FvH4_2g13040

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013109
Physical Location & Seq
Forward (+)
11445570 .. 11449717
4148 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13040.t1

Sequence Viewer

Length: 777 bp
ATGTGTCTTTCCTCGTCTGAAAAACCTTTATATGTGTGTTCCCTGATAAACGTAGAGAAATCAAAAGCCCAAAACACAGAGCATATATCACACCCAATTTCTCAAAATCAAGGGTTTCTTCTTCAATCGAACCCAATCGATCATCACCTTAAACCTTTAAGGGCGATGGGGAAGAAGAGAAAGTCGGTGGCCACCAGCCTCGACGAGGTGGATCGAAGCATGTACACCTCCTTCTGCAGCGCTGCCAATTCCCTCTCTCAGCTTTACACACAAGCCATGAACCACCAGAAGCTTTCCTTCCAAGCCGGTGAACGCCATGCCCTTGATAAAATATATCAGTGGATATGTAGACAACAAGAAGGAGGATCTAGAGTTGCAACAGGCGATATACTCAACTACCTCCAGAATGAGTTGGATTATTGTGGAGAGGAGCCATCAATGTCCCCTAGAGTGACAGTGCAACATCAGCATACACCGTCCTCGCATTTCACAAACTCGGGGTTCCCAATATCTTCTGGCTCATCTGCCCCAAATACTGGACAAGGGATTCGTTCTGAACAGTGTGATCATCAGTCCAAGAATTCTGTCTTCTCAAATGCTTTGTCGAGTCCGGTTCGCCAGAGTCTTCAGCACTATCACATTTCCTACCCTGGCGCTGGTCTGCCATCTGCCCGAAACAATGAACCCAACTTTCTTCAACCAAACAGGGATGTTAATGCTCTGAGTTCCAACGACTCTTCGATGGACATGCATGCAGATAGTCCTGGTCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

259

Amino Acids

28.56

Weight (kDa)

6.91

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAPR1-like PF15251 70 - 250 2.1e-06 Telomere attrition and p53 response 1 protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09830
fragaria_vesca FvH4_2g13040
malus_domestica MD05G1033000.v1.1 MD10G1034000.v1.1
prunus_persica Prupe.8G040300_v2.0.a1
pyrus_communis pycom05g02400 pycom10g02250
rosa_chinensis RchiOBHm_Chr6g0274261
rosa_laevigata RLG00000013560
rosa_multiflora Rmu_sc0005132.1_g000023 Rmu_sc0007877.1_g000001
rosa_roxburghii Rroxscaffold_7G00194380
rosa_rugosa Rorug06G0080700.1
rosa_samantha Rh6AG195300 Rh6BG199900 Rh6CG199800 Rh6DG191300
rosa_wichuraiana Rw6G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 536
AccI GTMKAC 1 cut(s) 349
AclWI GGATC 2 cut(s) 219, 373
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 580
AcuI CTGAAG 1 cut(s) 611
AfaI GTAC 1 cut(s) 224
AfeI AGCGCT 1 cut(s) 241
AfiI CCNNNNNNNGG 3 cut(s) 205, 536, 656
AgsI TTSAA 2 cut(s) 125, 698
AjnI CCWGG 2 cut(s) 649, 763
AluBI AGCT 2 cut(s) 262, 292
AluI AGCT 2 cut(s) 262, 292
AlwI GGATC 2 cut(s) 219, 373
Ama87I CYCGRG 1 cut(s) 496
Aor51HI AGCGCT 1 cut(s) 241
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 237, 242
ApoI RAATTY 1 cut(s) 580
ArsI GACNNNNNNTTYG 4 cut(s) 531, 563, 587, 619
AspLEI GCGC 2 cut(s) 242, 656
AsuHPI GGTGA 2 cut(s) 137, 320
AvaI CYCGRG 1 cut(s) 496
BalI TGGCCA 1 cut(s) 191
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbsI GAAGAC 2 cut(s) 580, 617
BbvI GCAGC 2 cut(s) 229, 249
BccI CCATC 4 cut(s) 160, 442, 673, 736
BcgI CGANNNNNNTGC 2 cut(s) 730, 764
BciT130I CCWGG 2 cut(s) 651, 765
BclI TGATCA 1 cut(s) 565
BfaI CTAG 2 cut(s) 369, 447
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 2 cut(s) 243, 657
BisI GCNGC 2 cut(s) 238, 243
BlsI GCNGC 2 cut(s) 239, 244
Bme1390I CCNGG 2 cut(s) 651, 765
BmeT110I CYCGRG 1 cut(s) 496
BmiI GGNNCC 2 cut(s) 432, 503
BmrFI CCNGG 2 cut(s) 651, 765
BpiI GAAGAC 2 cut(s) 580, 617
BpmI CTGGAG 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 649
BsaWI WCCGGW 1 cut(s) 610
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 536, 656
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 541
BseBI CCWGG 2 cut(s) 651, 765
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 1 cut(s) 715
BseLI CCNNNNNNNGG 3 cut(s) 205, 536, 656
BseMII CTCAG 2 cut(s) 272, 713
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 2 cut(s) 229, 249
BshFI GGCC 1 cut(s) 191
BshVI ATCGAT 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 496
BsiSI CCGG 2 cut(s) 306, 611
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 3 cut(s) 205, 536, 656
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 496
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 4 cut(s) 139, 211, 365, 565
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 2 cut(s) 271, 714
BspDI ATCGAT 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 432, 503
BspMAI CTGCAG 1 cut(s) 239
BspPI GGATC 2 cut(s) 219, 373
BsrFI RCCGGY 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 541
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 4 cut(s) 139, 211, 365, 565
Bst2UI CCWGG 2 cut(s) 651, 765
Bst4CI ACNGT 3 cut(s) 457, 477, 561
Bst6I CTCTTC 2 cut(s) 170, 742
BstAUI TGTACA 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 2 cut(s) 258, 722
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 715
BstH2I RGCGCY 2 cut(s) 243, 657
BstHHI GCGC 2 cut(s) 242, 656
BstKTI GATC 4 cut(s) 142, 214, 368, 568
BstMBI GATC 4 cut(s) 139, 211, 365, 565
BstMWI GCNNNNNNNGC 1 cut(s) 466
BstNI CCWGG 2 cut(s) 651, 765
BstNSI RCATGY 3 cut(s) 223, 751, 755
BstSCI CCNGG 2 cut(s) 649, 763
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 229, 249
BstV2I GAAGAC 2 cut(s) 580, 617
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 1 cut(s) 191
BsuTUI ATCGAT 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 715
BtsIMutI CAGTG 3 cut(s) 344, 462, 566
Cac8I GCNNGC 1 cut(s) 753
CfoI GCGC 2 cut(s) 242, 656
Cfr10I RCCGGY 1 cut(s) 305
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 1 cut(s) 223
CviAII CATG 5 cut(s) 220, 277, 317, 748, 752
CviJI RGCY 9 cut(s) 68, 191, 198, 262, 275, 292, 305, 433, 519
CviKI_1 RGCY 9 cut(s) 68, 191, 198, 262, 275, 292, 305, 433, 519
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 258, 722
DpnI GATC 4 cut(s) 141, 213, 367, 567
DpnII GATC 4 cut(s) 139, 211, 365, 565
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 170, 742
EarI CTCTTC 2 cut(s) 170, 742
Eco47III AGCGCT 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 611
Eco88I CYCGRG 1 cut(s) 496
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 580
EcoRII CCWGG 2 cut(s) 649, 763
EcoT22I ATGCAT 1 cut(s) 753
FaeI CATG 5 cut(s) 223, 280, 320, 751, 755
FalI AAGNNNNNCTT 4 cut(s) 102, 134, 281, 313
FaqI GGGAC 1 cut(s) 427
FatI CATG 5 cut(s) 219, 276, 316, 747, 751
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 2 cut(s) 238, 243
FokI GGATG 1 cut(s) 722
Fsp4HI GCNGC 2 cut(s) 238, 243
FspBI CTAG 2 cut(s) 369, 447
GlaI GCGC 2 cut(s) 241, 655
GluI GCNGC 2 cut(s) 238, 243
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 2 cut(s) 243, 657
HaeIII GGCC 1 cut(s) 191
HapII CCGG 2 cut(s) 306, 611
HhaI GCGC 2 cut(s) 242, 656
Hin1II CATG 5 cut(s) 223, 280, 320, 751, 755
Hin6I GCGC 2 cut(s) 240, 654
HinP1I GCGC 2 cut(s) 240, 654
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 4 cut(s) 547, 607, 622, 734
HpaII CCGG 2 cut(s) 306, 611
HphI GGTGA 2 cut(s) 137, 320
Hpy166II GTNNAC 3 cut(s) 225, 311, 350
Hpy188I TCNGA 3 cut(s) 19, 556, 723
Hpy188III TCNNGA 2 cut(s) 369, 403
Hpy8I GTNNAC 3 cut(s) 225, 311, 350
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 3 cut(s) 241, 307, 353
HpyCH4III ACNGT 3 cut(s) 457, 477, 561
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 5 cut(s) 237, 377, 460, 751, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 466
HpyF3I CTNAG 2 cut(s) 258, 722
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 5 cut(s) 223, 280, 320, 751, 755
HspAI GCGC 2 cut(s) 240, 654
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 4 cut(s) 139, 211, 365, 565
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 2 cut(s) 229, 249
MaeI CTAG 2 cut(s) 369, 447
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 451, 767
MalI GATC 4 cut(s) 141, 213, 367, 567
MboI GATC 4 cut(s) 139, 211, 365, 565
MboII GAAGA 9 cut(s) 110, 113, 184, 187, 504, 580, 617, 686, 729
MflI RGATCY 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 3 cut(s) 96, 247, 580
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 3 cut(s) 616, 631, 728
MmeI TCCRAC 2 cut(s) 393, 753
MnlI CCTC 9 cut(s) 22, 199, 209, 238, 263, 356, 410, 421, 490
Mox20I TGGCCA 1 cut(s) 191
Mph1103I ATGCAT 1 cut(s) 753
MscI TGGCCA 1 cut(s) 191
MseI TTAA 3 cut(s) 150, 158, 714
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 2 cut(s) 306, 611
MspR9I CCNGG 2 cut(s) 651, 765
MvaI CCWGG 2 cut(s) 651, 765
MwoI GCNNNNNNNGC 1 cut(s) 466
NdeII GATC 4 cut(s) 139, 211, 365, 565
NlaIII CATG 5 cut(s) 223, 280, 320, 751, 755
NlaIV GGNNCC 2 cut(s) 432, 503
NmuCI GTSAC 2 cut(s) 451, 767
NsiI ATGCAT 1 cut(s) 753
NspI RCATGY 3 cut(s) 223, 751, 755
PaeI GCATGC 1 cut(s) 755
PfeI GAWTC 1 cut(s) 547
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 2 cut(s) 239, 244
PleI GAGTC 3 cut(s) 615, 630, 728
PpsI GAGTC 3 cut(s) 615, 630, 728
Psp6I CCWGG 2 cut(s) 649, 763
PspGI CCWGG 2 cut(s) 649, 763
PspN4I GGNNCC 2 cut(s) 432, 503
PstI CTGCAG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 3 cut(s) 150, 158, 714
SatI GCNGC 2 cut(s) 238, 243
Sau3AI GATC 4 cut(s) 139, 211, 365, 565
SchI GAGTC 3 cut(s) 616, 631, 728
ScrFI CCNGG 2 cut(s) 651, 765
SetI ASST 9 cut(s) 28, 54, 150, 157, 210, 230, 264, 294, 402
SfcI CTRYAG 1 cut(s) 235
SphI GCATGC 1 cut(s) 755
Sse9I AATT 3 cut(s) 96, 247, 580
SspMI CTAG 2 cut(s) 369, 447
StyD4I CCNGG 2 cut(s) 649, 763
TaaI ACNGT 3 cut(s) 457, 477, 561
TaiI ACGT 1 cut(s) 54
TaqI TCGA 6 cut(s) 128, 138, 201, 214, 605, 740
TasI AATT 3 cut(s) 96, 247, 580
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 3 cut(s) 150, 158, 714
Tru9I TTAA 3 cut(s) 150, 158, 714
TscAI CASTG 3 cut(s) 344, 462, 566
TseFI GTSAC 2 cut(s) 451, 767
TseI GCWGC 2 cut(s) 237, 242
Tsp45I GTSAC 2 cut(s) 451, 767
TspDTI ATGAA 2 cut(s) 293, 696
TspRI CASTG 3 cut(s) 344, 462, 566
Van91I CCANNNNNTGG 1 cut(s) 536
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 1 cut(s) 580
XbaI TCTAGA 1 cut(s) 368
XceI RCATGY 3 cut(s) 223, 751, 755
XmiI GTMKAC 1 cut(s) 349
XspI CTAG 2 cut(s) 369, 447
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.