RLG00000002307
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008740
Physical Location & Seq
Forward (+)
32057647 .. 32059449
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002307

Sequence Viewer

Length: 642 bp
ATGCTTGGAGGATCCTCAGCCTCTCCATTGATAGCCCCTGATTTTGCAATACGCTTTTGCTTTACCACTCCTGATATTATAACTGTTGCACCAAATATCGGATCTCTACGTGTGAATTGTTTTTCACAAAATCTGAATAGAGCAACTTGTGCACCAAGTATTTCTAAGAAGAAATGGGTATTGCATTCAACTGCAAAATTTGAAAATATGACTTTGACTGATGACGACAGGAAGACATTAGAAGCATGTCGTGATGCTTTGTCTGCATTGAGTATCAGTAATGAAGAGGGAGACAAGATACTTGGGAAAGCTTTTGGTCTGATTCATTCACCCTACTGGGGTGAAGAAAGAAAAATCAAAGTTCCAAAATTTGAGATTTTATGCGAAAAGATGGACTACCTTAGGAGTTTAAACCTGTCTAACGATGATCTGGGTAAGTTGCTTAAAAAATTTCCAGAAGTTCTTGGATGTAACCTTGAACATGAGTTGAAAACCAATGTCCAAGTTTTGGAAAAGGAATGGGGGATAAAAGGAAAATCTCTTCGAAATCTCCTCCTTCGAAATCCAAGGGTGTTGGGTTACAATGTTGATTGTAAGGGAGATTGTATGGCACAATGCACCCGTTGCTGGGTTCGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

214

Amino Acids

23.97

Weight (kDa)

8.78

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 131 - 194 2.2e-08 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AccB7I CCANNNNNTGG 1 cut(s) 508
AclWI GGATC 3 cut(s) 6, 19, 109
AcsI RAATTY 3 cut(s) 197, 368, 449
AfiI CCNNNNNNNGG 5 cut(s) 98, 338, 508, 627, 628
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 4 cut(s) 189, 203, 479, 490
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 285
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 3 cut(s) 6, 19, 109
ApaLI GTGCAC 1 cut(s) 150
ApoI RAATTY 3 cut(s) 197, 368, 449
AsuHPI GGTGA 2 cut(s) 321, 353
AsuII TTCGAA 2 cut(s) 544, 559
AxyI CCTNAGG 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 154
BamHI GGATCC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 154
BbvCI CCTCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 2 cut(s) 544, 559
BsaAI YACGTR 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 566
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 338, 508, 627, 628
Bse1I ACTGG 1 cut(s) 341
Bse21I CCTNAGG 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 566
BseGI GGATG 1 cut(s) 473
BseLI CCNNNNNNNGG 5 cut(s) 98, 338, 508, 627, 628
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 542
BseSI GKGCMC 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 627
BsiHKAI GWGCWC 1 cut(s) 154
BslI CCNNNNNNNGG 5 cut(s) 98, 338, 508, 627, 628
BsmAI GTCTC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 184
Bsp119I TTCGAA 2 cut(s) 544, 559
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 3 cut(s) 11, 101, 427
BspCNI CTCAG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 3 cut(s) 6, 19, 109
BspT104I TTCGAA 2 cut(s) 544, 559
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 566
BssMI GATC 3 cut(s) 11, 101, 427
BssT1I CCWWGG 1 cut(s) 566
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 279, 546
BstAPI GCANNNNNTGC 2 cut(s) 149, 624
BstBAI YACGTR 1 cut(s) 110
BstBI TTCGAA 2 cut(s) 544, 559
BstDEI CTNAG 3 cut(s) 16, 165, 401
BstF5I GGATG 1 cut(s) 473
BstKTI GATC 3 cut(s) 14, 104, 430
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 3 cut(s) 11, 101, 427
BstMWI GCNNNNNNNGC 3 cut(s) 149, 263, 624
BstNSI RCATGY 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 11, 101
BstYI RGATCY 2 cut(s) 11, 101
Bsu36I CCTNAGG 1 cut(s) 401
BtsCI GGATG 1 cut(s) 473
CviAII CATG 2 cut(s) 246, 482
CviJI RGCY 3 cut(s) 20, 35, 311
CviKI_1 RGCY 3 cut(s) 20, 35, 311
DdeI CTNAG 3 cut(s) 16, 165, 401
DpnI GATC 3 cut(s) 13, 103, 429
DpnII GATC 3 cut(s) 11, 101, 427
DraI TTTAAA 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 279, 546
EarI CTCTTC 2 cut(s) 279, 546
Eco130I CCWWGG 1 cut(s) 566
Eco81I CCTNAGG 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 2 cut(s) 249, 485
FaiI YATR 6 cut(s) 80, 209, 247, 382, 483, 608
FatI CATG 2 cut(s) 245, 481
FokI GGATG 1 cut(s) 480
GsaI CCCAGC 1 cut(s) 631
Hin1II CATG 2 cut(s) 249, 485
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 1 cut(s) 322
HphI GGTGA 2 cut(s) 321, 353
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 3 cut(s) 101, 135, 321
Hpy188III TCNNGA 3 cut(s) 71, 251, 455
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 7 cut(s) 47, 89, 152, 184, 194, 266, 618
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 263, 624
HpyF3I CTNAG 3 cut(s) 16, 165, 401
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 2 cut(s) 249, 485
Kzo9I GATC 3 cut(s) 11, 101, 427
LpnPI CCDG 8 cut(s) 51, 84, 214, 322, 416, 428, 468, 613
LweI GCATC 1 cut(s) 244
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 2 cut(s) 470, 578
MalI GATC 3 cut(s) 13, 103, 429
MboI GATC 3 cut(s) 11, 101, 427
MboII GAAGA 5 cut(s) 181, 244, 296, 356, 533
MflI RGATCY 2 cut(s) 11, 101
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 4 cut(s) 115, 197, 368, 449
MnlI CCTC 4 cut(s) 25, 31, 280, 563
MseI TTAA 2 cut(s) 410, 444
MssI GTTTAAAC 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 184
MwoI GCNNNNNNNGC 3 cut(s) 149, 263, 624
NdeII GATC 3 cut(s) 11, 101, 427
NlaIII CATG 2 cut(s) 249, 485
NlaIV GGNNCC 1 cut(s) 13
NspI RCATGY 1 cut(s) 249
NspV TTCGAA 2 cut(s) 544, 559
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 508
PmeI GTTTAAAC 1 cut(s) 411
Ppu21I YACGTR 1 cut(s) 110
PsiI TTATAA 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 627
PspN4I GGNNCC 1 cut(s) 13
PsuI RGATCY 2 cut(s) 11, 101
SaqAI TTAA 2 cut(s) 410, 444
Sau3AI GATC 3 cut(s) 11, 101, 427
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 112, 313, 402, 417, 477
SfaNI GCATC 1 cut(s) 244
SfuI TTCGAA 2 cut(s) 544, 559
Sse9I AATT 4 cut(s) 115, 197, 368, 449
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 112
TaqI TCGA 3 cut(s) 544, 559, 634
TasI AATT 4 cut(s) 115, 197, 368, 449
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 2 cut(s) 410, 444
Tru9I TTAA 2 cut(s) 410, 444
TspDTI ATGAA 2 cut(s) 297, 314
Van91I CCANNNNNTGG 1 cut(s) 508
VneI GTGCAC 1 cut(s) 150
XapI RAATTY 3 cut(s) 197, 368, 449
XceI RCATGY 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.