KH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G33680 AT4G10070 |
| fragaria_vesca | FvH4_2g35080 FvH4_2g35080 FvH4_2g35080 |
| malus_domestica | MD08G1108100.v1.1 MD15G1088600.v1.1 MD15G1088800.v1.1 |
| prunus_persica | Prupe.1G442700_v2.0.a1 |
| pyrus_communis | pycom08g09010 pycom15g08310 |
| rosa_chinensis | RchiOBHm_Chr6g0306891 |
| rosa_laevigata | RLG00000010757 |
| rosa_multiflora | Rmu_co8448611.1_g000001 Rmu_co8474845.1_g000001 Rmu_sc0018770.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00161380 |
| rosa_rugosa | Rorug06G0354100 |
| rosa_samantha | Rh6AG465700 Rh6BG435100 Rh6CG480200 Rh6DG467100 |
| rosa_wichuraiana | Rw6G040590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 772, 1541, 1858 |
| Acc36I | ACCTGC | 4 cut(s) | 772, 1378, 1541, 1858 |
| AccB1I | GGYRCC | 1 cut(s) | 617 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1427, 1529, 1553, 1967 |
| AccBSI | CCGCTC | 1 cut(s) | 1811 |
| AccI | GTMKAC | 1 cut(s) | 524 |
| AciI | CCGC | 3 cut(s) | 35, 1098, 1809 |
| AclWI | GGATC | 6 cut(s) | 275, 288, 647, 802, 815, 2042 |
| AcoI | YGGCCR | 1 cut(s) | 862 |
| AcsI | RAATTY | 1 cut(s) | 630 |
| AcuI | CTGAAG | 3 cut(s) | 209, 587, 768 |
| AfaI | GTAC | 9 cut(s) | 258, 913, 1252, 1289, 1353, 1723, 1840, 1943, 2005 |
| AfeI | AGCGCT | 1 cut(s) | 1321 |
| AflIII | ACRYGT | 1 cut(s) | 1758 |
| AgeI | ACCGGT | 2 cut(s) | 1454, 1964 |
| AgsI | TTSAA | 4 cut(s) | 198, 555, 707, 952 |
| AjiI | CACGTC | 1 cut(s) | 1761 |
| AjnI | CCWGG | 2 cut(s) | 1093, 1588 |
| AleI | CACNNNNGTG | 1 cut(s) | 1158 |
| Alw21I | GWGCWC | 4 cut(s) | 662, 910, 1315, 1921 |
| Alw26I | GTCTC | 2 cut(s) | 581, 869 |
| Alw44I | GTGCAC | 1 cut(s) | 1917 |
| AlwI | GGATC | 6 cut(s) | 275, 288, 647, 802, 815, 2042 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 650, 746, 1937 |
| Aor51HI | AGCGCT | 1 cut(s) | 1321 |
| ApaLI | GTGCAC | 1 cut(s) | 1917 |
| ApoI | RAATTY | 1 cut(s) | 630 |
| AsiGI | ACCGGT | 2 cut(s) | 1454, 1964 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 222 |
| AspLEI | GCGC | 1 cut(s) | 1322 |
| AsuC2I | CCSGG | 1 cut(s) | 1200 |
| AsuHPI | GGTGA | 6 cut(s) | 407, 421, 500, 753, 953, 1685 |
| AvaII | GGWCC | 8 cut(s) | 1100, 1124, 1163, 1261, 1283, 1373, 1619, 1859 |
| AxyI | CCTNAGG | 2 cut(s) | 234, 354 |
| BaeGI | GKGCMC | 1 cut(s) | 1921 |
| BamHI | GGATCC | 2 cut(s) | 280, 807 |
| BanI | GGYRCC | 1 cut(s) | 617 |
| BanII | GRGCYC | 2 cut(s) | 662, 1315 |
| BauI | CACGAG | 2 cut(s) | 1119, 1158 |
| BbsI | GAAGAC | 2 cut(s) | 186, 1309 |
| Bbv12I | GWGCWC | 4 cut(s) | 662, 910, 1315, 1921 |
| BciT130I | CCWGG | 2 cut(s) | 1095, 1590 |
| BciVI | GTATCC | 2 cut(s) | 1964, 2021 |
| BclI | TGATCA | 1 cut(s) | 340 |
| BcnI | CCSGG | 1 cut(s) | 1200 |
| BcoDI | GTCTC | 2 cut(s) | 581, 869 |
| BfaI | CTAG | 4 cut(s) | 140, 770, 777, 1236 |
| BfmI | CTRYAG | 3 cut(s) | 1653, 1801, 1929 |
| BfoI | RGCGCY | 1 cut(s) | 1323 |
| BfuAI | ACCTGC | 4 cut(s) | 772, 1378, 1541, 1858 |
| BfuI | GTATCC | 2 cut(s) | 1964, 2021 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 870 |
| BlpI | GCTNAGC | 1 cut(s) | 661 |
| BmcAI | AGTACT | 1 cut(s) | 1723 |
| Bme1390I | CCNGG | 3 cut(s) | 1095, 1200, 1590 |
| Bme18I | GGWCC | 8 cut(s) | 1100, 1124, 1163, 1261, 1283, 1373, 1619, 1859 |
| BmgBI | CACGTC | 1 cut(s) | 1761 |
| BmiI | GGNNCC | 8 cut(s) | 231, 282, 619, 782, 809, 1262, 1375, 1734 |
| BmrFI | CCNGG | 3 cut(s) | 1095, 1200, 1590 |
| BmrI | ACTGGG | 1 cut(s) | 1322 |
| BmsI | GCATC | 3 cut(s) | 975, 1506, 1599 |
| BmuI | ACTGGG | 1 cut(s) | 1322 |
| BpiI | GAAGAC | 2 cut(s) | 186, 1309 |
| BpmI | CTGGAG | 2 cut(s) | 996, 1683 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 661 |
| BpuEI | CTTGAG | 5 cut(s) | 32, 138, 435, 1161, 2028 |
| BpuMI | CCSGG | 1 cut(s) | 1200 |
| BsaAI | YACGTR | 1 cut(s) | 911 |
| BsaBI | GATNNNNATC | 2 cut(s) | 99, 806 |
| BsaJI | CCNNGG | 4 cut(s) | 865, 1087, 1414, 1687 |
| BsaWI | WCCGGW | 4 cut(s) | 1055, 1454, 1670, 1964 |
| Bse118I | RCCGGY | 2 cut(s) | 1454, 1964 |
| Bse1I | ACTGG | 5 cut(s) | 674, 1328, 1775, 1861, 1918 |
| Bse21I | CCTNAGG | 2 cut(s) | 234, 354 |
| Bse8I | GATNNNNATC | 2 cut(s) | 99, 806 |
| BseBI | CCWGG | 2 cut(s) | 1095, 1590 |
| BseDI | CCNNGG | 4 cut(s) | 865, 1087, 1414, 1687 |
| BseGI | GGATG | 7 cut(s) | 97, 388, 490, 784, 1046, 1138, 1614 |
| BseJI | GATNNNNATC | 2 cut(s) | 99, 806 |
| BseMII | CTCAG | 7 cut(s) | 134, 345, 512, 675, 705, 929, 2024 |
| BseNI | ACTGG | 5 cut(s) | 674, 1328, 1775, 1861, 1918 |
| BseSI | GKGCMC | 1 cut(s) | 1921 |
| BseYI | CCCAGC | 1 cut(s) | 1937 |
| BsgI | GTGCAG | 1 cut(s) | 750 |
| BshNI | GGYRCC | 1 cut(s) | 617 |
| BshTI | ACCGGT | 2 cut(s) | 1454, 1964 |
| BsiHKAI | GWGCWC | 4 cut(s) | 662, 910, 1315, 1921 |
| BsiSI | CCGG | 5 cut(s) | 1056, 1200, 1455, 1671, 1965 |
| BslFI | GGGAC | 4 cut(s) | 530, 1068, 1274, 1359 |
| BsmAI | GTCTC | 2 cut(s) | 581, 869 |
| BsmFI | GGGAC | 4 cut(s) | 530, 1068, 1274, 1359 |
| BsmI | GAATGC | 1 cut(s) | 1039 |
| Bsp1286I | GDGCHC | 4 cut(s) | 662, 910, 1315, 1921 |
| Bsp143I | GATC | 7 cut(s) | 43, 280, 325, 340, 652, 807, 2047 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 661 |
| Bsp19I | CCATGG | 1 cut(s) | 1414 |
| BspACI | CCGC | 3 cut(s) | 35, 1098, 1809 |
| BspCNI | CTCAG | 7 cut(s) | 133, 346, 511, 674, 706, 928, 2023 |
| BspLI | GGNNCC | 8 cut(s) | 231, 282, 619, 782, 809, 1262, 1375, 1734 |
| BspMAI | CTGCAG | 2 cut(s) | 1657, 1933 |
| BspMI | ACCTGC | 4 cut(s) | 772, 1378, 1541, 1858 |
| BspPI | GGATC | 6 cut(s) | 275, 288, 647, 802, 815, 2042 |
| BspT107I | GGYRCC | 1 cut(s) | 617 |
| BsrBI | CCGCTC | 1 cut(s) | 1811 |
| BsrFI | RCCGGY | 2 cut(s) | 1454, 1964 |
| BsrI | ACTGG | 5 cut(s) | 674, 1328, 1775, 1861, 1918 |
| BssAI | RCCGGY | 2 cut(s) | 1454, 1964 |
| BssECI | CCNNGG | 4 cut(s) | 865, 1087, 1414, 1687 |
| BssMI | GATC | 7 cut(s) | 43, 280, 325, 340, 652, 807, 2047 |
| BssSI | CACGAG | 2 cut(s) | 1119, 1158 |
| BssT1I | CCWWGG | 3 cut(s) | 1087, 1414, 1687 |
| Bst2BI | CACGAG | 2 cut(s) | 1119, 1158 |
| Bst2UI | CCWGG | 2 cut(s) | 1095, 1590 |
| Bst4CI | ACNGT | 8 cut(s) | 522, 597, 964, 1082, 1406, 1505, 1710, 1946 |
| Bst6I | CTCTTC | 1 cut(s) | 234 |
| BstBAI | YACGTR | 1 cut(s) | 911 |
| BstC8I | GCNNGC | 7 cut(s) | 700, 1074, 1324, 1653, 1890, 1926, 1995 |
| BstDEI | CTNAG | 9 cut(s) | 120, 234, 354, 498, 661, 714, 915, 1494, 2010 |
| BstDSI | CCRYGG | 1 cut(s) | 1414 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1236, 1530, 1686 |
| BstF5I | GGATG | 7 cut(s) | 97, 388, 490, 784, 1046, 1138, 1614 |
| BstH2I | RGCGCY | 1 cut(s) | 1323 |
| BstHHI | GCGC | 1 cut(s) | 1322 |
| BstKTI | GATC | 7 cut(s) | 46, 283, 328, 343, 655, 810, 2050 |
| BstMAI | GTCTC | 2 cut(s) | 581, 869 |
| BstMBI | GATC | 7 cut(s) | 43, 280, 325, 340, 652, 807, 2047 |
| BstNI | CCWGG | 2 cut(s) | 1095, 1590 |
| BstNSI | RCATGY | 3 cut(s) | 702, 935, 1436 |
| BstSCI | CCNGG | 3 cut(s) | 1093, 1198, 1588 |
| BstSFI | CTRYAG | 3 cut(s) | 1653, 1801, 1929 |
| BstSLI | GKGCMC | 1 cut(s) | 1921 |
| BstV2I | GAAGAC | 2 cut(s) | 186, 1309 |
| BstX2I | RGATCY | 3 cut(s) | 280, 807, 2047 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1110, 1160, 2024 |
| BstYI | RGATCY | 3 cut(s) | 280, 807, 2047 |
| Bsu36I | CCTNAGG | 2 cut(s) | 234, 354 |
| BsuI | GTATCC | 2 cut(s) | 1964, 2021 |
| BtgI | CCRYGG | 1 cut(s) | 1414 |
| BtrI | CACGTC | 1 cut(s) | 1761 |
| BtsCI | GGATG | 7 cut(s) | 97, 388, 490, 784, 1046, 1138, 1614 |
| BtsIMutI | CAGTG | 3 cut(s) | 681, 733, 1782 |
| BveI | ACCTGC | 4 cut(s) | 772, 1378, 1541, 1858 |
| Cac8I | GCNNGC | 7 cut(s) | 700, 1074, 1324, 1653, 1890, 1926, 1995 |
| CaiI | CAGNNNCTG | 3 cut(s) | 650, 746, 1937 |
| CfoI | GCGC | 1 cut(s) | 1322 |
| Cfr10I | RCCGGY | 2 cut(s) | 1454, 1964 |
| CseI | GACGC | 1 cut(s) | 1832 |
| CsiI | ACCWGGT | 1 cut(s) | 1588 |
| Csp6I | GTAC | 9 cut(s) | 257, 912, 1251, 1288, 1352, 1722, 1839, 1942, 2004 |
| CspAI | ACCGGT | 2 cut(s) | 1454, 1964 |
| CviAII | CATG | 9 cut(s) | 290, 699, 797, 932, 1009, 1130, 1415, 1433, 1729 |
| CviQI | GTAC | 9 cut(s) | 257, 912, 1251, 1288, 1352, 1722, 1839, 1942, 2004 |
| DdeI | CTNAG | 9 cut(s) | 120, 234, 354, 498, 661, 714, 915, 1494, 2010 |
| DpnI | GATC | 7 cut(s) | 45, 282, 327, 342, 654, 809, 2049 |
| DpnII | GATC | 7 cut(s) | 43, 280, 325, 340, 652, 807, 2047 |
| EaeI | YGGCCR | 1 cut(s) | 862 |
| Eam1104I | CTCTTC | 1 cut(s) | 234 |
| EarI | CTCTTC | 1 cut(s) | 234 |
| Ecl136II | GAGCTC | 2 cut(s) | 660, 1313 |
| Eco130I | CCWWGG | 3 cut(s) | 1087, 1414, 1687 |
| Eco147I | AGGCCT | 1 cut(s) | 1600 |
| Eco24I | GRGCYC | 2 cut(s) | 662, 1315 |
| Eco47I | GGWCC | 8 cut(s) | 1100, 1124, 1163, 1261, 1283, 1373, 1619, 1859 |
| Eco47III | AGCGCT | 1 cut(s) | 1321 |
| Eco53kI | GAGCTC | 2 cut(s) | 660, 1313 |
| Eco57I | CTGAAG | 3 cut(s) | 209, 587, 768 |
| Eco81I | CCTNAGG | 2 cut(s) | 234, 354 |
| EcoICRI | GAGCTC | 2 cut(s) | 660, 1313 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1236, 1530, 1686 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1124, 1619 |
| EcoRII | CCWGG | 2 cut(s) | 1093, 1588 |
| EcoT14I | CCWWGG | 3 cut(s) | 1087, 1414, 1687 |
| EcoT22I | ATGCAT | 1 cut(s) | 704 |
| EcoT38I | GRGCYC | 2 cut(s) | 662, 1315 |
| ErhI | CCWWGG | 3 cut(s) | 1087, 1414, 1687 |
| FaeI | CATG | 9 cut(s) | 293, 702, 800, 935, 1012, 1133, 1418, 1436, 1732 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 57, 89, 207, 239 |
| FaqI | GGGAC | 4 cut(s) | 530, 1068, 1274, 1359 |
| FatI | CATG | 9 cut(s) | 289, 698, 796, 931, 1008, 1129, 1414, 1432, 1728 |
| FauNDI | CATATG | 2 cut(s) | 1227, 1714 |
| FbaI | TGATCA | 1 cut(s) | 340 |
| FblI | GTMKAC | 1 cut(s) | 524 |
| FokI | GGATG | 7 cut(s) | 104, 395, 497, 771, 1033, 1125, 1621 |
| FriOI | GRGCYC | 2 cut(s) | 662, 1315 |
| FspBI | CTAG | 4 cut(s) | 140, 770, 777, 1236 |
| GlaI | GCGC | 1 cut(s) | 1321 |
| GsaI | CCCAGC | 1 cut(s) | 1941 |
| GsuI | CTGGAG | 2 cut(s) | 996, 1683 |
| HaeII | RGCGCY | 1 cut(s) | 1323 |
| HapII | CCGG | 5 cut(s) | 1056, 1200, 1455, 1671, 1965 |
| HgaI | GACGC | 1 cut(s) | 1832 |
| HhaI | GCGC | 1 cut(s) | 1322 |
| Hin1II | CATG | 9 cut(s) | 293, 702, 800, 935, 1012, 1133, 1418, 1436, 1732 |
| Hin6I | GCGC | 1 cut(s) | 1320 |
| HinP1I | GCGC | 1 cut(s) | 1320 |
| HincII | GTYRAC | 1 cut(s) | 525 |
| HindII | GTYRAC | 1 cut(s) | 525 |
| HindIII | AAGCTT | 1 cut(s) | 719 |
| HinfI | GANTC | 5 cut(s) | 113, 244, 251, 299, 641 |
| HpaII | CCGG | 5 cut(s) | 1056, 1200, 1455, 1671, 1965 |
| HphI | GGTGA | 6 cut(s) | 407, 421, 500, 753, 953, 1685 |
| Hpy166II | GTNNAC | 8 cut(s) | 398, 525, 761, 1103, 1118, 1163, 1841, 1919 |
| Hpy8I | GTNNAC | 8 cut(s) | 398, 525, 761, 1103, 1118, 1163, 1841, 1919 |
| Hpy99I | CGWCG | 1 cut(s) | 65 |
| HpyAV | CCTTC | 7 cut(s) | 400, 496, 798, 932, 946, 1350, 1806 |
| HpyCH4III | ACNGT | 8 cut(s) | 522, 597, 964, 1082, 1406, 1505, 1710, 1946 |
| HpyCH4IV | ACGT | 3 cut(s) | 910, 1481, 1760 |
| HpyF3I | CTNAG | 9 cut(s) | 120, 234, 354, 498, 661, 714, 915, 1494, 2010 |
| HpySE526I | ACGT | 3 cut(s) | 910, 1481, 1760 |
| Hsp92II | CATG | 9 cut(s) | 293, 702, 800, 935, 1012, 1133, 1418, 1436, 1732 |
| HspAI | GCGC | 1 cut(s) | 1320 |
| Ksp22I | TGATCA | 1 cut(s) | 340 |
| Kzo9I | GATC | 7 cut(s) | 43, 280, 325, 340, 652, 807, 2047 |
| LmnI | GCTCC | 7 cut(s) | 905, 1138, 1310, 1444, 1738, 1816, 1963 |
| LweI | GCATC | 3 cut(s) | 975, 1506, 1599 |
| MabI | ACCWGGT | 1 cut(s) | 1588 |
| MaeI | CTAG | 4 cut(s) | 140, 770, 777, 1236 |
| MaeII | ACGT | 3 cut(s) | 910, 1481, 1760 |
| MaeIII | GTNAC | 1 cut(s) | 1400 |
| MalI | GATC | 7 cut(s) | 45, 282, 327, 342, 654, 809, 2049 |
| MbiI | CCGCTC | 1 cut(s) | 1811 |
| MboI | GATC | 7 cut(s) | 43, 280, 325, 340, 652, 807, 2047 |
| MflI | RGATCY | 3 cut(s) | 280, 807, 2047 |
| MhlI | GDGCHC | 4 cut(s) | 662, 910, 1315, 1921 |
| MluCI | AATT | 4 cut(s) | 630, 684, 1192, 1291 |
| MlyI | GAGTC | 1 cut(s) | 308 |
| MmeI | TCCRAC | 2 cut(s) | 1985, 2006 |
| Mph1103I | ATGCAT | 1 cut(s) | 704 |
| MroXI | GAANNNNTTC | 1 cut(s) | 222 |
| MseI | TTAA | 6 cut(s) | 75, 348, 609, 668, 828, 920 |
| MslI | CAYNNNNRTG | 4 cut(s) | 294, 1108, 1143, 1158 |
| MspA1I | CMGCKG | 1 cut(s) | 1937 |
| MspI | CCGG | 5 cut(s) | 1056, 1200, 1455, 1671, 1965 |
| MspR9I | CCNGG | 3 cut(s) | 1095, 1200, 1590 |
| Mva1269I | GAATGC | 1 cut(s) | 1039 |
| MvaI | CCWGG | 2 cut(s) | 1095, 1590 |
| NciI | CCSGG | 1 cut(s) | 1200 |
| NcoI | CCATGG | 1 cut(s) | 1414 |
| NdeI | CATATG | 2 cut(s) | 1227, 1714 |
| NdeII | GATC | 7 cut(s) | 43, 280, 325, 340, 652, 807, 2047 |
| NlaIII | CATG | 9 cut(s) | 293, 702, 800, 935, 1012, 1133, 1418, 1436, 1732 |
| NlaIV | GGNNCC | 8 cut(s) | 231, 282, 619, 782, 809, 1262, 1375, 1734 |
| NmeAIII | GCCGAG | 1 cut(s) | 890 |
| NsiI | ATGCAT | 1 cut(s) | 704 |
| NspI | RCATGY | 3 cut(s) | 702, 935, 1436 |
| OliI | CACNNNNGTG | 1 cut(s) | 1158 |
| PaeI | GCATGC | 1 cut(s) | 702 |
| PaqCI | CACCTGC | 3 cut(s) | 772, 1541, 1858 |
| PceI | AGGCCT | 1 cut(s) | 1600 |
| PctI | GAATGC | 1 cut(s) | 1039 |
| PdmI | GAANNNNTTC | 1 cut(s) | 222 |
| PfeI | GAWTC | 4 cut(s) | 113, 244, 251, 641 |
| PflFI | GACNNNGTC | 1 cut(s) | 898 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1427, 1529, 1553, 1967 |
| PinAI | ACCGGT | 2 cut(s) | 1454, 1964 |
| PleI | GAGTC | 1 cut(s) | 307 |
| PpsI | GAGTC | 1 cut(s) | 307 |
| Ppu21I | YACGTR | 1 cut(s) | 911 |
| PpuMI | RGGWCCY | 2 cut(s) | 1124, 1619 |
| Psp124BI | GAGCTC | 2 cut(s) | 662, 1315 |
| Psp5II | RGGWCCY | 2 cut(s) | 1124, 1619 |
| Psp6I | CCWGG | 2 cut(s) | 1093, 1588 |
| PspFI | CCCAGC | 1 cut(s) | 1937 |
| PspGI | CCWGG | 2 cut(s) | 1093, 1588 |
| PspN4I | GGNNCC | 8 cut(s) | 231, 282, 619, 782, 809, 1262, 1375, 1734 |
| PspPPI | RGGWCCY | 2 cut(s) | 1124, 1619 |
| PstI | CTGCAG | 2 cut(s) | 1657, 1933 |
| PstNI | CAGNNNCTG | 3 cut(s) | 650, 746, 1937 |
| PsuI | RGATCY | 3 cut(s) | 280, 807, 2047 |
| PsyI | GACNNNGTC | 1 cut(s) | 898 |
| PvuII | CAGCTG | 1 cut(s) | 1937 |
| RsaI | GTAC | 9 cut(s) | 258, 913, 1252, 1289, 1353, 1723, 1840, 1943, 2005 |
| RsaNI | GTAC | 9 cut(s) | 257, 912, 1251, 1288, 1352, 1722, 1839, 1942, 2004 |
| RseI | CAYNNNNRTG | 4 cut(s) | 294, 1108, 1143, 1158 |
| SacI | GAGCTC | 2 cut(s) | 662, 1315 |
| SalI | GTCGAC | 1 cut(s) | 523 |
| SaqAI | TTAA | 6 cut(s) | 75, 348, 609, 668, 828, 920 |
| Sau3AI | GATC | 7 cut(s) | 43, 280, 325, 340, 652, 807, 2047 |
| ScaI | AGTACT | 1 cut(s) | 1723 |
| SchI | GAGTC | 1 cut(s) | 308 |
| ScrFI | CCNGG | 3 cut(s) | 1095, 1200, 1590 |
| SduI | GDGCHC | 4 cut(s) | 662, 910, 1315, 1921 |
| SexAI | ACCWGGT | 1 cut(s) | 1588 |
| SfaNI | GCATC | 3 cut(s) | 975, 1506, 1599 |
| SfcI | CTRYAG | 3 cut(s) | 1653, 1801, 1929 |
| SinI | GGWCC | 8 cut(s) | 1100, 1124, 1163, 1261, 1283, 1373, 1619, 1859 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 294, 1108, 1143, 1158 |
| SmlI | CTYRAG | 5 cut(s) | 47, 153, 450, 1176, 2043 |
| SmoI | CTYRAG | 5 cut(s) | 47, 153, 450, 1176, 2043 |
| SphI | GCATGC | 1 cut(s) | 702 |
| Sse9I | AATT | 4 cut(s) | 630, 684, 1192, 1291 |
| SseBI | AGGCCT | 1 cut(s) | 1600 |
| SsiI | CCGC | 3 cut(s) | 35, 1098, 1809 |
| SspMI | CTAG | 4 cut(s) | 140, 770, 777, 1236 |
| SstI | GAGCTC | 2 cut(s) | 662, 1315 |
| StuI | AGGCCT | 1 cut(s) | 1600 |
| StyD4I | CCNGG | 3 cut(s) | 1093, 1198, 1588 |
| StyI | CCWWGG | 3 cut(s) | 1087, 1414, 1687 |
| TaaI | ACNGT | 8 cut(s) | 522, 597, 964, 1082, 1406, 1505, 1710, 1946 |
| TaiI | ACGT | 3 cut(s) | 913, 1484, 1763 |
| TaqI | TCGA | 3 cut(s) | 42, 60, 524 |
| TasI | AATT | 4 cut(s) | 630, 684, 1192, 1291 |
| TatI | WGTACW | 1 cut(s) | 1721 |
| TauI | GCSGC | 1 cut(s) | 37 |
| TfiI | GAWTC | 4 cut(s) | 113, 244, 251, 641 |
| Tru1I | TTAA | 6 cut(s) | 75, 348, 609, 668, 828, 920 |
| Tru9I | TTAA | 6 cut(s) | 75, 348, 609, 668, 828, 920 |
| TscAI | CASTG | 3 cut(s) | 681, 733, 1782 |
| TspDTI | ATGAA | 7 cut(s) | 162, 278, 1040, 1161, 1173, 1500, 1527 |
| TspGWI | ACGGA | 4 cut(s) | 20, 956, 1263, 1275 |
| TspRI | CASTG | 3 cut(s) | 681, 733, 1782 |
| Tth111I | GACNNNGTC | 1 cut(s) | 898 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1427, 1529, 1553, 1967 |
| VneI | GTGCAC | 1 cut(s) | 1917 |
| VpaK11BI | GGWCC | 8 cut(s) | 1100, 1124, 1163, 1261, 1283, 1373, 1619, 1859 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1236, 1530, 1686 |
| XapI | RAATTY | 1 cut(s) | 630 |
| XceI | RCATGY | 3 cut(s) | 702, 935, 1436 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1634 |
| XmiI | GTMKAC | 1 cut(s) | 524 |
| XmnI | GAANNNNTTC | 1 cut(s) | 222 |
| XspI | CTAG | 4 cut(s) | 140, 770, 777, 1236 |
| ZrmI | AGTACT | 1 cut(s) | 1723 |
| Zsp2I | ATGCAT | 1 cut(s) | 704 |