MD10G1034000.v1.1

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013109
Physical Location & Seq
Reverse (-)
4385774 .. 4389546
3773 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1034000.v1.1.491

Sequence Viewer

Length: 639 bp
ATGGGGAAGAAGAGGAAGTCGATAGCCTCCAGCCTCGACGAGGTGGATCGAAGCATGTATACCTCTTTCTGCAGCGCCGCTAATTCCCTCTCTCAGCTCTACACTCAGGCCATGAACCACCAAAAACTCTCCTTTCAGGCCGGTGAACGCCACGCCCTTGATAAAATTTATCAGTGGATCTGCAGACAGCAAGAAGGAGGCTCACGAGTTACAACAGTCGAGATAGTCGATTATCTTCAGAATGAGTTGGACAGTTGTGGAGAGGAGCCATCAATGTCCCCTAGATTGCCACTCCAACATCAGCCCACTGTGCATTTCTCAAGCTCAGGTTTCCCAGTTACTTCTGGGTCATCTGGTCCAACAAATACTGTGCAGGGAATTCGTTCTGAGCCGTGCGATCATCAATCTAAGAATTCAGTCTTCTCAAATGCTCTGTCAAGCCCTGTTCGCCAAAGTCTTCAGCATTATCACATTTCTCAAGATGGACATTACCCAGGCTCAGGTCTGCCATCTGGAAATGGAGCCCGAAACAATGAACCTAGCTTTCTCCACCCAAACCGGGATGCTAATCCTCCGAGTTCCAATGATACCTCGATGGACATGCATGCAGATAGTCCTGGTCATGATTCTACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

213

Amino Acids

23.23

Weight (kDa)

6.09

Isoelectric Point (pI)

67.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAPR1-like PF15251 15 - 201 3.9e-07 Telomere attrition and p53 response 1 protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09830
fragaria_vesca FvH4_2g13040
malus_domestica MD05G1033000.v1.1 MD10G1034000.v1.1
prunus_persica Prupe.8G040300_v2.0.a1
pyrus_communis pycom05g02400 pycom10g02250
rosa_chinensis RchiOBHm_Chr6g0274261
rosa_laevigata RLG00000013560
rosa_multiflora Rmu_sc0005132.1_g000023 Rmu_sc0007877.1_g000001
rosa_roxburghii Rroxscaffold_7G00194380
rosa_rugosa Rorug06G0080700.1
rosa_samantha Rh6AG195300 Rh6BG199900 Rh6CG199800 Rh6DG191300
rosa_wichuraiana Rw6G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 59
AciI CCGC 1 cut(s) 78
AclWI GGATC 2 cut(s) 54, 185
AcsI RAATTY 3 cut(s) 165, 378, 412
AcuI CTGAAG 2 cut(s) 221, 443
AfiI CCNNNNNNNGG 3 cut(s) 40, 500, 559
AjnI CCWGG 2 cut(s) 493, 616
AluBI AGCT 3 cut(s) 97, 324, 543
AluI AGCT 3 cut(s) 97, 324, 543
AlwI GGATC 2 cut(s) 54, 185
AoxI GGCC 2 cut(s) 108, 138
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 3 cut(s) 165, 378, 412
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
Asp700I GAANNNNTTC 1 cut(s) 382
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 356
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 526
BarI GAAGNNNNNNTAC 2 cut(s) 43, 75
BauI CACGAG 1 cut(s) 204
BbsI GAAGAC 2 cut(s) 412, 449
BbvI GCAGC 1 cut(s) 84
BccI CCATC 4 cut(s) 277, 476, 517, 589
BceAI ACGGC 1 cut(s) 376
BcgI CGANNNNNNTGC 4 cut(s) 362, 396, 583, 617
BciT130I CCWGG 2 cut(s) 495, 618
BcnI CCSGG 1 cut(s) 560
BfaI CTAG 2 cut(s) 282, 540
BfmI CTRYAG 2 cut(s) 70, 181
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 2 cut(s) 73, 78
BlsI GCNGC 2 cut(s) 74, 79
Bme1390I CCNGG 3 cut(s) 495, 560, 618
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 2 cut(s) 267, 523
BmrFI CCNGG 3 cut(s) 495, 560, 618
BmrI ACTGGG 1 cut(s) 329
BmsI GCATC 1 cut(s) 553
BmuI ACTGGG 1 cut(s) 329
BpiI GAAGAC 2 cut(s) 412, 449
BpmI CTGGAG 1 cut(s) 13
Bpu10I CCTNAGC 2 cut(s) 325, 499
BpuEI CTTGAG 2 cut(s) 304, 462
BpuMI CCSGG 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 493
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 500, 559
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 335
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 2 cut(s) 495, 618
BseDI CCNNGG 1 cut(s) 493
BseGI GGATG 1 cut(s) 568
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 3 cut(s) 40, 500, 559
BseMII CTCAG 5 cut(s) 107, 119, 339, 378, 513
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 392
BshFI GGCC 2 cut(s) 110, 140
BsiSI CCGG 2 cut(s) 141, 559
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 3 cut(s) 40, 500, 559
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 2 cut(s) 110, 140
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 3 cut(s) 46, 177, 397
BspACI CCGC 1 cut(s) 78
BspANI GGCC 2 cut(s) 110, 140
BspCNI CTCAG 5 cut(s) 106, 118, 338, 379, 512
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 2 cut(s) 267, 523
BspMAI CTGCAG 2 cut(s) 74, 185
BspPI GGATC 2 cut(s) 54, 185
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 493
BssMI GATC 3 cut(s) 46, 177, 397
BssNAI GTATAC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 204
Bst1107I GTATAC 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 495, 618
Bst4CI ACNGT 4 cut(s) 217, 254, 310, 370
Bst6I CTCTTC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 6 cut(s) 93, 105, 325, 387, 408, 499
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 568
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 3 cut(s) 49, 180, 400
BstMBI GATC 3 cut(s) 46, 177, 397
BstMWI GCNNNNNNNGC 2 cut(s) 310, 447
BstNI CCWGG 2 cut(s) 495, 618
BstNSI RCATGY 3 cut(s) 58, 604, 608
BstSCI CCNGG 3 cut(s) 493, 558, 616
BstSFI CTRYAG 2 cut(s) 70, 181
BstV1I GCAGC 1 cut(s) 84
BstV2I GAAGAC 2 cut(s) 412, 449
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BstZ17I GTATAC 1 cut(s) 60
BsuRI GGCC 2 cut(s) 110, 140
BtsCI GGATG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 179, 306
Cac8I GCNNGC 1 cut(s) 606
CciI TCATGA 1 cut(s) 622
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 356
CviAII CATG 5 cut(s) 55, 112, 601, 605, 623
DdeI CTNAG 6 cut(s) 93, 105, 325, 387, 408, 499
DpnI GATC 3 cut(s) 48, 179, 399
DpnII GATC 3 cut(s) 46, 177, 397
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 356
Eco57I CTGAAG 2 cut(s) 221, 443
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoRI GAATTC 2 cut(s) 378, 412
EcoRII CCWGG 2 cut(s) 493, 616
EcoT22I ATGCAT 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 526
FaeI CATG 5 cut(s) 58, 115, 604, 608, 626
FaiI YATR 6 cut(s) 56, 60, 113, 602, 606, 624
FaqI GGGAC 1 cut(s) 262
FatI CATG 5 cut(s) 54, 111, 600, 604, 622
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 73, 78
FokI GGATG 1 cut(s) 575
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 2 cut(s) 73, 78
FspBI CTAG 2 cut(s) 282, 540
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 73, 78
GsuI CTGGAG 1 cut(s) 13
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 2 cut(s) 110, 140
HapII CCGG 2 cut(s) 141, 559
HhaI GCGC 1 cut(s) 77
Hin1II CATG 5 cut(s) 58, 115, 604, 608, 626
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 1 cut(s) 626
HpaII CCGG 2 cut(s) 141, 559
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 60, 146
Hpy188I TCNGA 3 cut(s) 240, 388, 576
Hpy188III TCNNGA 5 cut(s) 204, 220, 479, 513, 623
Hpy8I GTNNAC 2 cut(s) 60, 146
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 4 cut(s) 217, 254, 310, 370
HpyCH4V TGCA 6 cut(s) 72, 183, 313, 373, 604, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 447
HpyF3I CTNAG 6 cut(s) 93, 105, 325, 387, 408, 499
Hsp92II CATG 5 cut(s) 58, 115, 604, 608, 626
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 3 cut(s) 46, 177, 397
LmnI GCTCC 2 cut(s) 265, 521
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 1 cut(s) 553
MaeI CTAG 2 cut(s) 282, 540
MaeIII GTNAC 2 cut(s) 208, 337
MalI GATC 3 cut(s) 48, 179, 399
MboI GATC 3 cut(s) 46, 177, 397
MboII GAAGA 5 cut(s) 19, 22, 227, 412, 449
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 4 cut(s) 82, 165, 378, 412
MmeI TCCRAC 3 cut(s) 228, 319, 383
Mph1103I ATGCAT 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 382
MspI CCGG 2 cut(s) 141, 559
MspR9I CCNGG 3 cut(s) 495, 560, 618
MvaI CCWGG 2 cut(s) 495, 618
MwoI GCNNNNNNNGC 2 cut(s) 310, 447
NciI CCSGG 1 cut(s) 560
NdeII GATC 3 cut(s) 46, 177, 397
NlaIII CATG 5 cut(s) 58, 115, 604, 608, 626
NlaIV GGNNCC 2 cut(s) 267, 523
NsiI ATGCAT 1 cut(s) 606
NspI RCATGY 3 cut(s) 58, 604, 608
PaeI GCATGC 1 cut(s) 608
PagI TCATGA 1 cut(s) 622
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 626
PkrI GCNGC 2 cut(s) 74, 79
Psp6I CCWGG 2 cut(s) 493, 616
PspGI CCWGG 2 cut(s) 493, 616
PspN4I GGNNCC 2 cut(s) 267, 523
PspPI GGNCC 1 cut(s) 356
PstI CTGCAG 2 cut(s) 74, 185
PsuI RGATCY 1 cut(s) 177
SatI GCNGC 2 cut(s) 73, 78
Sau3AI GATC 3 cut(s) 46, 177, 397
Sau96I GGNCC 1 cut(s) 356
ScrFI CCNGG 3 cut(s) 495, 560, 618
SduI GDGCHC 1 cut(s) 526
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 2 cut(s) 70, 181
SinI GGWCC 1 cut(s) 356
SmlI CTYRAG 2 cut(s) 319, 477
SmoI CTYRAG 2 cut(s) 319, 477
SphI GCATGC 1 cut(s) 608
Sse9I AATT 4 cut(s) 82, 165, 378, 412
SsiI CCGC 1 cut(s) 78
SspMI CTAG 2 cut(s) 282, 540
StyD4I CCNGG 3 cut(s) 493, 558, 616
TaaI ACNGT 4 cut(s) 217, 254, 310, 370
TaqI TCGA 6 cut(s) 20, 36, 49, 219, 228, 593
TasI AATT 4 cut(s) 82, 165, 378, 412
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 626
TscAI CASTG 2 cut(s) 179, 313
TseI GCWGC 1 cut(s) 72
TspDTI ATGAA 2 cut(s) 128, 549
TspRI CASTG 2 cut(s) 179, 313
VpaK11BI GGWCC 1 cut(s) 356
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 3 cut(s) 165, 378, 412
XceI RCATGY 3 cut(s) 58, 604, 608
XmiI GTMKAC 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 382
XspI CTAG 2 cut(s) 282, 540
Zsp2I ATGCAT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.