Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008740

Physical Location & Seq

Genomic Coordinates Forward (+)

6883751 .. 6888271

Gene Structure 4521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCTAGGAAAATCTTTAGCTTCTCCATTGCTAACTCATGATTGTGCAACACGCTTTTGCTTTTCCACTCCTGATGTTATAAATGCTGCACCAAATATCAGATTGCCAAATGTTTCACAAAATCTGAACAGTCGGGCATACTCACCAAGTTTCTCTCCCAAAAAATGGGTGTTACATTCAACTGCAGAAATTGAAAATACAGCTTTGACTGATGAAGAGAGGAAGACATGGGAAGCATGCCAGGAAGCTATATCTGCATTTAGTATCACTATTGAAGAGGGAGACAAGATACTTGGAAAAGCATTTGGCTTGGTTCATTCACCTTACTGGGGTGAAATACGGAAAAAGGAGGTACCAACTATTGAGATTGTAAAAGAAAAACTGGACTACCTTCGGAGCTTAAGCCTCTCTGACGATGACCTATGTAAGTTGCTCAAAAAATTTCCGGAGGTTCTTGGATGTAATCTTGAAAATGAGTTGAAAACCAATGTGCAGGTCTTGGAGAAGGAATGGGGTATAAAAGGGAAATCTCTGCGTAACCTCCTCCTTCGAAATCCAAGAGTATTGGGTTACAATGTTGATTGCAAGGGAGATTGTATGGCACAATGCACACGATGCTGGGTCCGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

211

Amino Acids

23.76

Weight (kDa)

8.03

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09620 AT4G09620 AT4G09620
fragaria_vesca	FvH4_5g27630
malus_domestica	MD05G1041300.v1.1
prunus_persica	Prupe.8G057100_v2.0.a1 Prupe.8G057100_v2.0.a1 Prupe.8G057100_v2.0.a1 Prupe.8G057100_v2.0.a1 Prupe.8G057100_v2.0.a1 Prupe.8G057100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0219041
rosa_laevigata	RLG00000002307
rosa_multiflora	Rmu_sc0011122.1_g000002 Rmu_sc0042351.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240220
rosa_rugosa	Rorug07G0180900 Rorug07G0181000
rosa_samantha	Rh7AG324100 Rh7BG315600 Rh7CG341100 Rh7DG321100
rosa_wichuraiana	Rw7G027450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	484
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	165, 329
AflII	CTTAAG	1 cut(s)	400
AgsI	TTSAA	5 cut(s)	180, 194, 275, 470, 481
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	4 cut(s)	20, 203, 248, 399
AluI	AGCT	4 cut(s)	20, 203, 248, 399
Alw26I	GTCTC	1 cut(s)	276
Aor13HI	TCCGGA	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	440
Asp718I	GGTACC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	3 cut(s)	135, 312, 344
AsuII	TTCGAA	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	400
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	2 cut(s)	354, 623
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	605
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	550
BsaWI	WCCGGW	2 cut(s)	445, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 329
Bse1I	ACTGG	2 cut(s)	332, 387
Bse3DI	GCAATG	1 cut(s)	26
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	464
BseLI	CCNNNNNNNGG	2 cut(s)	165, 329
BseMI	GCAATG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	332, 387
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	618
BsgI	GTGCAG	2 cut(s)	72, 512
BshNI	GGYRCC	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	446, 625
BslI	CCNNNNNNNGG	2 cut(s)	165, 329
BsmAI	GTCTC	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	550
Bsp13I	TCCGGA	1 cut(s)	445
BspEI	TCCGGA	1 cut(s)	445
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	354, 623
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	484
BspT104I	TTCGAA	1 cut(s)	550
BspT107I	GGYRCC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	332, 387
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	210, 270
BstAFI	CTTAAG	1 cut(s)	400
BstAPI	GCANNNNNTGC	1 cut(s)	615
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	464
BstMAI	GTCTC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 615
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	464
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	238
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	622
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	3 cut(s)	38, 228, 237
CviJI	RGCY	6 cut(s)	20, 203, 248, 309, 399, 405
CviKI_1	RGCY	6 cut(s)	20, 203, 248, 309, 399, 405
CviQI	GTAC	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	210, 270
EarI	CTCTTC	2 cut(s)	210, 270
Eco47I	GGWCC	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	41, 231, 240
FaiI	YATR	9 cut(s)	39, 80, 139, 229, 238, 251, 424, 518, 599
FatI	CATG	3 cut(s)	37, 227, 236
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	471
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	1 cut(s)	87
GsaI	CCCAGC	1 cut(s)	622
HapII	CCGG	2 cut(s)	446, 625
Hin1II	CATG	3 cut(s)	41, 231, 240
HpaII	CCGG	2 cut(s)	446, 625
HphI	GGTGA	3 cut(s)	135, 312, 344
Hpy188I	TCNGA	4 cut(s)	101, 126, 396, 412
Hpy188III	TCNNGA	4 cut(s)	38, 71, 446, 467
HpyAV	CCTTC	3 cut(s)	401, 499, 557
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	7 cut(s)	47, 89, 185, 257, 493, 585, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 615
Hsp92II	CATG	3 cut(s)	41, 231, 240
Kpn2I	TCCGGA	1 cut(s)	445
KpnI	GGTACC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	396
LpnPI	CCDG	8 cut(s)	84, 227, 254, 313, 368, 459, 479, 604
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	605
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	3 cut(s)	171, 536, 569
MboII	GAAGA	3 cut(s)	227, 235, 287
MluCI	AATT	2 cut(s)	189, 440
MnlI	CCTC	7 cut(s)	213, 271, 343, 416, 442, 551, 554
MroI	TCCGGA	1 cut(s)	445
MseI	TTAA	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	42
MspCI	CTTAAG	1 cut(s)	400
MspI	CCGG	2 cut(s)	446, 625
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	254, 615
NlaIII	CATG	3 cut(s)	41, 231, 240
NlaIV	GGNNCC	2 cut(s)	354, 623
NspI	RCATGY	1 cut(s)	240
NspV	TTCGAA	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	240
PagI	TCATGA	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	88
PsiI	TTATAA	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	618
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	354, 623
PspPI	GGNCC	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	622
ScrFI	CCNGG	1 cut(s)	242
SfaNI	GCATC	1 cut(s)	605
SfcI	CTRYAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	550
SinI	GGWCC	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SphI	GCATGC	1 cut(s)	240
Sse9I	AATT	2 cut(s)	189, 440
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	550
TasI	AATT	2 cut(s)	189, 440
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	228, 305
TspGWI	ACGGA	1 cut(s)	355
Van91I	CCANNNNNTGG	1 cut(s)	165
Vha464I	CTTAAG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	240
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.