Rorug07G0181000
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0008740
Physical Location & Seq
Reverse (-)
15132246 .. 15132797
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0181000.1

Sequence Viewer

Length: 552 bp
ATGACAACCGCTGATGTACTAAACCTCGAAGGCAAGCCCATTGTTGATGAAAGACATGCTCCAGCAGACATCTTTGCCACAGGTGCAGGCCATGTCAAACCTTCAAAAGCAAATGACCCTGGGCTCATCTACGACCTAAACCCTGAAGATTACATCCCCTACTTGTGCGGTTTGAATTATATAGATGACCAGATACTGATAATTACCCAAGAAACAGTGAAATGCTCTCAAGTTGTAGCCATACCAGCAACACAGCTAAACTACCCTTCATTTACTATAAATATACTCGACCCAACTCAGTCTCAAGATTACACAAGGACGGTGACGAATGTTGGTCCAGCTAATTCCACTTACAAGTTGGATCTTTTGGTACCGAAAACAATAGGCATGACTGTGAGTCCTTCAGTGCTCACATTCACAGAGGTCGGCCAGACTATCACATACCATGTCAAGTTTGTCCCACAAAATGGTATGGGGAAGGATGTATCATTCCATCAGGGATATCTGAGATGGGTTTCTGATAAGCATTCTGTTACTAGCCCCATAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

183

Amino Acids

20.11

Weight (kDa)

5.05

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 85 - 182 8.2e-26 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 370
AccB7I CCANNNNNTGG 1 cut(s) 467
AciI CCGC 2 cut(s) 9, 168
AclWI GGATC 1 cut(s) 369
AcoI YGGCCR 1 cut(s) 427
AcuI CTGAAG 2 cut(s) 165, 387
AfaI GTAC 2 cut(s) 18, 372
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 105, 175
AhdI GACNNNNNGTC 1 cut(s) 396
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 2 cut(s) 256, 341
AluI AGCT 2 cut(s) 256, 341
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 1 cut(s) 369
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 2 cut(s) 88, 427
Asp718I GGTACC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 335
BanI GGYRCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 411
BccI CCATC 2 cut(s) 501, 504
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 537
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 335
BmeRI GACNNNNNGTC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 45
BpuEI CTTGAG 2 cut(s) 213, 288
BsaJI CCNNGG 2 cut(s) 118, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 467
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 118, 119
BseGI GGATG 2 cut(s) 153, 487
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMII CTCAG 2 cut(s) 311, 497
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 2 cut(s) 90, 429
BshNI GGYRCC 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 411
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 443
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 2 cut(s) 90, 429
Bsp1286I GDGCHC 2 cut(s) 126, 411
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 2 cut(s) 9, 168
BspANI GGCC 2 cut(s) 90, 429
BspCNI CTCAG 2 cut(s) 310, 498
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 118, 119
BssMI GATC 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 217, 322, 394
BstC8I GCNNGC 2 cut(s) 35, 88
BstDEI CTNAG 2 cut(s) 297, 506
BstF5I GGATG 2 cut(s) 153, 487
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 2 cut(s) 83, 245
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 2 cut(s) 90, 429
BtsCI GGATG 2 cut(s) 153, 487
BtsIMutI CAGTG 2 cut(s) 222, 411
Cac8I GCNNGC 2 cut(s) 35, 88
CaiI CAGNNNCTG 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 17, 371
CviAII CATG 4 cut(s) 56, 92, 388, 446
CviJI RGCY 8 cut(s) 37, 90, 124, 239, 256, 341, 429, 540
CviKI_1 RGCY 8 cut(s) 37, 90, 124, 239, 256, 341, 429, 540
CviQI GTAC 2 cut(s) 17, 371
DdeI CTNAG 2 cut(s) 297, 506
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
DriI GACNNNNNGTC 1 cut(s) 396
EaeI YGGCCR 1 cut(s) 427
Eam1105I GACNNNNNGTC 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 503
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 2 cut(s) 165, 387
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 503
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 4 cut(s) 59, 95, 391, 449
FaqI GGGAC 1 cut(s) 443
FatI CATG 4 cut(s) 55, 91, 387, 445
FokI GGATG 2 cut(s) 140, 494
FriOI GRGCYC 1 cut(s) 126
FspBI CTAG 1 cut(s) 537
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 2 cut(s) 90, 429
Hin1II CATG 4 cut(s) 59, 95, 391, 449
HinfI GANTC 1 cut(s) 397
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 507, 520
Hpy188III TCNNGA 1 cut(s) 305
HpyAV CCTTC 5 cut(s) 23, 111, 276, 411, 472
HpyCH4III ACNGT 3 cut(s) 217, 322, 394
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 245
HpyF3I CTNAG 2 cut(s) 297, 506
Hsp92II CATG 4 cut(s) 59, 95, 391, 449
KpnI GGTACC 1 cut(s) 374
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 64
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 322, 532
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 1 cut(s) 158
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 126, 411
MluCI AATT 3 cut(s) 175, 201, 343
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 2 cut(s) 35, 415
MslI CAYNNNNRTG 1 cut(s) 392
MspA1I CMGCKG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 83, 245
NdeII GATC 1 cut(s) 361
NlaIII CATG 4 cut(s) 59, 95, 391, 449
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 322
NspI RCATGY 1 cut(s) 59
PasI CCCWGGG 1 cut(s) 119
PctI GAATGC 1 cut(s) 526
PflMI CCANNNNNTGG 1 cut(s) 467
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 2 cut(s) 18, 372
RsaNI GTAC 2 cut(s) 17, 371
RseI CAYNNNNRTG 1 cut(s) 392
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 2 cut(s) 126, 411
SetI ASST 7 cut(s) 27, 85, 103, 138, 258, 343, 426
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 228, 303
SmoI CTYRAG 2 cut(s) 228, 303
Sse9I AATT 3 cut(s) 175, 201, 343
SsiI CCGC 2 cut(s) 9, 168
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 3 cut(s) 217, 322, 394
TaqI TCGA 2 cut(s) 27, 288
TasI AATT 3 cut(s) 175, 201, 343
TatI WGTACW 1 cut(s) 16
TscAI CASTG 2 cut(s) 222, 411
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 63, 258
TspRI CASTG 2 cut(s) 222, 411
Van91I CCANNNNNTGG 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 335
XceI RCATGY 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.