Rh6BG199900

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013109
Physical Location & Seq
Forward (+)
37654452 .. 37659507
5056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG199900.1

Sequence Viewer

Length: 498 bp
ATGAACTTTAATTATTATTATTTTTTTTTTCAGGATAAAATTTATCAGTGGATCTGTAGACAACAAGAAGGGGGATCTAGAGTTGCAACAGGCGATATACTCAACTACCTTCAGAATGAGTTGGACTATTGTGGAGAAGAGCCGTCAATGTCTCCTAGAGTGGCAGTGCAACATCAGCATACACCGTCCTCTCTGCATTTCACAAATTCCGGTTTTCCAATATCTTCTGGCTCGTCTGCCCCAAGTACTGGGCAGGGAATTCGTTCTGAGCAGTGTGATCAGCAGTCCAAGAATTCTGTCTTCTCAAATGCTCTGTCGAGCCCTGTTCGCCAGAGTCTTCAGCACTATCACATTTCTTACCCGGGCCCTGGTCTGCCATCTGGAAATGGTGCCCGAAACAATGAACCTAACTTTCTTCAACCAAACAGGGATGTTAATCCTCCAAGCTCCAACGACTCTTCGATGGACATGCATGCAGATAGTCCTGGTCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

165

Amino Acids

18.37

Weight (kDa)

5.71

Isoelectric Point (pI)

79.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09830
fragaria_vesca FvH4_2g13040
malus_domestica MD05G1033000.v1.1 MD10G1034000.v1.1
prunus_persica Prupe.8G040300_v2.0.a1
pyrus_communis pycom05g02400 pycom10g02250
rosa_chinensis RchiOBHm_Chr6g0274261
rosa_laevigata RLG00000013560
rosa_multiflora Rmu_sc0005132.1_g000023 Rmu_sc0007877.1_g000001
rosa_roxburghii Rroxscaffold_7G00194380
rosa_rugosa Rorug06G0080700.1
rosa_samantha Rh6AG195300 Rh6BG199900 Rh6CG199800 Rh6DG191300
rosa_wichuraiana Rw6G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AccB7I CCANNNNNTGG 1 cut(s) 248
AccI GTMKAC 1 cut(s) 58
AclWI GGATC 2 cut(s) 59, 82
AcsI RAATTY 4 cut(s) 39, 205, 258, 292
AcuI CTGAAG 2 cut(s) 95, 323
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 248, 368
AgsI TTSAA 1 cut(s) 419
AjnI CCWGG 2 cut(s) 367, 484
AluBI AGCT 1 cut(s) 447
AluI AGCT 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 59, 82
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 1 cut(s) 364
ApaI GGGCCC 1 cut(s) 368
ApoI RAATTY 4 cut(s) 39, 205, 258, 292
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
Asp700I GAANNNNTTC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 364, 365
AsuC2I CCSGG 2 cut(s) 362, 363
AvaI CYCGRG 1 cut(s) 361
BaeGI GKGCMC 2 cut(s) 368, 394
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 2 cut(s) 323, 368
BbsI GAAGAC 2 cut(s) 292, 329
BccI CCATC 2 cut(s) 385, 457
BceAI ACGGC 1 cut(s) 127
BcgI CGANNNNNNTGC 4 cut(s) 242, 276, 451, 485
BciT130I CCWGG 2 cut(s) 369, 486
BclI TGATCA 1 cut(s) 277
BcnI CCSGG 2 cut(s) 362, 363
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 2 cut(s) 78, 156
BfmI CTRYAG 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 4 cut(s) 362, 363, 369, 486
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 364, 365
BmiI GGNNCC 2 cut(s) 366, 391
BmrFI CCNGG 4 cut(s) 362, 363, 369, 486
BmrI ACTGGG 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 258
BpiI GAAGAC 2 cut(s) 292, 329
BpuMI CCSGG 2 cut(s) 362, 363
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 2 cut(s) 361, 367
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 368
Bse1I ACTGG 1 cut(s) 253
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 2 cut(s) 369, 486
BseDI CCNNGG 2 cut(s) 361, 367
BseGI GGATG 1 cut(s) 436
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 2 cut(s) 248, 368
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 253
BseSI GKGCMC 2 cut(s) 368, 394
BshFI GGCC 1 cut(s) 366
BshNI GGYRCC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 2 cut(s) 210, 362
BslI CCNNNNNNNGG 2 cut(s) 248, 368
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 1 cut(s) 366
BsoBI CYCGRG 1 cut(s) 361
Bsp120I GGGCCC 1 cut(s) 364
Bsp1286I GDGCHC 3 cut(s) 323, 368, 394
Bsp143I GATC 3 cut(s) 51, 74, 277
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 366, 391
BspPI GGATC 2 cut(s) 59, 82
BspQI GCTCTTC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 389
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 361, 367
BssMI GATC 3 cut(s) 51, 74, 277
Bst2UI CCWGG 2 cut(s) 369, 486
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 2 cut(s) 132, 463
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 3 cut(s) 54, 77, 280
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 3 cut(s) 51, 74, 277
BstMWI GCNNNNNNNGC 2 cut(s) 175, 327
BstNI CCWGG 2 cut(s) 369, 486
BstNSI RCATGY 2 cut(s) 472, 476
BstSCI CCNGG 4 cut(s) 360, 361, 367, 484
BstSFI CTRYAG 1 cut(s) 55
BstSLI GKGCMC 2 cut(s) 368, 394
BstV2I GAAGAC 2 cut(s) 292, 329
BstX2I RGATCY 2 cut(s) 51, 74
BstYI RGATCY 2 cut(s) 51, 74
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 2 cut(s) 171, 278
BtsIMutI CAGTG 3 cut(s) 53, 171, 278
Cac8I GCNNGC 1 cut(s) 474
Cfr13I GGNCC 2 cut(s) 364, 365
Cfr9I CCCGGG 1 cut(s) 361
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 469, 473
CviJI RGCY 5 cut(s) 142, 231, 321, 366, 447
CviKI_1 RGCY 5 cut(s) 142, 231, 321, 366, 447
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 267
DpnI GATC 3 cut(s) 53, 76, 279
DpnII GATC 3 cut(s) 51, 74, 277
Eam1104I CTCTTC 2 cut(s) 132, 463
EarI CTCTTC 2 cut(s) 132, 463
Eco24I GRGCYC 2 cut(s) 323, 368
Eco57I CTGAAG 2 cut(s) 95, 323
Eco88I CYCGRG 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 365
EcoRI GAATTC 2 cut(s) 258, 292
EcoRII CCWGG 2 cut(s) 367, 484
EcoT22I ATGCAT 1 cut(s) 474
EcoT38I GRGCYC 2 cut(s) 323, 368
FaeI CATG 2 cut(s) 472, 476
FaiI YATR 4 cut(s) 98, 180, 470, 474
FatI CATG 2 cut(s) 468, 472
FbaI TGATCA 1 cut(s) 277
FblI GTMKAC 1 cut(s) 58
FokI GGATG 1 cut(s) 443
FriOI GRGCYC 2 cut(s) 323, 368
FspBI CTAG 2 cut(s) 78, 156
HaeIII GGCC 1 cut(s) 366
HapII CCGG 2 cut(s) 210, 362
Hin1II CATG 2 cut(s) 472, 476
HinfI GANTC 2 cut(s) 334, 455
HpaII CCGG 2 cut(s) 210, 362
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 114, 268
Hpy188III TCNNGA 3 cut(s) 32, 78, 381
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 62, 119
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 5 cut(s) 86, 169, 196, 472, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 327
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 2 cut(s) 472, 476
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 3 cut(s) 51, 74, 277
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 452
MaeI CTAG 2 cut(s) 78, 156
MaeIII GTNAC 1 cut(s) 488
MalI GATC 3 cut(s) 53, 76, 279
MboI GATC 3 cut(s) 51, 74, 277
MboII GAAGA 6 cut(s) 149, 216, 292, 329, 407, 450
MflI RGATCY 2 cut(s) 51, 74
MhlI GDGCHC 3 cut(s) 323, 368, 394
MluCI AATT 5 cut(s) 10, 39, 205, 258, 292
MlyI GAGTC 2 cut(s) 343, 449
MmeI TCCRAC 2 cut(s) 102, 474
MnlI CCTC 2 cut(s) 199, 450
Mph1103I ATGCAT 1 cut(s) 474
MroXI GAANNNNTTC 1 cut(s) 262
MseI TTAA 2 cut(s) 9, 435
MspI CCGG 2 cut(s) 210, 362
MspR9I CCNGG 4 cut(s) 362, 363, 369, 486
MvaI CCWGG 2 cut(s) 369, 486
MwoI GCNNNNNNNGC 2 cut(s) 175, 327
NciI CCSGG 2 cut(s) 362, 363
NdeII GATC 3 cut(s) 51, 74, 277
NlaIII CATG 2 cut(s) 472, 476
NlaIV GGNNCC 2 cut(s) 366, 391
NmuCI GTSAC 1 cut(s) 488
NsiI ATGCAT 1 cut(s) 474
NspI RCATGY 2 cut(s) 472, 476
PaeI GCATGC 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 248
PleI GAGTC 2 cut(s) 342, 449
PpsI GAGTC 2 cut(s) 342, 449
Psp6I CCWGG 2 cut(s) 367, 484
PspGI CCWGG 2 cut(s) 367, 484
PspN4I GGNNCC 2 cut(s) 366, 391
PspOMI GGGCCC 1 cut(s) 364
PspPI GGNCC 2 cut(s) 364, 365
PsuI RGATCY 2 cut(s) 51, 74
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 9, 435
Sau3AI GATC 3 cut(s) 51, 74, 277
Sau96I GGNCC 2 cut(s) 364, 365
ScaI AGTACT 1 cut(s) 247
SchI GAGTC 2 cut(s) 343, 449
ScrFI CCNGG 4 cut(s) 362, 363, 369, 486
SduI GDGCHC 3 cut(s) 323, 368, 394
SetI ASST 3 cut(s) 111, 409, 449
SfcI CTRYAG 1 cut(s) 55
SmaI CCCGGG 1 cut(s) 363
SphI GCATGC 1 cut(s) 476
Sse9I AATT 5 cut(s) 10, 39, 205, 258, 292
SspMI CTAG 2 cut(s) 78, 156
StyD4I CCNGG 4 cut(s) 360, 361, 367, 484
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 317, 461
TasI AATT 5 cut(s) 10, 39, 205, 258, 292
TatI WGTACW 1 cut(s) 245
Tru1I TTAA 2 cut(s) 9, 435
Tru9I TTAA 2 cut(s) 9, 435
TscAI CASTG 3 cut(s) 53, 171, 278
TseFI GTSAC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 2 cut(s) 17, 417
TspMI CCCGGG 1 cut(s) 361
TspRI CASTG 3 cut(s) 53, 171, 278
Van91I CCANNNNNTGG 1 cut(s) 248
XapI RAATTY 4 cut(s) 39, 205, 258, 292
XbaI TCTAGA 1 cut(s) 77
XceI RCATGY 2 cut(s) 472, 476
XmaI CCCGGG 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 262
XspI CTAG 2 cut(s) 78, 156
ZrmI AGTACT 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.