MD15G1088800.v1.1

Far upstream element-binding protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
6186530 .. 6187933
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1088800.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGGTCCAAGAAGTGGCTATGGTTCTGGTTGGGAGCAAAGGCCACCTTCTAGCATGCCACATGGTGGTGGTTATAATTACTATGGTGGACAAGTAGCTGATGCCCCAGTATCTGCCCAACATTCTGCTCCCGTTCCTTCTCATGCTCCTGGCCCATCTCCTAACCCTGCAATGGGTGCACCGTCCCAAGCAAATTACAATTATGGGCAGCCACATGGTCCAGATTATGGTCATCCGGCACCTTATTCCCAGGCTGCACCTCCTCAGCATAACTATGGGCATGGATACGAAGAACCAAAATATGATAATCATGCTCCAACGCAGCACCCTTATGCAGGATATGCACCTTCCCAGCAATATCCACAAACTGGAGCTCATCCAGGTTATGGTCCACAGCAGCATTACAGCAAGCCACCACCATACGGCATGCCATCACAAGCTCCAACTCCTCAGTCTTATGGCCCTCCTAGGGCTAATCAACCAGGAGATGCAGTTTATCAGGGTTCTGCACCACCTCACTCATATGGTCCGAATGTTCTAGCTCAACAGTCATATCCATATGCATCCAGTGGACCTGCTCAGCAGACGTATCCTGCATATGGTTCTGCACCAGCTGCTGATGGGTACAGTCAGCCACCACCCGCTTCTGGCTCAGGTTATCCACAACAAGGCGGGCAACCTGTTAGCTATGGCCAGCCTGGTGCACAGCAGGCAGCTGGCGGCTATGGACAGGCAGCTCCTACTGCAGGGTACGCACAATACCCATCTTCTCAACAAGGTTACGCTGAGCAGGCTGCTCCAAATGCAGCAGGTTACGGGTACCAGGGGTCTCAAGACCCTGGATATGGAGCTGCCCCTGCAGCATCATATGGTGCACCAGCGGCTGCGCAGCCAGGTTATACTCAATCGGCAGCTCAACAAAATTATGATCAGTCAATCCCCCAGTCCGCCGGTTATGGAGCTGCACCACCAGCTGCATCAGCTGGTTATGGGAAGACGGTGTCTCCTCAGCCTGGTTATCCCCAGTACGACTCGAGCCAAATGTATGCTGCTGCACCTCGTTGA

Protein Analysis

355

Amino Acids

36.22

Weight (kDa)

6.13

Isoelectric Point (pI)

68.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
Acc16I TGCGCA 1 cut(s) 888
Acc36I ACCTGC 2 cut(s) 583, 800
Acc65I GGTACC 1 cut(s) 819
AccB1I GGYRCC 2 cut(s) 238, 819
AccB7I CCANNNNNTGG 5 cut(s) 14, 65, 227, 368, 386
AciI CCGC 5 cut(s) 642, 672, 720, 881, 948
AcoI YGGCCR 1 cut(s) 691
AdeI CACNNNGTG 1 cut(s) 65
AfaI GTAC 4 cut(s) 626, 752, 821, 1028
AjnI CCWGG 9 cut(s) 148, 249, 379, 481, 697, 822, 838, 892, 1012
Alw21I GWGCWC 4 cut(s) 181, 376, 706, 877
Alw26I GTCTC 2 cut(s) 834, 1008
Alw44I GTGCAC 3 cut(s) 177, 702, 873
AlwNI CAGNNNCTG 3 cut(s) 113, 617, 884
Ama87I CYCGRG 1 cut(s) 1033
AoxI GGCC 4 cut(s) 41, 151, 460, 691
ApaLI GTGCAC 3 cut(s) 177, 702, 873
Asp718I GGTACC 1 cut(s) 819
AspA2I CCTAGG 1 cut(s) 467
AspLEI GCGC 1 cut(s) 889
AspS9I GGNCC 7 cut(s) 5, 152, 218, 389, 461, 527, 572
AvaI CYCGRG 1 cut(s) 1033
AvaII GGWCC 5 cut(s) 5, 218, 389, 527, 572
AvrII CCTAGG 1 cut(s) 467
BaeGI GKGCMC 3 cut(s) 181, 706, 877
BalI TGGCCA 1 cut(s) 693
BanI GGYRCC 2 cut(s) 238, 819
BanII GRGCYC 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 1001
Bbv12I GWGCWC 4 cut(s) 181, 376, 706, 877
BbvCI CCTCAGC 2 cut(s) 264, 1008
BccI CCATC 4 cut(s) 163, 439, 614, 772
BceAI ACGGC 1 cut(s) 439
BciT130I CCWGG 9 cut(s) 150, 251, 381, 483, 699, 824, 840, 894, 1014
BciVI GTATCC 2 cut(s) 278, 600
BclI TGATCA 1 cut(s) 928
BcoDI GTCTC 2 cut(s) 834, 1008
BfaI CTAG 3 cut(s) 51, 468, 539
BfmI CTRYAG 2 cut(s) 744, 858
BfuAI ACCTGC 2 cut(s) 583, 800
BfuI GTATCC 2 cut(s) 278, 600
BlnI CCTAGG 1 cut(s) 467
BlpI GCTNAGC 2 cut(s) 579, 786
Bme1390I CCNGG 9 cut(s) 150, 251, 381, 483, 699, 824, 840, 894, 1014
Bme18I GGWCC 5 cut(s) 5, 218, 389, 527, 572
BmeT110I CYCGRG 1 cut(s) 1033
BmgT120I GGNCC 7 cut(s) 5, 152, 218, 389, 461, 527, 572
BmiI GGNNCC 3 cut(s) 6, 240, 821
BmrFI CCNGG 9 cut(s) 150, 251, 381, 483, 699, 824, 840, 894, 1014
BmrI ACTGGG 3 cut(s) 101, 937, 1018
BmsI GCATC 5 cut(s) 91, 478, 572, 872, 986
BmuI ACTGGG 3 cut(s) 101, 937, 1018
BpiI GAAGAC 1 cut(s) 1001
BpmI CTGGAG 1 cut(s) 390
Bpu10I CCTNAGC 3 cut(s) 264, 652, 1008
Bpu1102I GCTNAGC 2 cut(s) 579, 786
BpuEI CTTGAG 1 cut(s) 816
BsaI GGTCTC 1 cut(s) 834
BsaJI CCNNGG 4 cut(s) 249, 467, 823, 838
BsaXI ACNNNNNCTCC 4 cut(s) 477, 507, 988, 1018
Bse118I RCCGGY 1 cut(s) 950
Bse1I ACTGG 5 cut(s) 107, 373, 567, 943, 1024
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 9 cut(s) 150, 251, 381, 483, 699, 824, 840, 894, 1014
BseDI CCNNGG 4 cut(s) 249, 467, 823, 838
BseGI GGATG 3 cut(s) 232, 376, 563
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 6 cut(s) 278, 464, 593, 666, 777, 1022
BseNI ACTGG 5 cut(s) 107, 373, 567, 943, 1024
BseRI GAGGAG 3 cut(s) 252, 438, 996
BseSI GKGCMC 3 cut(s) 181, 706, 877
BseYI CCCAGC 1 cut(s) 351
BsgI GTGCAG 5 cut(s) 240, 492, 591, 948, 1038
BshFI GGCC 4 cut(s) 43, 153, 462, 693
BshNI GGYRCC 2 cut(s) 238, 819
BsiHKAI GWGCWC 4 cut(s) 181, 376, 706, 877
BsiHKCI CYCGRG 1 cut(s) 1033
BsiSI CCGG 2 cut(s) 236, 951
BslFI GGGAC 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 834, 1008
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 4 cut(s) 43, 153, 462, 693
Bso31I GGTCTC 1 cut(s) 834
BsoBI CYCGRG 1 cut(s) 1033
Bsp1286I GDGCHC 4 cut(s) 181, 376, 706, 877
Bsp143I GATC 1 cut(s) 928
Bsp1720I GCTNAGC 2 cut(s) 579, 786
BspACI CCGC 5 cut(s) 642, 672, 720, 881, 948
BspANI GGCC 4 cut(s) 43, 153, 462, 693
BspCNI CTCAG 6 cut(s) 277, 463, 592, 665, 778, 1021
BspLI GGNNCC 3 cut(s) 6, 240, 821
BspMAI CTGCAG 2 cut(s) 748, 862
BspMI ACCTGC 2 cut(s) 583, 800
BspT107I GGYRCC 2 cut(s) 238, 819
BspTNI GGTCTC 1 cut(s) 834
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 950
BsrI ACTGG 5 cut(s) 107, 373, 567, 943, 1024
BssAI RCCGGY 1 cut(s) 950
BssECI CCNNGG 4 cut(s) 249, 467, 823, 838
BssMI GATC 1 cut(s) 928
BssT1I CCWWGG 1 cut(s) 467
Bst2UI CCWGG 9 cut(s) 150, 251, 381, 483, 699, 824, 840, 894, 1014
Bst4CI ACNGT 4 cut(s) 183, 549, 629, 1000
BstAPI GCANNNNNTGC 3 cut(s) 176, 341, 614
BstC8I GCNNGC 8 cut(s) 56, 410, 428, 674, 695, 711, 718, 792
BstDEI CTNAG 6 cut(s) 264, 450, 579, 652, 786, 1008
BstENI CCTNNNNNAGG 2 cut(s) 333, 744
BstF5I GGATG 3 cut(s) 232, 376, 563
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 1 cut(s) 931
BstMAI GTCTC 2 cut(s) 834, 1008
BstMBI GATC 1 cut(s) 928
BstNI CCWGG 9 cut(s) 150, 251, 381, 483, 699, 824, 840, 894, 1014
BstNSI RCATGY 2 cut(s) 58, 430
BstSCI CCNGG 9 cut(s) 148, 249, 379, 481, 697, 822, 838, 892, 1012
BstSFI CTRYAG 2 cut(s) 744, 858
BstSLI GKGCMC 3 cut(s) 181, 706, 877
BstV2I GAAGAC 1 cut(s) 1001
BsuI GTATCC 2 cut(s) 278, 600
BsuRI GGCC 4 cut(s) 43, 153, 462, 693
BtsCI GGATG 3 cut(s) 232, 376, 563
BtsIMutI CAGTG 1 cut(s) 574
BveI ACCTGC 2 cut(s) 583, 800
Cac8I GCNNGC 8 cut(s) 56, 410, 428, 674, 695, 711, 718, 792
CaiI CAGNNNCTG 3 cut(s) 113, 617, 884
CfoI GCGC 1 cut(s) 889
Cfr10I RCCGGY 1 cut(s) 950
Cfr13I GGNCC 7 cut(s) 5, 152, 218, 389, 461, 527, 572
Csp6I GTAC 4 cut(s) 625, 751, 820, 1027
CviAII CATG 7 cut(s) 55, 62, 143, 215, 281, 311, 427
CviQI GTAC 4 cut(s) 625, 751, 820, 1027
DdeI CTNAG 6 cut(s) 264, 450, 579, 652, 786, 1008
DpnI GATC 1 cut(s) 930
DpnII GATC 1 cut(s) 928
DraIII CACNNNGTG 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 691
EciI GGCGGA 1 cut(s) 937
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 834
Eco47I GGWCC 5 cut(s) 5, 218, 389, 527, 572
Eco53kI GAGCTC 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 1033
EcoICRI GAGCTC 1 cut(s) 374
EcoNI CCTNNNNNAGG 2 cut(s) 333, 744
EcoRII CCWGG 9 cut(s) 148, 249, 379, 481, 697, 822, 838, 892, 1012
EcoT14I CCWWGG 1 cut(s) 467
EcoT22I ATGCAT 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 467
FaeI CATG 7 cut(s) 58, 65, 146, 218, 284, 314, 430
FalI AAGNNNNNCTT 2 cut(s) 31, 63
FaqI GGGAC 1 cut(s) 169
FatI CATG 7 cut(s) 54, 61, 142, 214, 280, 310, 426
FauI CCCGC 2 cut(s) 649, 665
FauNDI CATATG 4 cut(s) 523, 559, 598, 868
FbaI TGATCA 1 cut(s) 928
FokI GGATG 3 cut(s) 219, 363, 550
FriOI GRGCYC 1 cut(s) 376
FspBI CTAG 3 cut(s) 51, 468, 539
FspI TGCGCA 1 cut(s) 888
GlaI GCGC 1 cut(s) 888
GsaI CCCAGC 1 cut(s) 355
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 4 cut(s) 43, 153, 462, 693
HapII CCGG 2 cut(s) 236, 951
HhaI GCGC 1 cut(s) 889
Hin1II CATG 7 cut(s) 58, 65, 146, 218, 284, 314, 430
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HinfI GANTC 1 cut(s) 1031
HpaII CCGG 2 cut(s) 236, 951
Hpy166II GTNNAC 6 cut(s) 89, 179, 392, 572, 704, 875
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 2 cut(s) 221, 833
Hpy8I GTNNAC 6 cut(s) 89, 179, 392, 572, 704, 875
HpyAV CCTTC 3 cut(s) 57, 147, 357
HpyCH4III ACNGT 4 cut(s) 183, 549, 629, 1000
HpyCH4IV ACGT 1 cut(s) 587
HpyF3I CTNAG 6 cut(s) 264, 450, 579, 652, 786, 1008
HpySE526I ACGT 1 cut(s) 587
Hsp92II CATG 7 cut(s) 58, 65, 146, 218, 284, 314, 430
HspAI GCGC 1 cut(s) 887
KpnI GGTACC 1 cut(s) 823
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 1 cut(s) 928
LweI GCATC 5 cut(s) 91, 478, 572, 872, 986
MaeI CTAG 3 cut(s) 51, 468, 539
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 2 cut(s) 779, 812
MalI GATC 1 cut(s) 930
MboI GATC 1 cut(s) 928
MboII GAAGA 3 cut(s) 302, 759, 1006
MhlI GDGCHC 4 cut(s) 181, 376, 706, 877
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 4 cut(s) 76, 193, 199, 922
MluNI TGGCCA 1 cut(s) 693
MlyI GAGTC 1 cut(s) 1025
MmeI TCCRAC 2 cut(s) 341, 467
MnlI CCTC 6 cut(s) 270, 273, 459, 474, 525, 1017
Mox20I TGGCCA 1 cut(s) 693
Mph1103I ATGCAT 1 cut(s) 565
MscI TGGCCA 1 cut(s) 693
MslI CAYNNNNRTG 4 cut(s) 66, 273, 330, 522
Msp20I TGGCCA 1 cut(s) 693
MspA1I CMGCKG 5 cut(s) 614, 716, 881, 974, 983
MspI CCGG 2 cut(s) 236, 951
MspR9I CCNGG 9 cut(s) 150, 251, 381, 483, 699, 824, 840, 894, 1014
MvaI CCWGG 9 cut(s) 150, 251, 381, 483, 699, 824, 840, 894, 1014
NdeI CATATG 4 cut(s) 523, 559, 598, 868
NdeII GATC 1 cut(s) 928
NlaIII CATG 7 cut(s) 58, 65, 146, 218, 284, 314, 430
NlaIV GGNNCC 3 cut(s) 6, 240, 821
NsbI TGCGCA 1 cut(s) 888
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 2 cut(s) 58, 430
PaeI GCATGC 2 cut(s) 58, 430
PaeR7I CTCGAG 1 cut(s) 1033
PflFI GACNNNGTC 1 cut(s) 1000
PflMI CCANNNNNTGG 5 cut(s) 14, 65, 227, 368, 386
PleI GAGTC 1 cut(s) 1025
PpsI GAGTC 1 cut(s) 1025
PsiI TTATAA 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 376
Psp6I CCWGG 9 cut(s) 148, 249, 379, 481, 697, 822, 838, 892, 1012
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 9 cut(s) 148, 249, 379, 481, 697, 822, 838, 892, 1012
PspN4I GGNNCC 3 cut(s) 6, 240, 821
PspPI GGNCC 7 cut(s) 5, 152, 218, 389, 461, 527, 572
PspXI VCTCGAGB 1 cut(s) 1033
PstI CTGCAG 2 cut(s) 748, 862
PstNI CAGNNNCTG 3 cut(s) 113, 617, 884
PsyI GACNNNGTC 1 cut(s) 1000
PvuII CAGCTG 4 cut(s) 614, 716, 974, 983
RsaI GTAC 4 cut(s) 626, 752, 821, 1028
RsaNI GTAC 4 cut(s) 625, 751, 820, 1027
RseI CAYNNNNRTG 4 cut(s) 66, 273, 330, 522
SacI GAGCTC 1 cut(s) 376
Sau3AI GATC 1 cut(s) 928
Sau96I GGNCC 7 cut(s) 5, 152, 218, 389, 461, 527, 572
SchI GAGTC 1 cut(s) 1025
ScrFI CCNGG 9 cut(s) 150, 251, 381, 483, 699, 824, 840, 894, 1014
SduI GDGCHC 4 cut(s) 181, 376, 706, 877
SfaNI GCATC 5 cut(s) 91, 478, 572, 872, 986
SfcI CTRYAG 2 cut(s) 744, 858
Sfr274I CTCGAG 1 cut(s) 1033
SinI GGWCC 5 cut(s) 5, 218, 389, 527, 572
SlaI CTCGAG 1 cut(s) 1033
SmiMI CAYNNNNRTG 4 cut(s) 66, 273, 330, 522
SmlI CTYRAG 2 cut(s) 831, 1033
SmoI CTYRAG 2 cut(s) 831, 1033
SphI GCATGC 2 cut(s) 58, 430
Sse9I AATT 4 cut(s) 76, 193, 199, 922
SsiI CCGC 5 cut(s) 642, 672, 720, 881, 948
SspMI CTAG 3 cut(s) 51, 468, 539
SstI GAGCTC 1 cut(s) 376
StyD4I CCNGG 9 cut(s) 148, 249, 379, 481, 697, 822, 838, 892, 1012
StyI CCWWGG 1 cut(s) 467
TaaI ACNGT 4 cut(s) 183, 549, 629, 1000
TaiI ACGT 1 cut(s) 590
TaqI TCGA 1 cut(s) 1034
TasI AATT 4 cut(s) 76, 193, 199, 922
TauI GCSGC 2 cut(s) 723, 884
TscAI CASTG 1 cut(s) 574
TspRI CASTG 1 cut(s) 574
Tth111I GACNNNGTC 1 cut(s) 1000
Van91I CCANNNNNTGG 5 cut(s) 14, 65, 227, 368, 386
VneI GTGCAC 3 cut(s) 177, 702, 873
VpaK11BI GGWCC 5 cut(s) 5, 218, 389, 527, 572
XagI CCTNNNNNAGG 2 cut(s) 333, 744
XceI RCATGY 2 cut(s) 58, 430
XhoI CTCGAG 1 cut(s) 1033
XmaJI CCTAGG 1 cut(s) 467
XspI CTAG 3 cut(s) 51, 468, 539
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.