Rroxscaffold_7G00161380

Far upstream element-binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
4163519 .. 4169567
6049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161380.1

Sequence Viewer

Length: 1077 bp
ATGGGTCCTAGAAGTGGCTTTGGTTCTGGTTGGGAGCAAAGGCCACCTCCAAACATGCAGGGGATGCCTCCACATGGCGGTGGTTATGATTACTATGGTGGACAAGGAGCTGAAGCCCCAGCCCAACATTCTACTCATGGCCCTTCTCATGCTCCTGGCCCTTCTCCTAACCCTATAATGGGTGGACCTCCATCCCAAGCAAACTATAATTATGGACAGCCACATGGTTCAGACTATAGGCATCCGGCTCCTTTTTCTCATGCTGCACCTCCTCAGCATGGCTATGGGCATGGGTATGAAGAACCAAAATATGATAATCACGCTCCACCACAGCACTCATATGGAGGACATGGAGCTTCTCAGCCGTATCCACAAACTGGAGCTCAGCCAGGTTATGGTCCACAGCAGCATTATGGTAAGCCACCAGCATATACCATGCCATCTCAGGGACCACCTCCCCAGTCTTATGGCGCCCCCATGGGTAGCCAACCAGGAGAAGCGGTTTATCAGACACCAGCTCAGTCATATGGTCAGAATGTCCCAGCTCAACAGCCATATCCATATGCATCCACTGCACCTGCACAGCAGACTTATGCTCCGTATGGTTCTGCCCCAGCTGCTGATGGGTACACTCAGCCACCAACTGCTTCGAGCGCAGGTTATCCACAGCAAGGAGGGCAGCCTGCTAGTTATGGTCAGCCTGGCTCGCAGCCTGCACCTGGCTATGCACAAGCAGCTCCTGCAGGGTATGCACAATACCCAACGTCTCAACAAGGTTACTCCGAGCAGTCTGCTTCATACACTGGTGGTTATGGGTACCAAGGGTCTCAAGATCCTGCCTATGGAGGTGTCTCTGCACCTGCCTATGGTGGAGCTCCAGCTGTGCAACAGGGCTACGCACAACCGGCACCTGCAGCAGCTGGGGCACAGCAGGGCTACACCCAGCCAGCACCAGCAACAACTCAACAAAGCTATGATCAATCGATCCCGCAGTCAGGCGGTTATGGGAAAACAGTATCACCTCAGCCGGGCTACGCTCAATACGATTCGAGTCAAATGTATGCTGCACCTCGTTGA

Protein Analysis

358

Amino Acids

36.86

Weight (kDa)

6.06

Isoelectric Point (pI)

74.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 586, 868, 919
Acc36I ACCTGC 4 cut(s) 586, 647, 868, 919
Acc65I GGTACC 1 cut(s) 816
AccB1I GGYRCC 3 cut(s) 470, 816, 907
AccB7I CCANNNNNTGG 2 cut(s) 377, 395
AciI CCGC 4 cut(s) 78, 500, 989, 999
AclWI GGATC 2 cut(s) 827, 979
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 2 cut(s) 629, 818
AjnI CCWGG 5 cut(s) 154, 388, 490, 700, 718
Alw21I GWGCWC 2 cut(s) 385, 877
Alw26I GTCTC 3 cut(s) 771, 831, 856
AlwI GGATC 2 cut(s) 827, 979
AlwNI CAGNNNCTG 3 cut(s) 620, 740, 920
AoxI GGCC 3 cut(s) 41, 139, 157
ApeKI GCWGC 9 cut(s) 263, 406, 617, 679, 709, 734, 914, 917, 1064
Asp718I GGTACC 1 cut(s) 816
AspLEI GCGC 2 cut(s) 473, 656
AspS9I GGNCC 6 cut(s) 5, 140, 158, 185, 398, 449
AsuC2I CCSGG 1 cut(s) 1029
AsuHPI GGTGA 1 cut(s) 1011
AvaII GGWCC 4 cut(s) 5, 185, 398, 449
BaeGI GKGCMC 1 cut(s) 928
BanI GGYRCC 3 cut(s) 470, 816, 907
BanII GRGCYC 2 cut(s) 385, 877
Bbv12I GWGCWC 2 cut(s) 385, 877
BbvCI CCTCAGC 2 cut(s) 273, 1023
BbvI GCAGC 9 cut(s) 250, 418, 604, 691, 721, 746, 926, 929, 1051
BccI CCATC 3 cut(s) 199, 448, 617
BceAI ACGGC 1 cut(s) 349
BcgI CGANNNNNNTGC 2 cut(s) 773, 807
BciT130I CCWGG 5 cut(s) 156, 390, 492, 702, 720
BciVI GTATCC 1 cut(s) 378
BclI TGATCA 1 cut(s) 976
BcnI CCSGG 1 cut(s) 1029
BcoDI GTCTC 3 cut(s) 771, 831, 856
BfaI CTAG 2 cut(s) 9, 687
BfmI CTRYAG 3 cut(s) 235, 741, 912
BfoI RGCGCY 1 cut(s) 474
BfuAI ACCTGC 4 cut(s) 586, 647, 868, 919
BfuI GTATCC 1 cut(s) 378
BisI GCNGC 9 cut(s) 264, 407, 618, 680, 710, 735, 915, 918, 1065
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 9 cut(s) 265, 408, 619, 681, 711, 736, 916, 919, 1066
Bme1390I CCNGG 6 cut(s) 156, 390, 492, 702, 720, 1029
Bme18I GGWCC 4 cut(s) 5, 185, 398, 449
BmgT120I GGNCC 6 cut(s) 5, 140, 158, 185, 398, 449
BmiI GGNNCC 6 cut(s) 6, 249, 450, 472, 818, 909
BmrFI CCNGG 6 cut(s) 156, 390, 492, 702, 720, 1029
BmrI ACTGGG 1 cut(s) 454
BmsI GCATC 3 cut(s) 54, 250, 575
BmuI ACTGGG 1 cut(s) 454
BpmI CTGGAG 2 cut(s) 399, 861
Bpu10I CCTNAGC 2 cut(s) 273, 1023
Bpu1102I GCTNAGC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 813
BpuMI CCSGG 1 cut(s) 1029
Bsa29I ATCGAT 1 cut(s) 983
BsaHI GRCGYC 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 2 cut(s) 477, 820
BsaXI ACNNNNNCTCC 4 cut(s) 486, 516, 580, 610
Bse118I RCCGGY 1 cut(s) 904
Bse1I ACTGG 3 cut(s) 382, 460, 808
BseBI CCWGG 5 cut(s) 156, 390, 492, 702, 720
BseCI ATCGAT 1 cut(s) 983
BseDI CCNNGG 2 cut(s) 477, 820
BseGI GGATG 4 cut(s) 69, 191, 241, 566
BseMII CTCAG 7 cut(s) 287, 374, 398, 458, 533, 647, 1037
BseNI ACTGG 3 cut(s) 382, 460, 808
BseRI GAGGAG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 9 cut(s) 250, 418, 604, 691, 721, 746, 926, 929, 1051
BseYI CCCAGC 5 cut(s) 118, 541, 613, 920, 942
BsgI GTGCAG 6 cut(s) 249, 558, 564, 699, 840, 1050
BshFI GGCC 3 cut(s) 43, 141, 159
BshNI GGYRCC 3 cut(s) 470, 816, 907
BshVI ATCGAT 1 cut(s) 983
BsiHKAI GWGCWC 2 cut(s) 385, 877
BsiSI CCGG 3 cut(s) 245, 905, 1028
BslFI GGGAC 2 cut(s) 462, 524
BsmAI GTCTC 3 cut(s) 771, 831, 856
BsmBI CGTCTC 1 cut(s) 771
BsmFI GGGAC 2 cut(s) 462, 524
BsnI GGCC 3 cut(s) 43, 141, 159
Bso31I GGTCTC 1 cut(s) 831
Bsp1286I GDGCHC 3 cut(s) 385, 877, 928
Bsp143I GATC 3 cut(s) 832, 976, 984
Bsp1720I GCTNAGC 1 cut(s) 384
Bsp19I CCATGG 1 cut(s) 477
BspACI CCGC 4 cut(s) 78, 500, 989, 999
BspANI GGCC 3 cut(s) 43, 141, 159
BspCNI CTCAG 7 cut(s) 286, 373, 397, 457, 532, 646, 1036
BspDI ATCGAT 1 cut(s) 983
BspLI GGNNCC 6 cut(s) 6, 249, 450, 472, 818, 909
BspMAI CTGCAG 2 cut(s) 745, 916
BspMI ACCTGC 4 cut(s) 586, 647, 868, 919
BspPI GGATC 2 cut(s) 827, 979
BspT107I GGYRCC 3 cut(s) 470, 816, 907
BspTNI GGTCTC 1 cut(s) 831
BsrFI RCCGGY 1 cut(s) 904
BsrI ACTGG 3 cut(s) 382, 460, 808
BssAI RCCGGY 1 cut(s) 904
BssECI CCNNGG 2 cut(s) 477, 820
BssMI GATC 3 cut(s) 832, 976, 984
BssNI GRCGYC 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 477, 820
Bst2UI CCWGG 5 cut(s) 156, 390, 492, 702, 720
Bst4CI ACNGT 1 cut(s) 1015
BstACI GRCGYC 1 cut(s) 471
BstAPI GCANNNNNTGC 4 cut(s) 64, 572, 740, 749
BstC8I GCNNGC 4 cut(s) 684, 707, 714, 948
BstDEI CTNAG 7 cut(s) 273, 360, 384, 444, 519, 633, 1023
BstDSI CCRYGG 1 cut(s) 477
BstF5I GGATG 4 cut(s) 69, 191, 241, 566
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 2 cut(s) 473, 656
BstKTI GATC 3 cut(s) 835, 979, 987
BstMAI GTCTC 3 cut(s) 771, 831, 856
BstMBI GATC 3 cut(s) 832, 976, 984
BstNI CCWGG 5 cut(s) 156, 390, 492, 702, 720
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 6 cut(s) 154, 388, 490, 700, 718, 1027
BstSFI CTRYAG 3 cut(s) 235, 741, 912
BstSLI GKGCMC 1 cut(s) 928
BstV1I GCAGC 9 cut(s) 250, 418, 604, 691, 721, 746, 926, 929, 1051
BstX2I RGATCY 1 cut(s) 832
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 1 cut(s) 832
Bsu15I ATCGAT 1 cut(s) 983
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 3 cut(s) 43, 141, 159
BsuTUI ATCGAT 1 cut(s) 983
BtgI CCRYGG 1 cut(s) 477
BtsCI GGATG 4 cut(s) 69, 191, 241, 566
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 2 cut(s) 570, 801
BveI ACCTGC 4 cut(s) 586, 647, 868, 919
Cac8I GCNNGC 4 cut(s) 684, 707, 714, 948
CaiI CAGNNNCTG 3 cut(s) 620, 740, 920
CfoI GCGC 2 cut(s) 473, 656
Cfr10I RCCGGY 1 cut(s) 904
Cfr13I GGNCC 6 cut(s) 5, 140, 158, 185, 398, 449
ClaI ATCGAT 1 cut(s) 983
Csp6I GTAC 2 cut(s) 628, 817
CviQI GTAC 2 cut(s) 628, 817
DdeI CTNAG 7 cut(s) 273, 360, 384, 444, 519, 633, 1023
DinI GGCGCC 1 cut(s) 472
DpnI GATC 3 cut(s) 834, 978, 986
DpnII GATC 3 cut(s) 832, 976, 984
Ecl136II GAGCTC 2 cut(s) 383, 875
Eco130I CCWWGG 2 cut(s) 477, 820
Eco24I GRGCYC 2 cut(s) 385, 877
Eco31I GGTCTC 1 cut(s) 831
Eco47I GGWCC 4 cut(s) 5, 185, 398, 449
Eco53kI GAGCTC 2 cut(s) 383, 875
Eco57I CTGAAG 1 cut(s) 132
EcoICRI GAGCTC 2 cut(s) 383, 875
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 5 cut(s) 154, 388, 490, 700, 718
EcoT14I CCWWGG 2 cut(s) 477, 820
EcoT22I ATGCAT 1 cut(s) 568
EcoT38I GRGCYC 2 cut(s) 385, 877
EgeI GGCGCC 1 cut(s) 472
EheI GGCGCC 1 cut(s) 472
ErhI CCWWGG 2 cut(s) 477, 820
Esp3I CGTCTC 1 cut(s) 771
FaqI GGGAC 2 cut(s) 462, 524
FauI CCCGC 1 cut(s) 996
FauNDI CATATG 3 cut(s) 340, 526, 562
FbaI TGATCA 1 cut(s) 976
Fnu4HI GCNGC 9 cut(s) 264, 407, 618, 680, 710, 735, 915, 918, 1065
FokI GGATG 4 cut(s) 76, 178, 228, 553
FriOI GRGCYC 2 cut(s) 385, 877
Fsp4HI GCNGC 9 cut(s) 264, 407, 618, 680, 710, 735, 915, 918, 1065
FspBI CTAG 2 cut(s) 9, 687
GlaI GCGC 2 cut(s) 472, 655
GluI GCNGC 9 cut(s) 264, 407, 618, 680, 710, 735, 915, 918, 1065
GsaI CCCAGC 5 cut(s) 122, 545, 617, 924, 946
GsuI CTGGAG 2 cut(s) 399, 861
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 3 cut(s) 43, 141, 159
HapII CCGG 3 cut(s) 245, 905, 1028
HhaI GCGC 2 cut(s) 473, 656
Hin1I GRCGYC 1 cut(s) 471
Hin6I GCGC 2 cut(s) 471, 654
HinP1I GCGC 2 cut(s) 471, 654
HinfI GANTC 2 cut(s) 1046, 1051
HpaII CCGG 3 cut(s) 245, 905, 1028
HphI GGTGA 1 cut(s) 1011
Hpy166II GTNNAC 4 cut(s) 101, 185, 401, 630
Hpy188I TCNGA 4 cut(s) 232, 510, 534, 784
Hpy188III TCNNGA 1 cut(s) 830
Hpy8I GTNNAC 4 cut(s) 101, 185, 401, 630
HpyAV CCTTC 2 cut(s) 153, 171
HpyCH4III ACNGT 1 cut(s) 1015
HpyCH4IV ACGT 1 cut(s) 764
HpyF3I CTNAG 7 cut(s) 273, 360, 384, 444, 519, 633, 1023
HpySE526I ACGT 1 cut(s) 764
Hsp92I GRCGYC 1 cut(s) 471
HspAI GCGC 2 cut(s) 471, 654
KasI GGCGCC 1 cut(s) 470
KpnI GGTACC 1 cut(s) 820
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 3 cut(s) 832, 976, 984
Lsp1109I GCAGC 9 cut(s) 250, 418, 604, 691, 721, 746, 926, 929, 1051
LweI GCATC 3 cut(s) 54, 250, 575
MaeI CTAG 2 cut(s) 9, 687
MaeII ACGT 1 cut(s) 764
MaeIII GTNAC 1 cut(s) 776
MalI GATC 3 cut(s) 834, 978, 986
MboI GATC 3 cut(s) 832, 976, 984
MboII GAAGA 1 cut(s) 311
MflI RGATCY 1 cut(s) 832
MhlI GDGCHC 3 cut(s) 385, 877, 928
MluCI AATT 1 cut(s) 208
Mly113I GGCGCC 1 cut(s) 471
MlyI GAGTC 1 cut(s) 1060
Mph1103I ATGCAT 1 cut(s) 568
MslI CAYNNNNRTG 4 cut(s) 78, 282, 294, 339
MspA1I CMGCKG 3 cut(s) 617, 881, 920
MspI CCGG 3 cut(s) 245, 905, 1028
MspR9I CCNGG 6 cut(s) 156, 390, 492, 702, 720, 1029
MvaI CCWGG 5 cut(s) 156, 390, 492, 702, 720
NarI GGCGCC 1 cut(s) 471
NciI CCSGG 1 cut(s) 1029
NcoI CCATGG 1 cut(s) 477
NdeI CATATG 3 cut(s) 340, 526, 562
NdeII GATC 3 cut(s) 832, 976, 984
NlaIV GGNNCC 6 cut(s) 6, 249, 450, 472, 818, 909
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 1 cut(s) 58
PaqCI CACCTGC 3 cut(s) 586, 868, 919
PcsI WCGNNNNNNNCGW 1 cut(s) 1041
PfeI GAWTC 1 cut(s) 1046
PflMI CCANNNNNTGG 2 cut(s) 377, 395
PkrI GCNGC 9 cut(s) 265, 408, 619, 681, 711, 736, 916, 919, 1066
PleI GAGTC 1 cut(s) 1059
PluTI GGCGCC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 1059
PpuMI RGGWCCY 1 cut(s) 5
Psp124BI GAGCTC 2 cut(s) 385, 877
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 5 cut(s) 154, 388, 490, 700, 718
PspFI CCCAGC 5 cut(s) 118, 541, 613, 920, 942
PspGI CCWGG 5 cut(s) 154, 388, 490, 700, 718
PspN4I GGNNCC 6 cut(s) 6, 249, 450, 472, 818, 909
PspPI GGNCC 6 cut(s) 5, 140, 158, 185, 398, 449
PspPPI RGGWCCY 1 cut(s) 5
PstI CTGCAG 2 cut(s) 745, 916
PstNI CAGNNNCTG 3 cut(s) 620, 740, 920
PsuI RGATCY 1 cut(s) 832
PvuII CAGCTG 3 cut(s) 617, 881, 920
RsaI GTAC 2 cut(s) 629, 818
RsaNI GTAC 2 cut(s) 628, 817
RseI CAYNNNNRTG 4 cut(s) 78, 282, 294, 339
SacI GAGCTC 2 cut(s) 385, 877
SatI GCNGC 9 cut(s) 264, 407, 618, 680, 710, 735, 915, 918, 1065
Sau3AI GATC 3 cut(s) 832, 976, 984
Sau96I GGNCC 6 cut(s) 5, 140, 158, 185, 398, 449
SbfI CCTGCAGG 1 cut(s) 745
SchI GAGTC 1 cut(s) 1060
ScrFI CCNGG 6 cut(s) 156, 390, 492, 702, 720, 1029
SdaI CCTGCAGG 1 cut(s) 745
SduI GDGCHC 3 cut(s) 385, 877, 928
SfaNI GCATC 3 cut(s) 54, 250, 575
SfcI CTRYAG 3 cut(s) 235, 741, 912
SfoI GGCGCC 1 cut(s) 472
SinI GGWCC 4 cut(s) 5, 185, 398, 449
SmiMI CAYNNNNRTG 4 cut(s) 78, 282, 294, 339
SmlI CTYRAG 1 cut(s) 828
SmoI CTYRAG 1 cut(s) 828
Sse8387I CCTGCAGG 1 cut(s) 745
Sse9I AATT 1 cut(s) 208
SsiI CCGC 4 cut(s) 78, 500, 989, 999
SspDI GGCGCC 1 cut(s) 470
SspMI CTAG 2 cut(s) 9, 687
SstI GAGCTC 2 cut(s) 385, 877
StyD4I CCNGG 6 cut(s) 154, 388, 490, 700, 718, 1027
StyI CCWWGG 2 cut(s) 477, 820
TaaI ACNGT 1 cut(s) 1015
TaiI ACGT 1 cut(s) 767
TaqI TCGA 3 cut(s) 650, 983, 1049
TasI AATT 1 cut(s) 208
TfiI GAWTC 1 cut(s) 1046
TscAI CASTG 2 cut(s) 577, 808
TseI GCWGC 9 cut(s) 263, 406, 617, 679, 709, 734, 914, 917, 1064
TspDTI ATGAA 2 cut(s) 312, 786
TspGWI ACGGA 1 cut(s) 588
TspRI CASTG 2 cut(s) 577, 808
Van91I CCANNNNNTGG 2 cut(s) 377, 395
VpaK11BI GGWCC 4 cut(s) 5, 185, 398, 449
XceI RCATGY 1 cut(s) 58
XspI CTAG 2 cut(s) 9, 687
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.