Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008397

Physical Location & Seq

Genomic Coordinates Forward (+)

9522661 .. 9528007

Gene Structure 5347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1108100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGGCGGAGGAGGAGGTTGTGGCGGCCGCGGAAAGCCCTGGGCCGTCGGATCACAAGCGGAAGCTCGAGGATTTGGAGCCTAAAGCAGCACCGGAAATACTTGAGCTCGATTCCGACGGGCAGGATGATGCGAATGCGGAGCCTGGTTGTGCTGAAGAAGTTGATGTGCGGCCTTCGGATGAATCGGAGGCGAAGAGGCCCCGCCTTGATGACAAGCCCCACGGAATAGCTAGTGAGAATGGCCACCAAGAGGAGGAGGTAGATGAGCCTGAAAAAGAGAATGAGGATCAACCAAATGTTGATAGCGATGACCCAGAGGTCCCCCAGCCCACATCTGTGGAAGTTACTGAAGCAGTGACCGACGAGCAAAAGTCTGAAGTTAACGAACAACATAATGACATGAATGGTGAGCCGAGTGACACCCAAAAGCCTGCTGAGAATTCTGTGGCAGAAAAAGCTGAGGAACCCCCTCAAGGGGAGTGTCAAGCACACTACGCAGAGGAACCTCAGCAAGGTGGAGCTTACTTTGTGCAACAAGAGCAGCCTTCTGCAAATGAGATTTTGACACACAAAATGGAGGTTCCTAATAATAAGGTTGGGGTTTTAATTGGCAAGTCGGGGGATACTATACGGTACTTGCAATACAATTCTGGAGCAAAGATTCAAATCACAAGGGATTCCGATGCAGACCCATATTCTGCAACCAGGCCTGTGGAGATAATAGGAACTTTGGATAGTATAAGCAAGGCAGAGAAACTGATTAATGCTGTTATTGCAGAGGCTGATGCAGGGGGTTCTCCTTCTTTGGTTGCTAGAGGTGTTGCTACTGCACAGGCTGTTGCCGCTGCAGAACAAATTCAGATTCAAGTTCCGAATGAGAAGGTCGGTTTGATAATTGGCAGAGGTGGGGAGACCATTAAAGGTCTGCAGACCACATCAGGGGCACGCATCCAGTTGATACCCCAACATCTTCCGGAAGGGGATGAATCTAAAGAAAGGACTGTCCGAGTTACTGGTGATAAGAAGCAGATTGAAGTTGCTAAAGAATTGATAAAGGAGGTTATGAATCAGAATGTGAGGCCATCACCTCTCTCCAGTGGTTTTAATCATCAGGGTTATCGTCCCCATGGACCAGGTGGTCCTCAATGGGGTCCGCGAGGACCTCATCTACCTCAGCCATATTCGTATGATTATCCACAACGAGGACCTTATCCATCCCATAATCCTCAGTACCCTCCTGCGTATGGGGGTTATCCTCAACATATGGGTCCAAGAAGTGGCTATGGTTCTGGTTGGGGGCAAAGGCCACCTTCCAGCATGCCACATGGTGGTGGATATGATTACTATGGTGGACAAGGAGCAGATGCCCCAGTATCTGCCCAACGTTCTGCTCCCGCTCCTTCTCATGCTCCTGGCCCATCTCCTAACCCTGCAATGGGTGCACCCTCCCAAGCAAATTACAACTATGGTCATCCGGCAACTTATTCCCAGGCTGCACCTCCTCAGCATAACTATGGGCATGGATACGAAGAACCAAAATATGATAATCATGCTCCAATGCAGTATCCCTACGGAGGACAAGCACCTTCTCAGCAATATCCACAAACTGGAGCTCATCCAGGTTATGGTCCACAGCAGACTTACAGCAAGCCACCACCATATGGCATGCCATCACAAGCTCCAAATCCTCAGTCTTATGGCCCTCCTAGGGCTAGTCAACCAGGAGAAGCGGTTTATCAGGGTTCTGCACAACCTCATTCATATGGTCCAAATGTCCCGGCTCAACAGCCATATCCATATGCATCCAGTGGACCTGCTCAGCAGACCTATCCTGCGTATGGTTCTGCACCAGCTGCTGATGGGTACAGTCAGCCACCACCCGCTTCTGGCTCGGGTTATCCACAACAAGGAAGACAACCTGTTAGTTATGGCCAGCCTGGTGCACAGCAGGCACCCGGCTATGGACAGGCAGCTCCCACTGCAGGGTACGCACAATACCCATCTTCTCAGCAAGGTTACGCTGAGCAGGCTGCTCCAAATGCAGCAGGTTATGGGTACCAGGGGTCTCAAGACCCTGGATATGGAGGAGCCTCTGCAGCAGCATATGGTGCACCAGCAGCTGCGCAGCCAGGTTATGCACAACCAGCAGCTCAACAAACTTATGATCAGTCGATCCCCCAGTCTGCTGGTTATGGAGCTGCACAACCAGCTGCATCAGCTGGTTATGGAAAGACGGTGTCCCCCCAGCCTGGTTATCCCCAGTATGACTCGAGCCAAATGTATGCTGCTGCACCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

767

Amino Acids

80.92

Weight (kDa)

4.79

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	189 - 255	4e-16	KH domain
KH_1	PF00013	286 - 353	6.1e-19	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33680 AT4G10070
fragaria_vesca	FvH4_2g35080 FvH4_2g35080 FvH4_2g35080
malus_domestica	MD08G1108100.v1.1 MD15G1088600.v1.1 MD15G1088800.v1.1
prunus_persica	Prupe.1G442700_v2.0.a1
pyrus_communis	pycom08g09010 pycom15g08310
rosa_chinensis	RchiOBHm_Chr6g0306891
rosa_laevigata	RLG00000010757
rosa_multiflora	Rmu_co8448611.1_g000001 Rmu_co8474845.1_g000001 Rmu_sc0018770.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161380
rosa_rugosa	Rorug06G0354100
rosa_samantha	Rh6AG465700 Rh6BG435100 Rh6CG480200 Rh6DG467100
rosa_wichuraiana	Rw6G040590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	317, 1137
Acc16I	TGCGCA	1 cut(s)	2124
Acc36I	ACCTGC	2 cut(s)	1822, 2036
Acc65I	GGTACC	1 cut(s)	2055
AccB1I	GGYRCC	2 cut(s)	1951, 2055
AccB7I	CCANNNNNTGG	5 cut(s)	1277, 1328, 1607, 1625, 1661
AccBSI	CCGCTC	1 cut(s)	1397
AccII	CGCG	2 cut(s)	29, 1156
AccIII	TCCGGA	1 cut(s)	973
AclI	AACGTT	1 cut(s)	1384
AclWI	GGATC	3 cut(s)	57, 294, 2167
AcoI	YGGCCR	3 cut(s)	24, 241, 1930
AcsI	RAATTY	2 cut(s)	439, 855
AcuI	CTGAAG	3 cut(s)	174, 369, 396
AdeI	CACNNNGTG	1 cut(s)	1328
AfaI	GTAC	5 cut(s)	635, 1232, 1865, 1988, 2057
AgsI	TTSAA	3 cut(s)	665, 866, 1034
AleI	CACNNNNGTG	1 cut(s)	335
Alw21I	GWGCWC	5 cut(s)	108, 1444, 1615, 1945, 2113
Alw26I	GTCTC	2 cut(s)	905, 2070
Alw44I	GTGCAC	3 cut(s)	1440, 1941, 2109
AlwI	GGATC	3 cut(s)	57, 294, 2167
AlwNI	CAGNNNCTG	4 cut(s)	782, 1376, 1856, 2120
Ama87I	CYCGRG	3 cut(s)	65, 1891, 2269
Aor13HI	TCCGGA	1 cut(s)	973
ApaLI	GTGCAC	3 cut(s)	1440, 1941, 2109
ApoI	RAATTY	2 cut(s)	439, 855
ArsI	GACNNNNNNTTYG	2 cut(s)	1676, 1708
AseI	ATTAAT	1 cut(s)	762
Asp700I	GAANNNNTTC	1 cut(s)	855
Asp718I	GGTACC	1 cut(s)	2055
AspA2I	CCTAGG	1 cut(s)	1706
AspLEI	GCGC	1 cut(s)	2125
AsuC2I	CCSGG	2 cut(s)	1778, 1956
AsuHPI	GGTGA	3 cut(s)	419, 1028, 1077
AvaI	CYCGRG	3 cut(s)	65, 1891, 2269
AvrII	CCTAGG	1 cut(s)	1706
BaeGI	GKGCMC	4 cut(s)	946, 1444, 1945, 2113
BalI	TGGCCA	2 cut(s)	243, 1932
BanI	GGYRCC	2 cut(s)	1951, 2055
BanII	GRGCYC	2 cut(s)	108, 1615
BbsI	GAAGAC	1 cut(s)	1918
Bbv12I	GWGCWC	5 cut(s)	108, 1444, 1615, 1945, 2113
BbvCI	CCTCAGC	4 cut(s)	459, 507, 1173, 1503
BccI	CCATC	6 cut(s)	1090, 1222, 1426, 1678, 1853, 2008
BceAI	ACGGC	1 cut(s)	28
BciVI	GTATCC	3 cut(s)	616, 1517, 1575
BclI	TGATCA	1 cut(s)	2164
BcnI	CCSGG	2 cut(s)	1778, 1956
BcoDI	GTCTC	2 cut(s)	905, 2070
BfaI	CTAG	4 cut(s)	231, 813, 1707, 1713
BfmI	CTRYAG	4 cut(s)	846, 926, 1980, 2094
BfuAI	ACCTGC	2 cut(s)	1822, 2036
BfuI	GTATCC	3 cut(s)	616, 1517, 1575
BlnI	CCTAGG	1 cut(s)	1706
BlpI	GCTNAGC	2 cut(s)	1818, 2022
BmeT110I	CYCGRG	3 cut(s)	65, 1891, 2269
BmrI	ACTGGG	3 cut(s)	1364, 2173, 2254
BmsI	GCATC	7 cut(s)	118, 673, 775, 957, 1354, 1811, 2222
BmuI	ACTGGG	3 cut(s)	1364, 2173, 2254
BpiI	GAAGAC	1 cut(s)	1918
BpmI	CTGGAG	3 cut(s)	672, 1078, 1629
Bpu10I	CCTNAGC	4 cut(s)	459, 507, 1173, 1503
Bpu1102I	GCTNAGC	2 cut(s)	1818, 2022
BpuEI	CTTGAG	3 cut(s)	122, 456, 2052
BpuMI	CCSGG	2 cut(s)	1778, 1956
BsaBI	GATNNNNATC	1 cut(s)	665
BsaI	GGTCTC	2 cut(s)	905, 2070
BsaJI	CCNNGG	9 cut(s)	27, 37, 38, 220, 1126, 1488, 1706, 2059, 2074
BsaWI	WCCGGW	2 cut(s)	91, 973
BsaXI	ACNNNNNCTCC	2 cut(s)	1716, 1746
Bse1I	ACTGG	8 cut(s)	952, 1018, 1095, 1370, 1612, 1806, 2179, 2260
Bse3DI	GCAATG	1 cut(s)	1440
Bse8I	GATNNNNATC	1 cut(s)	665
BseAI	TCCGGA	1 cut(s)	973
BseDI	CCNNGG	9 cut(s)	27, 37, 38, 220, 1126, 1488, 1706, 2059, 2074
BseGI	GGATG	8 cut(s)	130, 184, 948, 988, 1214, 1471, 1615, 1802
BseJI	GATNNNNATC	1 cut(s)	665
BseMI	GCAATG	1 cut(s)	1440
BseNI	ACTGG	8 cut(s)	952, 1018, 1095, 1370, 1612, 1806, 2179, 2260
BseRI	GAGGAG	6 cut(s)	23, 26, 266, 269, 1491, 2100
BseSI	GKGCMC	4 cut(s)	946, 1444, 1945, 2113
BseX3I	CGGCCG	1 cut(s)	24
BseYI	CCCAGC	2 cut(s)	324, 2244
BsgI	GTGCAG	6 cut(s)	813, 1479, 1731, 1830, 2184, 2274
Bsh1236I	CGCG	2 cut(s)	29, 1156
Bsh1285I	CGRYCG	1 cut(s)	27
BshNI	GGYRCC	2 cut(s)	1951, 2055
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	5 cut(s)	108, 1444, 1615, 1945, 2113
BsiHKCI	CYCGRG	3 cut(s)	65, 1891, 2269
BsiSI	CCGG	5 cut(s)	92, 974, 1475, 1778, 1956
BslFI	GGGAC	4 cut(s)	305, 1107, 1760, 2224
BsmAI	GTCTC	2 cut(s)	905, 2070
BsmFI	GGGAC	4 cut(s)	305, 1107, 1760, 2224
BsmI	GAATGC	1 cut(s)	139
Bso31I	GGTCTC	2 cut(s)	905, 2070
BsoBI	CYCGRG	3 cut(s)	65, 1891, 2269
Bsp1286I	GDGCHC	6 cut(s)	108, 946, 1444, 1615, 1945, 2113
Bsp13I	TCCGGA	1 cut(s)	973
Bsp143I	GATC	4 cut(s)	49, 286, 2164, 2172
Bsp1720I	GCTNAGC	2 cut(s)	1818, 2022
Bsp19I	CCATGG	1 cut(s)	1126
BspEI	TCCGGA	1 cut(s)	973
BspFNI	CGCG	2 cut(s)	29, 1156
BspMAI	CTGCAG	4 cut(s)	850, 930, 1984, 2098
BspMI	ACCTGC	2 cut(s)	1822, 2036
BspPI	GGATC	3 cut(s)	57, 294, 2167
BspT107I	GGYRCC	2 cut(s)	1951, 2055
BspTNI	GGTCTC	2 cut(s)	905, 2070
BsrBI	CCGCTC	1 cut(s)	1397
BsrDI	GCAATG	1 cut(s)	1440
BsrI	ACTGG	8 cut(s)	952, 1018, 1095, 1370, 1612, 1806, 2179, 2260
BssECI	CCNNGG	9 cut(s)	27, 37, 38, 220, 1126, 1488, 1706, 2059, 2074
BssMI	GATC	4 cut(s)	49, 286, 2164, 2172
BssT1I	CCWWGG	2 cut(s)	1126, 1706
Bst4CI	ACNGT	4 cut(s)	633, 1003, 1868, 2236
Bst6I	CTCTTC	1 cut(s)	188
BstAPI	GCANNNNNTGC	3 cut(s)	1439, 1853, 2108
BstC8I	GCNNGC	8 cut(s)	432, 946, 1319, 1649, 1667, 1934, 1950, 2028
BstDSI	CCRYGG	3 cut(s)	27, 220, 1126
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	8 cut(s)	130, 184, 948, 988, 1214, 1471, 1615, 1802
BstFNI	CGCG	2 cut(s)	29, 1156
BstHHI	GCGC	1 cut(s)	2125
BstKTI	GATC	4 cut(s)	52, 289, 2167, 2175
BstMAI	GTCTC	2 cut(s)	905, 2070
BstMBI	GATC	4 cut(s)	49, 286, 2164, 2172
BstMCI	CGRYCG	1 cut(s)	27
BstNSI	RCATGY	2 cut(s)	1321, 1669
BstSFI	CTRYAG	4 cut(s)	846, 926, 1980, 2094
BstSLI	GKGCMC	4 cut(s)	946, 1444, 1945, 2113
BstUI	CGCG	2 cut(s)	29, 1156
BstV2I	GAAGAC	1 cut(s)	1918
BstXI	CCANNNNNNTGG	3 cut(s)	337, 712, 2186
BstZI	CGGCCG	1 cut(s)	24
BsuI	GTATCC	3 cut(s)	616, 1517, 1575
BtgI	CCRYGG	3 cut(s)	27, 220, 1126
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	8 cut(s)	130, 184, 948, 988, 1214, 1471, 1615, 1802
BtsI	GCAGTG	2 cut(s)	360, 1977
BtsIMutI	CAGTG	4 cut(s)	360, 1102, 1813, 1977
BveI	ACCTGC	2 cut(s)	1822, 2036
Cac8I	GCNNGC	8 cut(s)	432, 946, 1319, 1649, 1667, 1934, 1950, 2028
CaiI	CAGNNNCTG	4 cut(s)	782, 1376, 1856, 2120
CciNI	GCGGCCGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	2125
Cfr42I	CCGCGG	1 cut(s)	30
CsiI	ACCWGGT	1 cut(s)	1132
Csp6I	GTAC	5 cut(s)	634, 1231, 1864, 1987, 2056
CviAII	CATG	8 cut(s)	400, 1127, 1318, 1325, 1406, 1520, 1550, 1666
CviQI	GTAC	5 cut(s)	634, 1231, 1864, 1987, 2056
DpnI	GATC	4 cut(s)	51, 288, 2166, 2174
DpnII	GATC	4 cut(s)	49, 286, 2164, 2172
DraIII	CACNNNGTG	1 cut(s)	1328
DrdI	GACNNNNNNGTC	2 cut(s)	317, 1137
DseDI	GACNNNNNNGTC	2 cut(s)	317, 1137
EaeI	YGGCCR	3 cut(s)	24, 241, 1930
EagI	CGGCCG	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	106, 1613
EclXI	CGGCCG	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	1126, 1706
Eco147I	AGGCCT	1 cut(s)	709
Eco24I	GRGCYC	2 cut(s)	108, 1615
Eco31I	GGTCTC	2 cut(s)	905, 2070
Eco52I	CGGCCG	1 cut(s)	24
Eco53kI	GAGCTC	2 cut(s)	106, 1613
Eco57I	CTGAAG	3 cut(s)	174, 369, 396
Eco88I	CYCGRG	3 cut(s)	65, 1891, 2269
EcoICRI	GAGCTC	2 cut(s)	106, 1613
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	4 cut(s)	198, 319, 1160, 1205
EcoRI	GAATTC	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	1126, 1706
EcoT22I	ATGCAT	1 cut(s)	1804
EcoT38I	GRGCYC	2 cut(s)	108, 1615
ErhI	CCWWGG	2 cut(s)	1126, 1706
FaeI	CATG	8 cut(s)	403, 1130, 1321, 1328, 1409, 1523, 1553, 1669
FalI	AAGNNNNNCTT	2 cut(s)	1294, 1326
FaqI	GGGAC	4 cut(s)	305, 1107, 1760, 2224
FatI	CATG	8 cut(s)	399, 1126, 1317, 1324, 1405, 1519, 1549, 1665
FauI	CCCGC	3 cut(s)	209, 1402, 1888
FauNDI	CATATG	5 cut(s)	1263, 1660, 1762, 1798, 2104
FbaI	TGATCA	1 cut(s)	2164
FokI	GGATG	8 cut(s)	137, 191, 935, 995, 1201, 1458, 1602, 1789
FriOI	GRGCYC	2 cut(s)	108, 1615
FspBI	CTAG	4 cut(s)	231, 813, 1707, 1713
FspI	TGCGCA	1 cut(s)	2124
GlaI	GCGC	1 cut(s)	2124
GsaI	CCCAGC	2 cut(s)	328, 2248
GsuI	CTGGAG	3 cut(s)	672, 1078, 1629
HapII	CCGG	5 cut(s)	92, 974, 1475, 1778, 1956
HhaI	GCGC	1 cut(s)	2125
Hin1II	CATG	8 cut(s)	403, 1130, 1321, 1328, 1409, 1523, 1553, 1669
Hin6I	GCGC	1 cut(s)	2123
HinP1I	GCGC	1 cut(s)	2123
HincII	GTYRAC	2 cut(s)	382, 1718
HindII	GTYRAC	2 cut(s)	382, 1718
HinfI	GANTC	8 cut(s)	110, 182, 661, 677, 862, 986, 1066, 2267
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	5 cut(s)	92, 974, 1475, 1778, 1956
HphI	GGTGA	3 cut(s)	419, 1028, 1077
Hpy166II	GTNNAC	8 cut(s)	382, 1352, 1442, 1631, 1718, 1811, 1943, 2111
Hpy188III	TCNNGA	3 cut(s)	651, 974, 2069
Hpy8I	GTNNAC	8 cut(s)	382, 1352, 1442, 1631, 1718, 1811, 1943, 2111
Hpy99I	CGWCG	3 cut(s)	49, 119, 365
HpyAV	CCTTC	8 cut(s)	183, 555, 810, 874, 971, 1320, 1410, 1596
HpyCH4III	ACNGT	4 cut(s)	633, 1003, 1868, 2236
HpyCH4IV	ACGT	1 cut(s)	1384
HpySE526I	ACGT	1 cut(s)	1384
Hsp92II	CATG	8 cut(s)	403, 1130, 1321, 1328, 1409, 1523, 1553, 1669
HspAI	GCGC	1 cut(s)	2123
Kpn2I	TCCGGA	1 cut(s)	973
KpnI	GGTACC	1 cut(s)	2059
Ksp22I	TGATCA	1 cut(s)	2164
KspAI	GTTAAC	1 cut(s)	382
KspI	CCGCGG	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	49, 286, 2164, 2172
LweI	GCATC	7 cut(s)	118, 673, 775, 957, 1354, 1811, 2222
MabI	ACCWGGT	1 cut(s)	1132
MaeI	CTAG	4 cut(s)	231, 813, 1707, 1713
MaeII	ACGT	1 cut(s)	1384
MaeIII	GTNAC	5 cut(s)	343, 355, 416, 1009, 2015
MalI	GATC	4 cut(s)	51, 288, 2166, 2174
MbiI	CCGCTC	1 cut(s)	1397
MboI	GATC	4 cut(s)	49, 286, 2164, 2172
MboII	GAAGA	6 cut(s)	167, 205, 962, 1541, 1923, 1995
MhlI	GDGCHC	6 cut(s)	108, 946, 1444, 1615, 1945, 2113
MlsI	TGGCCA	2 cut(s)	243, 1932
MluCI	AATT	7 cut(s)	439, 606, 646, 855, 894, 1046, 1456
MluNI	TGGCCA	2 cut(s)	243, 1932
MlyI	GAGTC	1 cut(s)	2261
MmeI	TCCRAC	2 cut(s)	27, 138
Mox20I	TGGCCA	2 cut(s)	243, 1932
Mph1103I	ATGCAT	1 cut(s)	1804
MroI	TCCGGA	1 cut(s)	973
MroXI	GAANNNNTTC	1 cut(s)	855
MscI	TGGCCA	2 cut(s)	243, 1932
MseI	TTAA	5 cut(s)	381, 605, 762, 918, 1104
MslI	CAYNNNNRTG	4 cut(s)	335, 1329, 1512, 1761
Msp20I	TGGCCA	2 cut(s)	243, 1932
MspA1I	CMGCKG	6 cut(s)	29, 845, 1853, 2120, 2210, 2219
MspI	CCGG	5 cut(s)	92, 974, 1475, 1778, 1956
Mva1269I	GAATGC	1 cut(s)	139
MvnI	CGCG	2 cut(s)	29, 1156
NciI	CCSGG	2 cut(s)	1778, 1956
NcoI	CCATGG	1 cut(s)	1126
NdeI	CATATG	5 cut(s)	1263, 1660, 1762, 1798, 2104
NdeII	GATC	4 cut(s)	49, 286, 2164, 2172
NlaIII	CATG	8 cut(s)	403, 1130, 1321, 1328, 1409, 1523, 1553, 1669
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	2 cut(s)	355, 416
NotI	GCGGCCGC	1 cut(s)	24
NsbI	TGCGCA	1 cut(s)	2124
NsiI	ATGCAT	1 cut(s)	1804
NspI	RCATGY	2 cut(s)	1321, 1669
OliI	CACNNNNGTG	1 cut(s)	335
PaeI	GCATGC	2 cut(s)	1321, 1669
PaeR7I	CTCGAG	2 cut(s)	65, 2269
PasI	CCCWGGG	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	709
PctI	GAATGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	7 cut(s)	110, 182, 661, 677, 862, 986, 1066
PflFI	GACNNNGTC	1 cut(s)	2236
PflMI	CCANNNNNTGG	5 cut(s)	1277, 1328, 1607, 1625, 1661
PleI	GAGTC	1 cut(s)	2261
PpsI	GAGTC	1 cut(s)	2261
PpuMI	RGGWCCY	3 cut(s)	319, 1160, 1205
PshBI	ATTAAT	1 cut(s)	762
Psp124BI	GAGCTC	2 cut(s)	108, 1615
Psp1406I	AACGTT	1 cut(s)	1384
Psp5II	RGGWCCY	3 cut(s)	319, 1160, 1205
PspFI	CCCAGC	2 cut(s)	324, 2244
PspPPI	RGGWCCY	3 cut(s)	319, 1160, 1205
PspXI	VCTCGAGB	2 cut(s)	65, 2269
PstI	CTGCAG	4 cut(s)	850, 930, 1984, 2098
PstNI	CAGNNNCTG	4 cut(s)	782, 1376, 1856, 2120
PsyI	GACNNNGTC	1 cut(s)	2236
PvuII	CAGCTG	4 cut(s)	1853, 2120, 2210, 2219
RsaI	GTAC	5 cut(s)	635, 1232, 1865, 1988, 2057
RsaNI	GTAC	5 cut(s)	634, 1231, 1864, 1987, 2056
RseI	CAYNNNNRTG	4 cut(s)	335, 1329, 1512, 1761
SacI	GAGCTC	2 cut(s)	108, 1615
SacII	CCGCGG	1 cut(s)	30
SaqAI	TTAA	5 cut(s)	381, 605, 762, 918, 1104
Sau3AI	GATC	4 cut(s)	49, 286, 2164, 2172
SchI	GAGTC	1 cut(s)	2261
SduI	GDGCHC	6 cut(s)	108, 946, 1444, 1615, 1945, 2113
SexAI	ACCWGGT	1 cut(s)	1132
SfaNI	GCATC	7 cut(s)	118, 673, 775, 957, 1354, 1811, 2222
SfcI	CTRYAG	4 cut(s)	846, 926, 1980, 2094
Sfr274I	CTCGAG	2 cut(s)	65, 2269
Sfr303I	CCGCGG	1 cut(s)	30
SgrBI	CCGCGG	1 cut(s)	30
SlaI	CTCGAG	2 cut(s)	65, 2269
SmiMI	CAYNNNNRTG	4 cut(s)	335, 1329, 1512, 1761
SmlI	CTYRAG	5 cut(s)	65, 101, 471, 2067, 2269
SmoI	CTYRAG	5 cut(s)	65, 101, 471, 2067, 2269
SphI	GCATGC	2 cut(s)	1321, 1669
Sse9I	AATT	7 cut(s)	439, 606, 646, 855, 894, 1046, 1456
SseBI	AGGCCT	1 cut(s)	709
SspMI	CTAG	4 cut(s)	231, 813, 1707, 1713
SstI	GAGCTC	2 cut(s)	108, 1615
StuI	AGGCCT	1 cut(s)	709
StyI	CCWWGG	2 cut(s)	1126, 1706
TaaI	ACNGT	4 cut(s)	633, 1003, 1868, 2236
TaiI	ACGT	1 cut(s)	1387
TaqI	TCGA	4 cut(s)	66, 108, 2171, 2270
TaqII	GACCGA	1 cut(s)	374
TasI	AATT	7 cut(s)	439, 606, 646, 855, 894, 1046, 1456
TauI	GCSGC	4 cut(s)	26, 29, 172, 845
TfiI	GAWTC	7 cut(s)	110, 182, 661, 677, 862, 986, 1066
Tru1I	TTAA	5 cut(s)	381, 605, 762, 918, 1104
Tru9I	TTAA	5 cut(s)	381, 605, 762, 918, 1104
TscAI	CASTG	4 cut(s)	360, 1102, 1813, 1984
TseFI	GTSAC	2 cut(s)	355, 416
Tsp45I	GTSAC	2 cut(s)	355, 416
TspDTI	ATGAA	5 cut(s)	195, 416, 999, 1079, 1749
TspGWI	ACGGA	2 cut(s)	237, 1587
TspRI	CASTG	4 cut(s)	360, 1102, 1813, 1984
Tth111I	GACNNNGTC	1 cut(s)	2236
Van91I	CCANNNNNTGG	5 cut(s)	1277, 1328, 1607, 1625, 1661
VneI	GTGCAC	3 cut(s)	1440, 1941, 2109
VspI	ATTAAT	1 cut(s)	762
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	2 cut(s)	439, 855
XceI	RCATGY	2 cut(s)	1321, 1669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1133
XhoI	CTCGAG	2 cut(s)	65, 2269
XmaJI	CCTAGG	1 cut(s)	1706
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	4 cut(s)	231, 813, 1707, 1713
Zsp2I	ATGCAT	1 cut(s)	1804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.