Prupe.8G040300_v2.0.a1

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013109
Physical Location & Seq
Reverse (-)
4004226 .. 4008611
4386 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G040300.1

Sequence Viewer

Length: 651 bp
ATGGGGAAGAAGAGAAAGTCCATAGCCACCAGCCTCGACGAGGTGGATCGAAGCATGTACACCTCCTTCTGCAGCGCCGCTAATTCTCTCTCTCAGCTCTACACTCAGGCCATGAACCACCAAAAGCTCTCCTTTCAAGCCGGTGAACGCCACGCCCTCGATAAAATTTATCAGTGGATCAGTAGACAACAAGAAGGAGGCTCAAGAGTTACAACAATGGATATAGTCAGTTATCTTCAGAATGAGTTGGACTATTGTGGAGAGGAGCAGCCGTCAATGTCCCCCAGGGTGCCACTTCAACATCAGCATCTTCAGCCCACTGTGCATTTCACAAACTCAGGTTTCCCAGTTTCTTCTGGCTCATCTGGCCCAACAAATACTGGGCAGGGAATTCGTTCTGAGCAATGTGATCACCAATCTAAAAATTCAGTCTTCTCAAATGCTTTGTCAAGCCCTGTTCGCCAGAGTCTTCAGCACTATCACATTTCTCAAGATGGATATTACCCAGGTGCAGGTCTGCCATCTGGAAATGGAGCCCGAAACAATGAACCTAGCTTTCTCCACCCGAACCGGGATGCTAATCCTCCAAGTTCCAATGACACCTCGATGGACATGCATGCAGATAGTCCTGGTCATGATTCTACCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

217

Amino Acids

23.81

Weight (kDa)

6.23

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09830
fragaria_vesca FvH4_2g13040
malus_domestica MD05G1033000.v1.1 MD10G1034000.v1.1
prunus_persica Prupe.8G040300_v2.0.a1
pyrus_communis pycom05g02400 pycom10g02250
rosa_chinensis RchiOBHm_Chr6g0274261
rosa_laevigata RLG00000013560
rosa_multiflora Rmu_sc0005132.1_g000023 Rmu_sc0007877.1_g000001
rosa_roxburghii Rroxscaffold_7G00194380
rosa_rugosa Rorug06G0080700.1
rosa_samantha Rh6AG195300 Rh6BG199900 Rh6CG199800 Rh6DG191300
rosa_wichuraiana Rw6G017090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 184
AciI CCGC 1 cut(s) 78
AclWI GGATC 2 cut(s) 54, 185
AcsI RAATTY 3 cut(s) 165, 390, 424
AcuI CTGAAG 3 cut(s) 221, 296, 455
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 3 cut(s) 40, 512, 571
AgsI TTSAA 2 cut(s) 137, 299
AjnI CCWGG 3 cut(s) 284, 505, 628
AluBI AGCT 3 cut(s) 97, 127, 555
AluI AGCT 3 cut(s) 97, 127, 555
AlwI GGATC 2 cut(s) 54, 185
AoxI GGCC 2 cut(s) 108, 367
ApeKI GCWGC 2 cut(s) 72, 268
ApoI RAATTY 3 cut(s) 165, 390, 424
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
Asp700I GAANNNNTTC 1 cut(s) 394
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 155, 404
BanI GGYRCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 538
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
BbsI GAAGAC 2 cut(s) 424, 461
BbvI GCAGC 2 cut(s) 84, 280
BccI CCATC 3 cut(s) 488, 529, 601
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 4 cut(s) 374, 408, 595, 629
BciT130I CCWGG 3 cut(s) 286, 507, 630
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 572
BfaI CTAG 1 cut(s) 552
BfmI CTRYAG 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 503
BisI GCNGC 3 cut(s) 73, 78, 269
BlsI GCNGC 3 cut(s) 74, 79, 270
Bme1390I CCNGG 4 cut(s) 286, 507, 572, 630
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 2 cut(s) 291, 535
BmrFI CCNGG 4 cut(s) 286, 507, 572, 630
BmrI ACTGGG 2 cut(s) 341, 390
BmsI GCATC 2 cut(s) 316, 565
BmuI ACTGGG 2 cut(s) 341, 390
BpiI GAAGAC 2 cut(s) 424, 461
BpuEI CTTGAG 2 cut(s) 187, 474
BpuMI CCSGG 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 579
BsaJI CCNNGG 3 cut(s) 284, 285, 505
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 512, 571
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 347, 385
Bse3DI GCAATG 1 cut(s) 410
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 3 cut(s) 286, 507, 630
BseDI CCNNGG 3 cut(s) 284, 285, 505
BseGI GGATG 1 cut(s) 580
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 3 cut(s) 40, 512, 571
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 4 cut(s) 107, 119, 351, 390
BseNI ACTGG 2 cut(s) 347, 385
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 84, 280
BsgI GTGCAG 1 cut(s) 531
BshFI GGCC 2 cut(s) 110, 369
BshNI GGYRCC 1 cut(s) 289
BsiSI CCGG 2 cut(s) 141, 571
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 3 cut(s) 40, 512, 571
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 2 cut(s) 110, 369
Bsp1286I GDGCHC 1 cut(s) 538
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 3 cut(s) 46, 177, 409
BspACI CCGC 1 cut(s) 78
BspANI GGCC 2 cut(s) 110, 369
BspCNI CTCAG 4 cut(s) 106, 118, 350, 391
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 291, 535
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 503
BspPI GGATC 2 cut(s) 54, 185
BspT107I GGYRCC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 57
BsrI ACTGG 2 cut(s) 347, 385
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 3 cut(s) 284, 285, 505
BssMI GATC 3 cut(s) 46, 177, 409
Bst2UI CCWGG 3 cut(s) 286, 507, 630
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 4 cut(s) 93, 105, 337, 399
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 580
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 3 cut(s) 49, 180, 412
BstMBI GATC 3 cut(s) 46, 177, 409
BstMWI GCNNNNNNNGC 4 cut(s) 313, 322, 366, 459
BstNI CCWGG 3 cut(s) 286, 507, 630
BstNSI RCATGY 3 cut(s) 58, 616, 620
BstSCI CCNGG 4 cut(s) 284, 505, 570, 628
BstSFI CTRYAG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 84, 280
BstV2I GAAGAC 2 cut(s) 424, 461
BsuRI GGCC 2 cut(s) 110, 369
BtsCI GGATG 1 cut(s) 580
BtsIMutI CAGTG 2 cut(s) 179, 318
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 1 cut(s) 618
CciI TCATGA 1 cut(s) 634
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 58
CviAII CATG 5 cut(s) 55, 112, 613, 617, 635
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 4 cut(s) 93, 105, 337, 399
DpnI GATC 3 cut(s) 48, 179, 411
DpnII GATC 3 cut(s) 46, 177, 409
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 538
Eco57I CTGAAG 3 cut(s) 221, 296, 455
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 390
EcoRII CCWGG 3 cut(s) 284, 505, 628
EcoT22I ATGCAT 1 cut(s) 618
EcoT38I GRGCYC 1 cut(s) 538
FaeI CATG 5 cut(s) 58, 115, 616, 620, 638
FaiI YATR 7 cut(s) 23, 56, 113, 224, 614, 618, 636
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 1 cut(s) 265
FatI CATG 5 cut(s) 54, 111, 612, 616, 634
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 73, 78, 269
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 3 cut(s) 73, 78, 269
FspBI CTAG 1 cut(s) 552
GlaI GCGC 1 cut(s) 76
GluI GCNGC 3 cut(s) 73, 78, 269
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 2 cut(s) 110, 369
HapII CCGG 2 cut(s) 141, 571
HhaI GCGC 1 cut(s) 77
Hin1II CATG 5 cut(s) 58, 115, 616, 620, 638
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 2 cut(s) 466, 638
HpaII CCGG 2 cut(s) 141, 571
HphI GGTGA 2 cut(s) 155, 404
Hpy166II GTNNAC 3 cut(s) 60, 146, 185
Hpy188I TCNGA 2 cut(s) 240, 400
Hpy188III TCNNGA 4 cut(s) 204, 491, 525, 635
Hpy8I GTNNAC 3 cut(s) 60, 146, 185
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 76, 188
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 5 cut(s) 72, 325, 512, 616, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 322, 366, 459
HpyF3I CTNAG 4 cut(s) 93, 105, 337, 399
Hsp92II CATG 5 cut(s) 58, 115, 616, 620, 638
HspAI GCGC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 46, 177, 409
LmnI GCTCC 2 cut(s) 265, 533
Lsp1109I GCAGC 2 cut(s) 84, 280
LweI GCATC 2 cut(s) 316, 565
MaeI CTAG 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 208
MalI GATC 3 cut(s) 48, 179, 411
MboI GATC 3 cut(s) 46, 177, 409
MboII GAAGA 7 cut(s) 19, 22, 227, 302, 345, 424, 461
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 4 cut(s) 82, 165, 390, 424
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 8 cut(s) 34, 44, 73, 167, 191, 256, 594, 613
Mph1103I ATGCAT 1 cut(s) 618
MroXI GAANNNNTTC 1 cut(s) 394
MslI CAYNNNNRTG 1 cut(s) 605
MspI CCGG 2 cut(s) 141, 571
MspR9I CCNGG 4 cut(s) 286, 507, 572, 630
MvaI CCWGG 3 cut(s) 286, 507, 630
MwoI GCNNNNNNNGC 4 cut(s) 313, 322, 366, 459
NciI CCSGG 1 cut(s) 572
NdeII GATC 3 cut(s) 46, 177, 409
NlaIII CATG 5 cut(s) 58, 115, 616, 620, 638
NlaIV GGNNCC 2 cut(s) 291, 535
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 3 cut(s) 58, 616, 620
PaeI GCATGC 1 cut(s) 620
PagI TCATGA 1 cut(s) 634
PasI CCCWGGG 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 638
PkrI GCNGC 3 cut(s) 74, 79, 270
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
Psp6I CCWGG 3 cut(s) 284, 505, 628
PspGI CCWGG 3 cut(s) 284, 505, 628
PspN4I GGNNCC 2 cut(s) 291, 535
PspPI GGNCC 1 cut(s) 368
PstI CTGCAG 1 cut(s) 74
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 605
SatI GCNGC 3 cut(s) 73, 78, 269
Sau3AI GATC 3 cut(s) 46, 177, 409
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 4 cut(s) 286, 507, 572, 630
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 2 cut(s) 316, 565
SfcI CTRYAG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 2 cut(s) 202, 489
SmoI CTYRAG 2 cut(s) 202, 489
SphI GCATGC 1 cut(s) 620
Sse9I AATT 4 cut(s) 82, 165, 390, 424
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 552
StyD4I CCNGG 4 cut(s) 284, 505, 570, 628
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 4 cut(s) 36, 49, 159, 605
TasI AATT 4 cut(s) 82, 165, 390, 424
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 638
TscAI CASTG 2 cut(s) 179, 325
TseI GCWGC 2 cut(s) 72, 268
TspDTI ATGAA 2 cut(s) 128, 561
TspRI CASTG 2 cut(s) 179, 325
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 3 cut(s) 165, 390, 424
XceI RCATGY 3 cut(s) 58, 616, 620
XmiI GTMKAC 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 1 cut(s) 552
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.