BfaI CTAG 1 cut(s) 32
BfuI GTATCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 1 cut(s) 328
BmtI GCTAGC 1 cut(s) 35
BmuI ACTGGG 1 cut(s) 430
BpiI GAAGAC 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 2 cut(s) 628, 643
BsaJI CCNNGG 1 cut(s) 650
Bsc4I CCNNNNNNNGG 5 cut(s) 182, 422, 592, 711, 712
Bse1I ACTGG 1 cut(s) 425
Bse21I CCTNAGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 650
BseGI GGATG 1 cut(s) 557
BseLI CCNNNNNNNGG 5 cut(s) 182, 422, 592, 711, 712
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 626
BseSI GKGCMC 1 cut(s) 238
BseYI CCCAGC 1 cut(s) 711
BshFI GGCC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 238
BslI CCNNNNNNNGG 5 cut(s) 182, 422, 592, 711, 712
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 1 cut(s) 153
Bsp119I TTCGAA 2 cut(s) 628, 643
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 3 cut(s) 108, 185, 511
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 2 cut(s) 103, 193
BspT104I TTCGAA 2 cut(s) 628, 643
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 650
BssMI GATC 3 cut(s) 108, 185, 511
BssT1I CCWWGG 1 cut(s) 650
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 3 cut(s) 82, 363, 630
BstAPI GCANNNNNTGC 2 cut(s) 233, 708
BstBI TTCGAA 2 cut(s) 628, 643
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 16, 249, 485
BstF5I GGATG 1 cut(s) 557
BstKTI GATC 3 cut(s) 111, 188, 514
BstMBI GATC 3 cut(s) 108, 185, 511
BstMWI GCNNNNNNNGC 3 cut(s) 233, 347, 708
BstNSI RCATGY 2 cut(s) 197, 333
BstSLI GKGCMC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 1 cut(s) 185
Bsu36I CCTNAGG 1 cut(s) 485
BsuI GTATCC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 557
Cac8I GCNNGC 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 152
CviAII CATG 4 cut(s) 38, 194, 330, 566
CviJI RGCY 5 cut(s) 20, 35, 153, 395, 571
CviKI_1 RGCY 5 cut(s) 20, 35, 153, 395, 571
DdeI CTNAG 3 cut(s) 16, 249, 485
DpnI GATC 3 cut(s) 110, 187, 513
DpnII GATC 3 cut(s) 108, 185, 511
DraI TTTAAA 1 cut(s) 495
Eam1104I CTCTTC 3 cut(s) 82, 363, 630
EarI CTCTTC 3 cut(s) 82, 363, 630
Eco130I CCWWGG 1 cut(s) 650
Eco81I CCTNAGG 1 cut(s) 485
EcoO109I RGGNCCY 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 650
ErhI CCWWGG 1 cut(s) 650
FaeI CATG 4 cut(s) 41, 197, 333, 569
FaiI YATR 8 cut(s) 39, 107, 164, 195, 331, 466, 567, 692
FatI CATG 4 cut(s) 37, 193, 329, 565
FokI GGATG 1 cut(s) 564
FspBI CTAG 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 715
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 4 cut(s) 41, 197, 333, 569
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 1 cut(s) 406
HphI GGTGA 2 cut(s) 405, 437
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 4 cut(s) 8, 185, 219, 405
Hpy188III TCNNGA 2 cut(s) 335, 539
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 2 cut(s) 143, 650
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 6 cut(s) 173, 236, 268, 278, 350, 702
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 347, 708
HpyF3I CTNAG 3 cut(s) 16, 249, 485
Hsp92II CATG 4 cut(s) 41, 197, 333, 569
Kzo9I GATC 3 cut(s) 108, 185, 511
LpnPI CCDG 6 cut(s) 298, 406, 500, 512, 552, 697
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 3 cut(s) 292, 554, 662
MalI GATC 3 cut(s) 110, 187, 513
MboI GATC 3 cut(s) 108, 185, 511
MboII GAAGA 6 cut(s) 69, 265, 328, 380, 440, 617
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 5 cut(s) 81, 199, 281, 452, 533
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 4 cut(s) 25, 31, 364, 647
MseI TTAA 2 cut(s) 494, 528
MssI GTTTAAAC 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 233, 347, 708
NdeII GATC 3 cut(s) 108, 185, 511
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 4 cut(s) 41, 197, 333, 569
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 2 cut(s) 197, 333
NspV TTCGAA 2 cut(s) 628, 643
PciI ACATGT 1 cut(s) 193
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 406
PflMI CCANNNNNTGG 1 cut(s) 592
PmeI GTTTAAAC 1 cut(s) 495
PscI ACATGT 1 cut(s) 193
PsiI TTATAA 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 711
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 185
SaqAI TTAA 2 cut(s) 494, 528
Sau3AI GATC 3 cut(s) 108, 185, 511
Sau96I GGNCC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 238
SetI ASST 5 cut(s) 397, 486, 501, 561, 573
SfaNI GCATC 1 cut(s) 328
SfuI TTCGAA 2 cut(s) 628, 643
Sse9I AATT 5 cut(s) 81, 199, 281, 452, 533
SspMI CTAG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 3 cut(s) 628, 643, 718
TasI AATT 5 cut(s) 81, 199, 281, 452, 533
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 2 cut(s) 494, 528
Tru9I TTAA 2 cut(s) 494, 528
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 381, 398
Van91I CCANNNNNTGG 1 cut(s) 592
VneI GTGCAC 1 cut(s) 234
XapI RAATTY 3 cut(s) 281, 452, 533
XceI RCATGY 2 cut(s) 197, 333
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.