AT4G09830

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013109
Physical Location & Seq
Forward (+)
6188755 .. 6190853
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09830.1

Sequence Viewer

Length: 576 bp
ATGGGGAAGAAGAGAAAATCAACAGCCACAAGCCTCGATGAGGTAGATCGGACTGTTTACGCTTCTTTTCGCACCGCCGCTAACTCTTTATCTCAGCTTTATACTCAGTCTATGAATCATCAGAAGTTATCTTTTCAAGCCGGTGAACGCCATGGTTTGGAAAAACTGTACCAATGGATATGGAGACAACAAGAAGGAGGGTCAAGAGTGACACCTATGGATATTGTCAATTATATTCAGAACGAGCTCGAATGCTGCATAGACGAGCCTCCAATATCCCCAAGAGCGCCACCACCGCAACCAACAATGCATGTCACGAATCCCGGGCTCATGACCACTTCAGGCACCTCTTTCCCAACAGCTGTTCCAGTGGTTAGGTCCGAGCAGTGTGAGAACCAGGCCAAGAACTCGGTTTTCTCAAACGCACTTTCAAGCCCAATACGGCGTAGTCTTCAGAACTACCAAATTCCGCAGGGAGGCTACACATCCGGCGGAACCACCAGAAGCAGTGAAGTGAACAGGGGATCTAACTCTCCAGGTTCTATTGATTCTTCAATGGACATGCATGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

191

Amino Acids

21.07

Weight (kDa)

7.75

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09830
fragaria_vesca FvH4_2g13040
malus_domestica MD05G1033000.v1.1 MD10G1034000.v1.1
prunus_persica Prupe.8G040300_v2.0.a1
pyrus_communis pycom05g02400 pycom10g02250
rosa_chinensis RchiOBHm_Chr6g0274261
rosa_laevigata RLG00000013560
rosa_multiflora Rmu_sc0005132.1_g000023 Rmu_sc0007877.1_g000001
rosa_roxburghii Rroxscaffold_7G00194380
rosa_rugosa Rorug06G0080700.1
rosa_samantha Rh6AG195300 Rh6BG199900 Rh6CG199800 Rh6DG191300
rosa_wichuraiana Rw6G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 157
AciI CCGC 5 cut(s) 75, 78, 296, 470, 492
AclWI GGATC 1 cut(s) 532
AcsI RAATTY 1 cut(s) 465
AcuI CTGAAG 2 cut(s) 324, 437
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 40, 157, 476
AgsI TTSAA 3 cut(s) 137, 432, 555
AjnI CCWGG 2 cut(s) 396, 535
AluBI AGCT 3 cut(s) 97, 247, 362
AluI AGCT 3 cut(s) 97, 247, 362
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 532
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 1 cut(s) 255
ApoI RAATTY 1 cut(s) 465
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 378
AsuC2I CCSGG 2 cut(s) 324, 325
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 378
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 2 cut(s) 249, 330
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 458
BciT130I CCWGG 2 cut(s) 398, 537
BcnI CCSGG 2 cut(s) 324, 325
BcoDI GTCTC 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 290
BisI GCNGC 2 cut(s) 78, 256
BlsI GCNGC 2 cut(s) 79, 257
Bme1390I CCNGG 4 cut(s) 324, 325, 398, 537
Bme18I GGWCC 1 cut(s) 378
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 2 cut(s) 346, 496
BmrFI CCNGG 4 cut(s) 324, 325, 398, 537
BpiI GAAGAC 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 519
BpuMI CCSGG 2 cut(s) 324, 325
BsaJI CCNNGG 2 cut(s) 151, 323
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 157, 476
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 368
BseBI CCWGG 2 cut(s) 398, 537
BseDI CCNNGG 2 cut(s) 151, 323
BseGI GGATG 1 cut(s) 485
BseLI CCNNNNNNNGG 3 cut(s) 40, 157, 476
BseMII CTCAG 2 cut(s) 107, 119
BseNI ACTGG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 401
BshNI GGYRCC 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 3 cut(s) 141, 324, 489
BslI CCNNNNNNNGG 3 cut(s) 40, 157, 476
BsmAI GTCTC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 2 cut(s) 249, 330
Bsp143I GATC 2 cut(s) 46, 524
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 5 cut(s) 75, 78, 296, 470, 492
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 2 cut(s) 106, 118
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 346, 496
BspPI GGATC 1 cut(s) 532
BspT107I GGYRCC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 151, 323
BssMI GATC 2 cut(s) 46, 524
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 398, 537
Bst4CI ACNGT 2 cut(s) 55, 168
Bst6I CTCTTC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 2 cut(s) 93, 105
BstDSI CCRYGG 1 cut(s) 151
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 485
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 2 cut(s) 49, 527
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 46, 524
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 2 cut(s) 398, 537
BstNSI RCATGY 3 cut(s) 314, 565, 569
BstSCI CCNGG 4 cut(s) 322, 323, 396, 535
BstV1I GCAGC 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BsuRI GGCC 1 cut(s) 401
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 485
BtsI GCAGTG 2 cut(s) 392, 514
BtsIMutI CAGTG 3 cut(s) 375, 392, 514
Cac8I GCNNGC 1 cut(s) 567
CciI TCATGA 1 cut(s) 330
CfoI GCGC 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 378
Cfr9I CCCGGG 1 cut(s) 323
Csp6I GTAC 1 cut(s) 169
CviAII CATG 5 cut(s) 152, 311, 331, 562, 566
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 93, 105
DpnI GATC 2 cut(s) 48, 526
DpnII GATC 2 cut(s) 46, 524
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
EciI GGCGGA 1 cut(s) 507
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 2 cut(s) 249, 330
Eco47I GGWCC 1 cut(s) 378
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 2 cut(s) 324, 437
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 396, 535
EcoT14I CCWWGG 1 cut(s) 151
EcoT22I ATGCAT 2 cut(s) 312, 567
EcoT38I GRGCYC 2 cut(s) 249, 330
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 5 cut(s) 155, 314, 334, 565, 569
FatI CATG 5 cut(s) 151, 310, 330, 561, 565
Fnu4HI GCNGC 2 cut(s) 78, 256
FokI GGATG 1 cut(s) 472
FriOI GRGCYC 2 cut(s) 249, 330
Fsp4HI GCNGC 2 cut(s) 78, 256
GlaI GCGC 1 cut(s) 288
GluI GCNGC 2 cut(s) 78, 256
GsuI CTGGAG 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 1 cut(s) 401
HapII CCGG 3 cut(s) 141, 324, 489
HhaI GCGC 1 cut(s) 289
Hin1II CATG 5 cut(s) 155, 314, 334, 565, 569
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HinfI GANTC 3 cut(s) 115, 319, 548
HpaII CCGG 3 cut(s) 141, 324, 489
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 3 cut(s) 58, 146, 517
Hpy188I TCNGA 5 cut(s) 51, 123, 240, 382, 456
Hpy188III TCNNGA 3 cut(s) 204, 316, 331
Hpy8I GTNNAC 3 cut(s) 58, 146, 517
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 55, 168
HpyCH4V TGCA 4 cut(s) 258, 310, 565, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 2 cut(s) 93, 105
Hsp92II CATG 5 cut(s) 155, 314, 334, 565, 569
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 2 cut(s) 46, 524
Lsp1109I GCAGC 1 cut(s) 242
MaeIII GTNAC 2 cut(s) 208, 313
MalI GATC 2 cut(s) 48, 526
MboI GATC 2 cut(s) 46, 524
MboII GAAGA 4 cut(s) 19, 22, 443, 543
MflI RGATCY 1 cut(s) 524
MhlI GDGCHC 2 cut(s) 249, 330
MluCI AATT 2 cut(s) 229, 465
MnlI CCTC 6 cut(s) 34, 44, 191, 279, 358, 470
Mph1103I ATGCAT 2 cut(s) 312, 567
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 3 cut(s) 141, 324, 489
MspR9I CCNGG 4 cut(s) 324, 325, 398, 537
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 2 cut(s) 398, 537
MwoI GCNNNNNNNGC 1 cut(s) 295
NciI CCSGG 2 cut(s) 324, 325
NcoI CCATGG 1 cut(s) 151
NdeII GATC 2 cut(s) 46, 524
NlaIII CATG 5 cut(s) 155, 314, 334, 565, 569
NlaIV GGNNCC 2 cut(s) 346, 496
NmuCI GTSAC 2 cut(s) 208, 313
NsiI ATGCAT 2 cut(s) 312, 567
NspI RCATGY 3 cut(s) 314, 565, 569
PaeI GCATGC 1 cut(s) 569
PagI TCATGA 1 cut(s) 330
PctI GAATGC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 115, 319, 548
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 2 cut(s) 79, 257
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 396, 535
PspGI CCWGG 2 cut(s) 396, 535
PspN4I GGNNCC 2 cut(s) 346, 496
PspPI GGNCC 1 cut(s) 378
PsuI RGATCY 1 cut(s) 524
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SacI GAGCTC 1 cut(s) 249
SatI GCNGC 2 cut(s) 78, 256
Sau3AI GATC 2 cut(s) 46, 524
Sau96I GGNCC 1 cut(s) 378
ScrFI CCNGG 4 cut(s) 324, 325, 398, 537
SduI GDGCHC 2 cut(s) 249, 330
SetI ASST 8 cut(s) 45, 99, 217, 249, 350, 364, 380, 541
SinI GGWCC 1 cut(s) 378
SmaI CCCGGG 1 cut(s) 325
SphI GCATGC 1 cut(s) 569
Sse9I AATT 2 cut(s) 229, 465
SsiI CCGC 5 cut(s) 75, 78, 296, 470, 492
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 4 cut(s) 322, 323, 396, 535
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 55, 168
TaqI TCGA 2 cut(s) 36, 249
TasI AATT 2 cut(s) 229, 465
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 3 cut(s) 115, 319, 548
TscAI CASTG 3 cut(s) 375, 392, 514
TseFI GTSAC 2 cut(s) 208, 313
TseI GCWGC 1 cut(s) 255
Tsp45I GTSAC 2 cut(s) 208, 313
TspDTI ATGAA 1 cut(s) 128
TspMI CCCGGG 1 cut(s) 323
TspRI CASTG 3 cut(s) 375, 392, 514
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 378
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 1 cut(s) 465
XceI RCATGY 3 cut(s) 314, 565, 569
XmaI CCCGGG 1 cut(s) 323
Zsp2I ATGCAT 2 cut(s) 312, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.