Rmu_sc0007877.1_g000001

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007877.1
OG0013109
Physical Location & Seq
Forward (+)
1 .. 4278
4278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007877.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
gataaaatttatcagtggatctgtagacaacaagaagggggatctagagttgcaacaggcgatatactcaactaccttcagaatgagttggactattgtggagaagagccgtcaatgtctcctagagtggcagtgcaacatcagcatacaccgtcctctctgcatttcacaaattccggttttccaatatcttctggctcgtctgccccaagtactgggcagggaattcgttctgagcagtgtgatcagcagtccaagaattctgtcttctcaaatgctctgtcgagccctgttcgccagagtcttcagcactatcacatttcttacccgggccctggtctgccatctggaaatggtgcccgaaacaatgaacctaactttcttcaaccaaacagggatgttaatcctccaagctccaacgactcttcgatggacatgcatgcagatagtcctggtcactactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

154

Amino Acids

16.8

Weight (kDa)

5.72

Isoelectric Point (pI)

82.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09830
fragaria_vesca FvH4_2g13040
malus_domestica MD05G1033000.v1.1 MD10G1034000.v1.1
prunus_persica Prupe.8G040300_v2.0.a1
pyrus_communis pycom05g02400 pycom10g02250
rosa_chinensis RchiOBHm_Chr6g0274261
rosa_laevigata RLG00000013560
rosa_multiflora Rmu_sc0005132.1_g000023 Rmu_sc0007877.1_g000001
rosa_roxburghii Rroxscaffold_7G00194380
rosa_rugosa Rorug06G0080700.1
rosa_samantha Rh6AG195300 Rh6BG199900 Rh6CG199800 Rh6DG191300
rosa_wichuraiana Rw6G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 215
AccI GTMKAC 1 cut(s) 25
AclWI GGATC 2 cut(s) 26, 49
AcsI RAATTY 4 cut(s) 6, 172, 225, 259
AcuI CTGAAG 2 cut(s) 62, 290
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 215, 335
AgsI TTSAA 1 cut(s) 386
AjnI CCWGG 2 cut(s) 334, 451
AluBI AGCT 1 cut(s) 414
AluI AGCT 1 cut(s) 414
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 2 cut(s) 26, 49
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 1 cut(s) 331
ApaI GGGCCC 1 cut(s) 335
ApoI RAATTY 4 cut(s) 6, 172, 225, 259
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
Asp700I GAANNNNTTC 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 331, 332
AsuC2I CCSGG 2 cut(s) 329, 330
AvaI CYCGRG 1 cut(s) 328
BaeGI GKGCMC 2 cut(s) 335, 361
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 2 cut(s) 290, 335
BbsI GAAGAC 2 cut(s) 259, 296
BccI CCATC 2 cut(s) 352, 424
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 4 cut(s) 209, 243, 418, 452
BciT130I CCWGG 2 cut(s) 336, 453
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 2 cut(s) 329, 330
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 2 cut(s) 45, 123
BfmI CTRYAG 1 cut(s) 22
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 4 cut(s) 329, 330, 336, 453
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 331, 332
BmiI GGNNCC 2 cut(s) 333, 358
BmrFI CCNGG 4 cut(s) 329, 330, 336, 453
BmrI ACTGGG 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 225
BpiI GAAGAC 2 cut(s) 259, 296
BpuMI CCSGG 2 cut(s) 329, 330
BsaBI GATNNNNATC 1 cut(s) 402
BsaJI CCNNGG 2 cut(s) 328, 334
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 335
Bse1I ACTGG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 2 cut(s) 336, 453
BseDI CCNNGG 2 cut(s) 328, 334
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 2 cut(s) 215, 335
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 220
BseSI GKGCMC 2 cut(s) 335, 361
BshFI GGCC 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 2 cut(s) 177, 329
BslI CCNNNNNNNGG 2 cut(s) 215, 335
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 328
Bsp120I GGGCCC 1 cut(s) 331
Bsp1286I GDGCHC 3 cut(s) 290, 335, 361
Bsp143I GATC 3 cut(s) 18, 41, 244
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 333, 358
BspPI GGATC 2 cut(s) 26, 49
BspQI GCTCTTC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 356
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 328, 334
BssMI GATC 3 cut(s) 18, 41, 244
Bst2UI CCWGG 2 cut(s) 336, 453
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 2 cut(s) 99, 430
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 3 cut(s) 21, 44, 247
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 3 cut(s) 18, 41, 244
BstMWI GCNNNNNNNGC 2 cut(s) 142, 294
BstNI CCWGG 2 cut(s) 336, 453
BstNSI RCATGY 2 cut(s) 439, 443
BstSCI CCNGG 4 cut(s) 327, 328, 334, 451
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 2 cut(s) 335, 361
BstV2I GAAGAC 2 cut(s) 259, 296
BstX2I RGATCY 2 cut(s) 18, 41
BstYI RGATCY 2 cut(s) 18, 41
BsuRI GGCC 1 cut(s) 333
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 2 cut(s) 138, 245
BtsIMutI CAGTG 3 cut(s) 20, 138, 245
Cac8I GCNNGC 1 cut(s) 441
Cfr13I GGNCC 2 cut(s) 331, 332
Cfr9I CCCGGG 1 cut(s) 328
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 436, 440
CviJI RGCY 5 cut(s) 109, 198, 288, 333, 414
CviKI_1 RGCY 5 cut(s) 109, 198, 288, 333, 414
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 234
DpnI GATC 3 cut(s) 20, 43, 246
DpnII GATC 3 cut(s) 18, 41, 244
Eam1104I CTCTTC 2 cut(s) 99, 430
EarI CTCTTC 2 cut(s) 99, 430
Eco24I GRGCYC 2 cut(s) 290, 335
Eco57I CTGAAG 2 cut(s) 62, 290
Eco88I CYCGRG 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 332
EcoRI GAATTC 2 cut(s) 225, 259
EcoRII CCWGG 2 cut(s) 334, 451
EcoT22I ATGCAT 1 cut(s) 441
EcoT38I GRGCYC 2 cut(s) 290, 335
FaeI CATG 2 cut(s) 439, 443
FaiI YATR 4 cut(s) 65, 147, 437, 441
FatI CATG 2 cut(s) 435, 439
FbaI TGATCA 1 cut(s) 244
FblI GTMKAC 1 cut(s) 25
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 2 cut(s) 290, 335
FspBI CTAG 2 cut(s) 45, 123
HaeIII GGCC 1 cut(s) 333
HapII CCGG 2 cut(s) 177, 329
Hin1II CATG 2 cut(s) 439, 443
HinfI GANTC 2 cut(s) 301, 422
HpaII CCGG 2 cut(s) 177, 329
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 2 cut(s) 81, 235
Hpy188III TCNNGA 2 cut(s) 45, 348
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 29, 86
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4V TGCA 5 cut(s) 53, 136, 163, 439, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 294
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 2 cut(s) 439, 443
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 18, 41, 244
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 419
MaeI CTAG 2 cut(s) 45, 123
MaeIII GTNAC 1 cut(s) 455
MalI GATC 3 cut(s) 20, 43, 246
MboI GATC 3 cut(s) 18, 41, 244
MboII GAAGA 6 cut(s) 116, 183, 259, 296, 374, 417
MflI RGATCY 2 cut(s) 18, 41
MhlI GDGCHC 3 cut(s) 290, 335, 361
MluCI AATT 4 cut(s) 6, 172, 225, 259
MlyI GAGTC 2 cut(s) 310, 416
MmeI TCCRAC 2 cut(s) 69, 441
MnlI CCTC 2 cut(s) 166, 417
Mph1103I ATGCAT 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 229
MseI TTAA 1 cut(s) 402
MspI CCGG 2 cut(s) 177, 329
MspR9I CCNGG 4 cut(s) 329, 330, 336, 453
MvaI CCWGG 2 cut(s) 336, 453
MwoI GCNNNNNNNGC 2 cut(s) 142, 294
NciI CCSGG 2 cut(s) 329, 330
NdeII GATC 3 cut(s) 18, 41, 244
NlaIII CATG 2 cut(s) 439, 443
NlaIV GGNNCC 2 cut(s) 333, 358
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 2 cut(s) 439, 443
PaeI GCATGC 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 215
PleI GAGTC 2 cut(s) 309, 416
PpsI GAGTC 2 cut(s) 309, 416
Psp6I CCWGG 2 cut(s) 334, 451
PspGI CCWGG 2 cut(s) 334, 451
PspN4I GGNNCC 2 cut(s) 333, 358
PspOMI GGGCCC 1 cut(s) 331
PspPI GGNCC 2 cut(s) 331, 332
PsuI RGATCY 2 cut(s) 18, 41
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 402
Sau3AI GATC 3 cut(s) 18, 41, 244
Sau96I GGNCC 2 cut(s) 331, 332
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 2 cut(s) 310, 416
ScrFI CCNGG 4 cut(s) 329, 330, 336, 453
SduI GDGCHC 3 cut(s) 290, 335, 361
SetI ASST 3 cut(s) 78, 376, 416
SfcI CTRYAG 1 cut(s) 22
SmaI CCCGGG 1 cut(s) 330
SphI GCATGC 1 cut(s) 443
Sse9I AATT 4 cut(s) 6, 172, 225, 259
SspMI CTAG 2 cut(s) 45, 123
StyD4I CCNGG 4 cut(s) 327, 328, 334, 451
TaaI ACNGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 284, 428
TasI AATT 4 cut(s) 6, 172, 225, 259
TatI WGTACW 1 cut(s) 212
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 3 cut(s) 20, 138, 245
TseFI GTSAC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 384
TspMI CCCGGG 1 cut(s) 328
TspRI CASTG 3 cut(s) 20, 138, 245
Van91I CCANNNNNTGG 1 cut(s) 215
XapI RAATTY 4 cut(s) 6, 172, 225, 259
XbaI TCTAGA 1 cut(s) 44
XceI RCATGY 2 cut(s) 439, 443
XmaI CCCGGG 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 2 cut(s) 45, 123
ZrmI AGTACT 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.