Rmu_sc0005132.1_g000023

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005132.1
OG0013109
Physical Location & Seq
Forward (+)
76763 .. 77307
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005132.1_g000023.1.cds

Sequence Viewer

Length: 471 bp
atgccctccctcaccacttgggctaaccccaagggcatccccagcaagaacctttttattagaataattcgaaactctatgcaaatgaatgagttggactattgtggagaagagccgtcaatgtctcctagagtggcagtgcaacatcagcatacaccgtcctctctgcatttcacaaattccggttttccaatatcttctggctcgtctgccccaagtactgggcagggaattcgttctgagcagtgtgatcagcagtccaagaattctgtcttctcaaatgctctgtcgagccctgttcgccagagtcttcagcactatcacatttcttacccgggccctggtctgccatctggaaatggtgcccgaaacaatgaacctaactttcttcaaccaaacagggatgttaatcctccaagctccaacgactcttcgatggacatgcatgcagatagtcctggtcactactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

156

Amino Acids

16.99

Weight (kDa)

6.64

Isoelectric Point (pI)

76.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09830
fragaria_vesca FvH4_2g13040
malus_domestica MD05G1033000.v1.1 MD10G1034000.v1.1
prunus_persica Prupe.8G040300_v2.0.a1
pyrus_communis pycom05g02400 pycom10g02250
rosa_chinensis RchiOBHm_Chr6g0274261
rosa_laevigata RLG00000013560
rosa_multiflora Rmu_sc0005132.1_g000023 Rmu_sc0007877.1_g000001
rosa_roxburghii Rroxscaffold_7G00194380
rosa_rugosa Rorug06G0080700.1
rosa_samantha Rh6AG195300 Rh6BG199900 Rh6CG199800 Rh6DG191300
rosa_wichuraiana Rw6G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 221
AcsI RAATTY 3 cut(s) 178, 231, 265
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 221, 341
AgsI TTSAA 1 cut(s) 392
AjnI CCWGG 2 cut(s) 340, 457
AluBI AGCT 1 cut(s) 420
AluI AGCT 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 1 cut(s) 337
ApaI GGGCCC 1 cut(s) 341
ApoI RAATTY 3 cut(s) 178, 231, 265
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
Asp700I GAANNNNTTC 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 337, 338
AsuC2I CCSGG 2 cut(s) 335, 336
AsuHPI GGTGA 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 334
BaeGI GKGCMC 2 cut(s) 341, 367
BanI GGYRCC 1 cut(s) 362
BanII GRGCYC 2 cut(s) 296, 341
BbsI GAAGAC 2 cut(s) 265, 302
BccI CCATC 2 cut(s) 358, 430
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 4 cut(s) 215, 249, 424, 458
BciT130I CCWGG 2 cut(s) 342, 459
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 2 cut(s) 335, 336
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 129
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 4 cut(s) 335, 336, 342, 459
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 337, 338
BmiI GGNNCC 2 cut(s) 339, 364
BmrFI CCNGG 4 cut(s) 335, 336, 342, 459
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 231
BpiI GAAGAC 2 cut(s) 265, 302
Bpu14I TTCGAA 1 cut(s) 70
BpuMI CCSGG 2 cut(s) 335, 336
BsaBI GATNNNNATC 1 cut(s) 408
BsaJI CCNNGG 3 cut(s) 30, 334, 340
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 341
Bse1I ACTGG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 2 cut(s) 342, 459
BseDI CCNNGG 3 cut(s) 30, 334, 340
BseGI GGATG 2 cut(s) 36, 409
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 2 cut(s) 221, 341
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 226
BseSI GKGCMC 2 cut(s) 341, 367
BseYI CCCAGC 1 cut(s) 41
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 2 cut(s) 183, 335
BslI CCNNNNNNNGG 2 cut(s) 221, 341
BsmAI GTCTC 1 cut(s) 129
BsnI GGCC 1 cut(s) 339
BsoBI CYCGRG 1 cut(s) 334
Bsp119I TTCGAA 1 cut(s) 70
Bsp120I GGGCCC 1 cut(s) 337
Bsp1286I GDGCHC 3 cut(s) 296, 341, 367
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 339, 364
BspQI GCTCTTC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 30, 334, 340
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 342, 459
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 105, 436
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 36, 409
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 3 cut(s) 42, 148, 300
BstNI CCWGG 2 cut(s) 342, 459
BstNSI RCATGY 2 cut(s) 445, 449
BstSCI CCNGG 4 cut(s) 333, 334, 340, 457
BstSLI GKGCMC 2 cut(s) 341, 367
BstV2I GAAGAC 2 cut(s) 265, 302
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 2 cut(s) 36, 409
BtsI GCAGTG 2 cut(s) 144, 251
BtsIMutI CAGTG 2 cut(s) 144, 251
Cac8I GCNNGC 1 cut(s) 447
Cfr13I GGNCC 2 cut(s) 337, 338
Cfr9I CCCGGG 1 cut(s) 334
Csp6I GTAC 1 cut(s) 219
CviAII CATG 2 cut(s) 442, 446
CviJI RGCY 6 cut(s) 23, 115, 204, 294, 339, 420
CviKI_1 RGCY 6 cut(s) 23, 115, 204, 294, 339, 420
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 105, 436
EarI CTCTTC 2 cut(s) 105, 436
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 2 cut(s) 296, 341
Eco57I CTGAAG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 338
EcoRI GAATTC 2 cut(s) 231, 265
EcoRII CCWGG 2 cut(s) 340, 457
EcoT14I CCWWGG 1 cut(s) 30
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 2 cut(s) 296, 341
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 2 cut(s) 445, 449
FaiI YATR 4 cut(s) 80, 153, 443, 447
FatI CATG 2 cut(s) 441, 445
FbaI TGATCA 1 cut(s) 250
FokI GGATG 2 cut(s) 23, 416
FriOI GRGCYC 2 cut(s) 296, 341
FspBI CTAG 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 339
HapII CCGG 2 cut(s) 183, 335
Hin1II CATG 2 cut(s) 445, 449
HinfI GANTC 2 cut(s) 307, 428
HpaII CCGG 2 cut(s) 183, 335
HphI GGTGA 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 354
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 5 cut(s) 82, 142, 169, 445, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 148, 300
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 2 cut(s) 445, 449
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 250
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 425
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 461
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 6 cut(s) 122, 189, 265, 302, 380, 423
MhlI GDGCHC 3 cut(s) 296, 341, 367
MluCI AATT 4 cut(s) 66, 178, 231, 265
MlyI GAGTC 2 cut(s) 316, 422
MmeI TCCRAC 2 cut(s) 75, 447
MnlI CCTC 4 cut(s) 16, 20, 172, 423
Mph1103I ATGCAT 1 cut(s) 447
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 1 cut(s) 408
MspI CCGG 2 cut(s) 183, 335
MspR9I CCNGG 4 cut(s) 335, 336, 342, 459
MvaI CCWGG 2 cut(s) 342, 459
MwoI GCNNNNNNNGC 3 cut(s) 42, 148, 300
NciI CCSGG 2 cut(s) 335, 336
NdeII GATC 1 cut(s) 250
NlaIII CATG 2 cut(s) 445, 449
NlaIV GGNNCC 2 cut(s) 339, 364
NmuCI GTSAC 1 cut(s) 461
NsiI ATGCAT 1 cut(s) 447
NspI RCATGY 2 cut(s) 445, 449
NspV TTCGAA 1 cut(s) 70
PaeI GCATGC 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 221
PleI GAGTC 2 cut(s) 315, 422
PpsI GAGTC 2 cut(s) 315, 422
Psp6I CCWGG 2 cut(s) 340, 457
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 2 cut(s) 340, 457
PspN4I GGNNCC 2 cut(s) 339, 364
PspOMI GGGCCC 1 cut(s) 337
PspPI GGNCC 2 cut(s) 337, 338
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 408
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 2 cut(s) 337, 338
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 2 cut(s) 316, 422
ScrFI CCNGG 4 cut(s) 335, 336, 342, 459
SduI GDGCHC 3 cut(s) 296, 341, 367
SetI ASST 3 cut(s) 54, 382, 422
SfaNI GCATC 1 cut(s) 45
SfuI TTCGAA 1 cut(s) 70
SmaI CCCGGG 1 cut(s) 336
SphI GCATGC 1 cut(s) 449
Sse9I AATT 4 cut(s) 66, 178, 231, 265
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 4 cut(s) 333, 334, 340, 457
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 3 cut(s) 70, 290, 434
TasI AATT 4 cut(s) 66, 178, 231, 265
TatI WGTACW 1 cut(s) 218
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 2 cut(s) 144, 251
TseFI GTSAC 1 cut(s) 461
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 101, 390
TspMI CCCGGG 1 cut(s) 334
TspRI CASTG 2 cut(s) 144, 251
Van91I CCANNNNNTGG 1 cut(s) 221
XapI RAATTY 3 cut(s) 178, 231, 265
XceI RCATGY 2 cut(s) 445, 449
XmaI CCCGGG 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 220
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.