Rh6AG195300

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013109
Physical Location & Seq
Forward (+)
35105667 .. 35110799
5133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG195300.1

Sequence Viewer

Length: 624 bp
ATGGGGAAGAAGAGAAAGTCGGTCGCCACCAGCCTTGACGAGGTGGATCGAAGCATGTACACCTCCTTCTGCAGCGCTGCCAATTCCCTCTCTCAGCTCTACACACAAGCCATGAACCACCAGAAGCTTTCCTTCCAAGCCGGTGAACGCCATGCCCTCGATAAAATTTATCAGTGGATCTGTAGACAACAAGAAGGGGGATCTAGAGTTGCAACGGGCGATATACTCAACTACCTTCAGAATGAGTTGGACTATTGTGGAGAAGAGCCGTCAATGTCTCCTAGAGTGGCAGTGCAACATCAGCATACACCGTCCTCTCTGCATTTCACAAATTCCGGTTTTCCAATATCTTCTGGCTCGTCTGCCCCAAGTACTGGGCAGGGAATTCGTTCTGAGCAGTGTGATCAGCAGTCCAAGAATTCTGTCTTCTCAAATGCTCTGTCGAGCCCTGTTCGCCAGAGTCTTCAGCACTATCACATTTCTTACCCGGGCCCTGGTCTGCCATCTGGAAATGGTGCCCGAAACAATGAACCTAACTTTCTTCAACCAAACAGGGATGTTAATCCTCCAAGCTCCAACGACTCTTCGATGGACATGCATGCAGATAGTCCTGGTCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

207

Amino Acids

22.71

Weight (kDa)

6.49

Isoelectric Point (pI)

67.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAPR1-like PF15251 15 - 196 2.5e-06 Telomere attrition and p53 response 1 protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09830
fragaria_vesca FvH4_2g13040
malus_domestica MD05G1033000.v1.1 MD10G1034000.v1.1
prunus_persica Prupe.8G040300_v2.0.a1
pyrus_communis pycom05g02400 pycom10g02250
rosa_chinensis RchiOBHm_Chr6g0274261
rosa_laevigata RLG00000013560
rosa_multiflora Rmu_sc0005132.1_g000023 Rmu_sc0007877.1_g000001
rosa_roxburghii Rroxscaffold_7G00194380
rosa_rugosa Rorug06G0080700.1
rosa_samantha Rh6AG195300 Rh6BG199900 Rh6CG199800 Rh6DG191300
rosa_wichuraiana Rw6G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 515
AccB7I CCANNNNNTGG 1 cut(s) 374
AccI GTMKAC 1 cut(s) 184
AclWI GGATC 3 cut(s) 54, 185, 208
AcsI RAATTY 4 cut(s) 165, 331, 384, 418
AcuI CTGAAG 2 cut(s) 221, 449
AfaI GTAC 2 cut(s) 59, 373
AfeI AGCGCT 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 40, 374, 494
AgsI TTSAA 1 cut(s) 545
AjnI CCWGG 2 cut(s) 493, 610
AluBI AGCT 3 cut(s) 97, 127, 573
AluI AGCT 3 cut(s) 97, 127, 573
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 3 cut(s) 54, 185, 208
Ama87I CYCGRG 1 cut(s) 487
Aor51HI AGCGCT 1 cut(s) 76
AoxI GGCC 1 cut(s) 490
ApaI GGGCCC 1 cut(s) 494
ApeKI GCWGC 2 cut(s) 72, 77
ApoI RAATTY 4 cut(s) 165, 331, 384, 418
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
Asp700I GAANNNNTTC 1 cut(s) 388
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 490, 491
AsuC2I CCSGG 2 cut(s) 488, 489
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 487
BaeGI GKGCMC 2 cut(s) 494, 520
BanI GGYRCC 1 cut(s) 515
BanII GRGCYC 2 cut(s) 449, 494
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
BbsI GAAGAC 2 cut(s) 418, 455
BbvI GCAGC 2 cut(s) 64, 84
BccI CCATC 2 cut(s) 511, 583
BceAI ACGGC 1 cut(s) 253
BcgI CGANNNNNNTGC 4 cut(s) 368, 402, 577, 611
BciT130I CCWGG 2 cut(s) 495, 612
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 2 cut(s) 488, 489
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 2 cut(s) 204, 282
BfmI CTRYAG 2 cut(s) 70, 181
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 2 cut(s) 73, 78
BlsI GCNGC 2 cut(s) 74, 79
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 4 cut(s) 488, 489, 495, 612
BmeT110I CYCGRG 1 cut(s) 487
BmgT120I GGNCC 2 cut(s) 490, 491
BmiI GGNNCC 2 cut(s) 492, 517
BmrFI CCNGG 4 cut(s) 488, 489, 495, 612
BmrI ACTGGG 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 2 cut(s) 418, 455
BpuMI CCSGG 2 cut(s) 488, 489
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 487, 493
BsaWI WCCGGW 1 cut(s) 335
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 374, 494
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 379
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 2 cut(s) 495, 612
BseDI CCNNGG 2 cut(s) 487, 493
BseGI GGATG 1 cut(s) 562
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 3 cut(s) 40, 374, 494
BseMII CTCAG 2 cut(s) 107, 384
BseNI ACTGG 1 cut(s) 379
BseSI GKGCMC 2 cut(s) 494, 520
BseXI GCAGC 2 cut(s) 64, 84
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 492
BshNI GGYRCC 1 cut(s) 515
BsiEI CGRYCG 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 3 cut(s) 141, 336, 488
BslI CCNNNNNNNGG 3 cut(s) 40, 374, 494
BsmAI GTCTC 1 cut(s) 282
BsnI GGCC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 487
Bsp120I GGGCCC 1 cut(s) 490
Bsp1286I GDGCHC 3 cut(s) 449, 494, 520
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 4 cut(s) 46, 177, 200, 403
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 2 cut(s) 106, 385
BspLI GGNNCC 2 cut(s) 492, 517
BspMAI CTGCAG 1 cut(s) 74
BspPI GGATC 3 cut(s) 54, 185, 208
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 515
BsrFI RCCGGY 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 57
BsrI ACTGG 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 487, 493
BssMI GATC 4 cut(s) 46, 177, 200, 403
Bst2UI CCWGG 2 cut(s) 495, 612
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 3 cut(s) 5, 258, 589
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 2 cut(s) 93, 393
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 49, 180, 203, 406
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 4 cut(s) 46, 177, 200, 403
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 301, 453
BstNI CCWGG 2 cut(s) 495, 612
BstNSI RCATGY 3 cut(s) 58, 598, 602
BstSCI CCNGG 4 cut(s) 486, 487, 493, 610
BstSFI CTRYAG 2 cut(s) 70, 181
BstSLI GKGCMC 2 cut(s) 494, 520
BstV1I GCAGC 2 cut(s) 64, 84
BstV2I GAAGAC 2 cut(s) 418, 455
BstX2I RGATCY 2 cut(s) 177, 200
BstYI RGATCY 2 cut(s) 177, 200
BsuRI GGCC 1 cut(s) 492
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 2 cut(s) 297, 404
BtsIMutI CAGTG 3 cut(s) 179, 297, 404
Cac8I GCNNGC 1 cut(s) 600
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 490, 491
Cfr9I CCCGGG 1 cut(s) 487
Csp6I GTAC 2 cut(s) 58, 372
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 5 cut(s) 55, 112, 152, 595, 599
CviQI GTAC 2 cut(s) 58, 372
DdeI CTNAG 2 cut(s) 93, 393
DpnI GATC 4 cut(s) 48, 179, 202, 405
DpnII GATC 4 cut(s) 46, 177, 200, 403
Eam1104I CTCTTC 3 cut(s) 5, 258, 589
EarI CTCTTC 3 cut(s) 5, 258, 589
Eco24I GRGCYC 2 cut(s) 449, 494
Eco47III AGCGCT 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 221, 449
Eco88I CYCGRG 1 cut(s) 487
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 491
EcoRI GAATTC 2 cut(s) 384, 418
EcoRII CCWGG 2 cut(s) 493, 610
EcoT22I ATGCAT 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 449, 494
FaeI CATG 5 cut(s) 58, 115, 155, 598, 602
FaiI YATR 7 cut(s) 56, 113, 153, 224, 306, 596, 600
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 5 cut(s) 54, 111, 151, 594, 598
FbaI TGATCA 1 cut(s) 403
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 73, 78
FokI GGATG 1 cut(s) 569
FriOI GRGCYC 2 cut(s) 449, 494
Fsp4HI GCNGC 2 cut(s) 73, 78
FspBI CTAG 2 cut(s) 204, 282
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 73, 78
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 492
HapII CCGG 3 cut(s) 141, 336, 488
HhaI GCGC 1 cut(s) 77
Hin1II CATG 5 cut(s) 58, 115, 155, 598, 602
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 460, 581
HpaII CCGG 3 cut(s) 141, 336, 488
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 3 cut(s) 60, 146, 185
Hpy188I TCNGA 2 cut(s) 240, 394
Hpy188III TCNNGA 2 cut(s) 204, 507
Hpy8I GTNNAC 3 cut(s) 60, 146, 185
HpyAV CCTTC 4 cut(s) 76, 142, 188, 245
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 6 cut(s) 72, 212, 295, 322, 598, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 453
HpyF3I CTNAG 2 cut(s) 93, 393
Hsp92II CATG 5 cut(s) 58, 115, 155, 598, 602
HspAI GCGC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 4 cut(s) 46, 177, 200, 403
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 578
Lsp1109I GCAGC 2 cut(s) 64, 84
MaeI CTAG 2 cut(s) 204, 282
MaeIII GTNAC 1 cut(s) 614
MalI GATC 4 cut(s) 48, 179, 202, 405
MboI GATC 4 cut(s) 46, 177, 200, 403
MboII GAAGA 8 cut(s) 19, 22, 275, 342, 418, 455, 533, 576
MflI RGATCY 2 cut(s) 177, 200
MhlI GDGCHC 3 cut(s) 449, 494, 520
MluCI AATT 5 cut(s) 82, 165, 331, 384, 418
MlyI GAGTC 2 cut(s) 469, 575
MmeI TCCRAC 2 cut(s) 228, 600
MnlI CCTC 6 cut(s) 34, 73, 98, 167, 325, 576
Mph1103I ATGCAT 1 cut(s) 600
MroXI GAANNNNTTC 1 cut(s) 388
MseI TTAA 1 cut(s) 561
MspI CCGG 3 cut(s) 141, 336, 488
MspR9I CCNGG 4 cut(s) 488, 489, 495, 612
MvaI CCWGG 2 cut(s) 495, 612
MwoI GCNNNNNNNGC 2 cut(s) 301, 453
NciI CCSGG 2 cut(s) 488, 489
NdeII GATC 4 cut(s) 46, 177, 200, 403
NlaIII CATG 5 cut(s) 58, 115, 155, 598, 602
NlaIV GGNNCC 2 cut(s) 492, 517
NmuCI GTSAC 1 cut(s) 614
NsiI ATGCAT 1 cut(s) 600
NspI RCATGY 3 cut(s) 58, 598, 602
PaeI GCATGC 1 cut(s) 602
PciSI GCTCTTC 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 2 cut(s) 74, 79
PleI GAGTC 2 cut(s) 468, 575
PpsI GAGTC 2 cut(s) 468, 575
Psp6I CCWGG 2 cut(s) 493, 610
PspGI CCWGG 2 cut(s) 493, 610
PspN4I GGNNCC 2 cut(s) 492, 517
PspOMI GGGCCC 1 cut(s) 490
PspPI GGNCC 2 cut(s) 490, 491
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 2 cut(s) 177, 200
RsaI GTAC 2 cut(s) 59, 373
RsaNI GTAC 2 cut(s) 58, 372
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 2 cut(s) 73, 78
Sau3AI GATC 4 cut(s) 46, 177, 200, 403
Sau96I GGNCC 2 cut(s) 490, 491
ScaI AGTACT 1 cut(s) 373
SchI GAGTC 2 cut(s) 469, 575
ScrFI CCNGG 4 cut(s) 488, 489, 495, 612
SduI GDGCHC 3 cut(s) 449, 494, 520
SetI ASST 7 cut(s) 45, 65, 99, 129, 237, 535, 575
SfcI CTRYAG 2 cut(s) 70, 181
SmaI CCCGGG 1 cut(s) 489
SphI GCATGC 1 cut(s) 602
Sse9I AATT 5 cut(s) 82, 165, 331, 384, 418
SspMI CTAG 2 cut(s) 204, 282
StyD4I CCNGG 4 cut(s) 486, 487, 493, 610
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 4 cut(s) 49, 159, 443, 587
TaqII GACCGA 1 cut(s) 10
TasI AATT 5 cut(s) 82, 165, 331, 384, 418
TatI WGTACW 2 cut(s) 57, 371
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 3 cut(s) 179, 297, 404
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 2 cut(s) 72, 77
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 2 cut(s) 128, 543
TspMI CCCGGG 1 cut(s) 487
TspRI CASTG 3 cut(s) 179, 297, 404
Van91I CCANNNNNTGG 1 cut(s) 374
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 4 cut(s) 165, 331, 384, 418
XbaI TCTAGA 1 cut(s) 203
XceI RCATGY 3 cut(s) 58, 598, 602
XmaI CCCGGG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 388
XspI CTAG 2 cut(s) 204, 282
ZrmI AGTACT 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.