Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042351.1

Orthogroup ID

OG0008740

Physical Location & Seq

Genomic Coordinates Reverse (-)

1680 .. 2432

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042351.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgacagatatgatcgattcacattctaactttgacttgcattatatttgtagttcaagttgtcagcttatgcccgatattataactgttgcaccaaatatcggatctctacatgtgaattgtttttcacaaaatctgaatagagcaacttgtgcaccaagtatttctaagacgaaatgggtattgcattcaactgcaaaatttgaaaatgtgactttgactgatgacgacaggaagacattagaagcatgtcgtgatgctttgtccgcattgagtatcagtaatgaagagggagacaagatacttgggaaagcttttggtctgattcattcaccctactggggtgaagaaagaaaaaacaaagttccaaaatttgagattgtatgcgaaaagatggactaccttaggagtttaaacctgtctaacgatgatctgggtaagttgcttaaaaaatttccagaagttcttggatgtaaccttgaacatgagctgaaaaccaatgtccaagttttggaaaaggaatggggaataaaaggaaaatctcttcgaaatctcctccttcgaaatccaagggtgttgggttacaatgttgattgtaagggagattgtatggcacaatgcacccgttgctgggttcgattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

214

Amino Acids

24.26

Weight (kDa)

7.51

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09620 AT4G09620 AT4G09620
fragaria_vesca	FvH4_5g27630
malus_domestica	MD05G1041300.v1.1
prunus_persica	Prupe.8G057100_v2.0.a1 Prupe.8G057100_v2.0.a1 Prupe.8G057100_v2.0.a1 Prupe.8G057100_v2.0.a1 Prupe.8G057100_v2.0.a1 Prupe.8G057100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0219041
rosa_laevigata	RLG00000002307
rosa_multiflora	Rmu_sc0011122.1_g000002 Rmu_sc0042351.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240220
rosa_rugosa	Rorug07G0180900 Rorug07G0181000
rosa_samantha	Rh7AG324100 Rh7BG315600 Rh7CG341100 Rh7DG321100
rosa_wichuraiana	Rw7G027450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	511
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	3 cut(s)	200, 371, 452
AfiI	CCNNNNNNNGG	5 cut(s)	101, 341, 511, 630, 631
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	57, 192, 206, 482
AluBI	AGCT	3 cut(s)	67, 314, 490
AluI	AGCT	3 cut(s)	67, 314, 490
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	112
ApaLI	GTGCAC	1 cut(s)	153
ApoI	RAATTY	3 cut(s)	200, 371, 452
AsuHPI	GGTGA	2 cut(s)	324, 356
AsuII	TTCGAA	2 cut(s)	547, 562
AxyI	CCTNAGG	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	157
BccI	CCATC	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	242
Bpu14I	TTCGAA	2 cut(s)	547, 562
Bsa29I	ATCGAT	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 341, 511, 630, 631
Bse1I	ACTGG	1 cut(s)	344
Bse21I	CCTNAGG	1 cut(s)	404
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	1 cut(s)	476
BseLI	CCNNNNNNNGG	5 cut(s)	101, 341, 511, 630, 631
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	630
BshVI	ATCGAT	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	157
BslI	CCNNNNNNNGG	5 cut(s)	101, 341, 511, 630, 631
BsmAI	GTCTC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	187
Bsp119I	TTCGAA	2 cut(s)	547, 562
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	12, 104, 430
BspACI	CCGC	1 cut(s)	267
BspDI	ATCGAT	1 cut(s)	15
BspPI	GGATC	1 cut(s)	112
BspT104I	TTCGAA	2 cut(s)	547, 562
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	3 cut(s)	12, 104, 430
BssT1I	CCWWGG	1 cut(s)	569
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	2 cut(s)	282, 549
BstAPI	GCANNNNNTGC	2 cut(s)	152, 627
BstBI	TTCGAA	2 cut(s)	547, 562
BstDEI	CTNAG	2 cut(s)	168, 404
BstF5I	GGATG	1 cut(s)	476
BstKTI	GATC	3 cut(s)	15, 107, 433
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	3 cut(s)	12, 104, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 266, 627
BstNSI	RCATGY	2 cut(s)	116, 252
BstSLI	GKGCMC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	15
Bsu36I	CCTNAGG	1 cut(s)	404
BsuTUI	ATCGAT	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	476
ClaI	ATCGAT	1 cut(s)	15
CviAII	CATG	3 cut(s)	113, 249, 485
CviJI	RGCY	3 cut(s)	67, 314, 490
CviKI_1	RGCY	3 cut(s)	67, 314, 490
DdeI	CTNAG	2 cut(s)	168, 404
DpnI	GATC	3 cut(s)	14, 106, 432
DpnII	GATC	3 cut(s)	12, 104, 430
DraI	TTTAAA	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	282, 549
EarI	CTCTTC	2 cut(s)	282, 549
Eco130I	CCWWGG	1 cut(s)	569
Eco81I	CCTNAGG	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	3 cut(s)	116, 252, 488
FaiI	YATR	9 cut(s)	11, 45, 71, 83, 114, 250, 385, 486, 611
FatI	CATG	3 cut(s)	112, 248, 484
FokI	GGATG	1 cut(s)	483
GsaI	CCCAGC	1 cut(s)	634
Hin1II	CATG	3 cut(s)	116, 252, 488
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	2 cut(s)	17, 325
HphI	GGTGA	2 cut(s)	324, 356
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	3 cut(s)	104, 138, 324
Hpy188III	TCNNGA	2 cut(s)	254, 458
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	6 cut(s)	40, 92, 155, 187, 197, 621
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 266, 627
HpyF3I	CTNAG	2 cut(s)	168, 404
Hsp92II	CATG	3 cut(s)	116, 252, 488
Kzo9I	GATC	3 cut(s)	12, 104, 430
LpnPI	CCDG	6 cut(s)	217, 325, 419, 431, 471, 616
LweI	GCATC	1 cut(s)	247
MaeIII	GTNAC	3 cut(s)	211, 473, 581
MalI	GATC	3 cut(s)	14, 106, 432
MboI	GATC	3 cut(s)	12, 104, 430
MboII	GAAGA	4 cut(s)	247, 299, 359, 536
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	4 cut(s)	118, 200, 371, 452
MnlI	CCTC	2 cut(s)	283, 566
MseI	TTAA	2 cut(s)	413, 447
MssI	GTTTAAAC	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	187
MwoI	GCNNNNNNNGC	3 cut(s)	152, 266, 627
NdeII	GATC	3 cut(s)	12, 104, 430
NlaIII	CATG	3 cut(s)	116, 252, 488
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	2 cut(s)	116, 252
NspV	TTCGAA	2 cut(s)	547, 562
PciI	ACATGT	1 cut(s)	112
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	17, 325
PflMI	CCANNNNNTGG	1 cut(s)	511
PmeI	GTTTAAAC	1 cut(s)	414
PscI	ACATGT	1 cut(s)	112
PsiI	TTATAA	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	630
PsuI	RGATCY	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	413, 447
Sau3AI	GATC	3 cut(s)	12, 104, 430
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	6 cut(s)	69, 316, 405, 420, 480, 492
SfaNI	GCATC	1 cut(s)	247
SfuI	TTCGAA	2 cut(s)	547, 562
Sse9I	AATT	4 cut(s)	118, 200, 371, 452
SsiI	CCGC	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	4 cut(s)	15, 547, 562, 637
TasI	AATT	4 cut(s)	118, 200, 371, 452
TfiI	GAWTC	2 cut(s)	17, 325
Tru1I	TTAA	2 cut(s)	413, 447
Tru9I	TTAA	2 cut(s)	413, 447
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	300, 317
Van91I	CCANNNNNTGG	1 cut(s)	511
VneI	GTGCAC	1 cut(s)	153
XapI	RAATTY	3 cut(s)	200, 371, 452
XceI	RCATGY	2 cut(s)	116, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.