Rmu_co8474845.1_g000001

Far upstream element-binding protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8474845.1
Physical Location & Seq
Reverse (-)
124 .. 1586
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8474845.1_g000001.1.cds

Sequence Viewer

Length: 1215 bp
atggttgttgatggtggtgctcaatggggtccacgaggtgctcgtccatcccagcactcttcatatgattatcagcaacgaggaccatatcagtcccgtactcagtaccctcctgcatatgggaattatcctcaacatatgggtcctagaagtggctttggttctggttgggagcaaaggccacctccaaacatgcaggggatgcctccacatggcggtggttatgattactatggcagacaaggagctgaagccccagcccaacattctactcatggcccttctcatgctcctggcccttctcctaaccctataatgggtggacctccatcccaagcaaactataattatggacagccacatggttcagactataggcatccggctcctttttctcatgctgcaccccctcagcatggctatgggcatgggtatgaagaaccaaaatatgataatcatgctccaccacagcactcatatggaggacatggagcttctcagccgtatccacaaactggagcccagccaggttatggtccacagcagcattatggtaagccaccagcatataccatgccatctcagggaccacctccccagtcttatggcgcccccatgggtagccaaccaggagaagcggtttatcagacaccagctcagtcatatggtcagaatgtcccagctcaacagccatatccatatgcatccactgcacctgcacagcagacttatgctccgtatggttctgccccagctgctgatgggtacactcagccaccaactgcttcgagcgcaggttatccacagcaaggagggcagcctgctagttatggtcagcctggctcgcagcctgcacctggctatgcacaagcagctcctgcagggtatgcacaatacccaacgtctcaacaaggttactccgagcagtctgcttcatacactggtggttatgggtaccaagcgtctcaggatcctgcctatggaggtgtctctgcacctgcctatggtggagctccagctgcgcaacagggctacgcacaaccagcacccgcagcagctggggcacagcagggctacacccagccagcaccagcaacaactcaacaaagctatgatcaatcaatcccgcagtcaggcggttatgggaaaacagtgtcacctcagcctggctacgctcaatacgactcgagtcaaatgtatgctgcacctcgttga

Protein Analysis

404

Amino Acids

42.17

Weight (kDa)

6.55

Isoelectric Point (pI)

71.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 724, 1006
Acc16I TGCGCA 1 cut(s) 1023
Acc36I ACCTGC 3 cut(s) 724, 785, 1006
Acc65I GGTACC 1 cut(s) 954
AccB1I GGYRCC 2 cut(s) 608, 954
AccB7I CCANNNNNTGG 2 cut(s) 515, 533
AciI CCGC 5 cut(s) 216, 638, 1050, 1127, 1137
AclWI GGATC 2 cut(s) 965, 978
AcuI CTGAAG 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 609
AdeI CACNNNGTG 1 cut(s) 38
AfaI GTAC 4 cut(s) 100, 107, 767, 956
AjnI CCWGG 6 cut(s) 292, 526, 628, 838, 856, 1165
Alw21I GWGCWC 3 cut(s) 22, 43, 1015
Alw26I GTCTC 3 cut(s) 909, 969, 994
AlwI GGATC 2 cut(s) 965, 978
AlwNI CAGNNNCTG 3 cut(s) 758, 878, 1058
Ama87I CYCGRG 1 cut(s) 1186
AoxI GGCC 3 cut(s) 179, 277, 295
Asp718I GGTACC 1 cut(s) 954
AspLEI GCGC 3 cut(s) 611, 794, 1024
AspS9I GGNCC 8 cut(s) 29, 83, 143, 278, 296, 323, 536, 587
AsuHPI GGTGA 1 cut(s) 1149
AvaI CYCGRG 1 cut(s) 1186
AvaII GGWCC 6 cut(s) 29, 83, 143, 323, 536, 587
BaeGI GKGCMC 1 cut(s) 1066
BamHI GGATCC 1 cut(s) 970
BanI GGYRCC 2 cut(s) 608, 954
BanII GRGCYC 2 cut(s) 523, 1015
BauI CACGAG 1 cut(s) 33
Bbv12I GWGCWC 3 cut(s) 22, 43, 1015
BbvCI CCTCAGC 2 cut(s) 411, 1161
BccI CCATC 5 cut(s) 5, 55, 337, 586, 755
BceAI ACGGC 1 cut(s) 487
BcgI CGANNNNNNTGC 2 cut(s) 911, 945
BciT130I CCWGG 6 cut(s) 294, 528, 630, 840, 858, 1167
BciVI GTATCC 1 cut(s) 516
BclI TGATCA 1 cut(s) 1114
BcoDI GTCTC 3 cut(s) 909, 969, 994
BfaI CTAG 2 cut(s) 147, 825
BfmI CTRYAG 2 cut(s) 373, 879
BfoI RGCGCY 1 cut(s) 612
BfuAI ACCTGC 3 cut(s) 724, 785, 1006
BfuI GTATCC 1 cut(s) 516
Bme1390I CCNGG 6 cut(s) 294, 528, 630, 840, 858, 1167
Bme18I GGWCC 6 cut(s) 29, 83, 143, 323, 536, 587
BmeT110I CYCGRG 1 cut(s) 1186
BmgT120I GGNCC 8 cut(s) 29, 83, 143, 278, 296, 323, 536, 587
BmiI GGNNCC 8 cut(s) 30, 144, 387, 520, 588, 610, 956, 972
BmrFI CCNGG 6 cut(s) 294, 528, 630, 840, 858, 1167
BmrI ACTGGG 1 cut(s) 592
BmsI GCATC 3 cut(s) 192, 388, 713
BmuI ACTGGG 1 cut(s) 592
BoxI GACNNNNGTC 1 cut(s) 1188
BpmI CTGGAG 2 cut(s) 537, 999
Bpu10I CCTNAGC 2 cut(s) 411, 1161
BsaHI GRCGYC 1 cut(s) 609
BsaJI CCNNGG 1 cut(s) 615
BsaXI ACNNNNNCTCC 4 cut(s) 624, 654, 718, 748
Bse1I ACTGG 3 cut(s) 520, 598, 946
BseBI CCWGG 6 cut(s) 294, 528, 630, 840, 858, 1167
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 5 cut(s) 47, 207, 329, 379, 704
BseMII CTCAG 8 cut(s) 116, 425, 512, 596, 671, 785, 980, 1175
BseNI ACTGG 3 cut(s) 520, 598, 946
BseSI GKGCMC 1 cut(s) 1066
BseYI CCCAGC 7 cut(s) 51, 256, 522, 679, 751, 1058, 1080
BsgI GTGCAG 6 cut(s) 387, 696, 702, 837, 978, 1188
BshFI GGCC 3 cut(s) 181, 279, 297
BshNI GGYRCC 2 cut(s) 608, 954
BsiHKAI GWGCWC 3 cut(s) 22, 43, 1015
BsiHKCI CYCGRG 1 cut(s) 1186
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 3 cut(s) 79, 600, 662
BsmAI GTCTC 3 cut(s) 909, 969, 994
BsmBI CGTCTC 2 cut(s) 909, 969
BsmFI GGGAC 3 cut(s) 79, 600, 662
BsnI GGCC 3 cut(s) 181, 279, 297
BsoBI CYCGRG 1 cut(s) 1186
Bsp1286I GDGCHC 5 cut(s) 22, 43, 523, 1015, 1066
Bsp143I GATC 2 cut(s) 970, 1114
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 5 cut(s) 216, 638, 1050, 1127, 1137
BspANI GGCC 3 cut(s) 181, 279, 297
BspCNI CTCAG 8 cut(s) 115, 424, 511, 595, 670, 784, 979, 1174
BspLI GGNNCC 8 cut(s) 30, 144, 387, 520, 588, 610, 956, 972
BspMAI CTGCAG 1 cut(s) 883
BspMI ACCTGC 3 cut(s) 724, 785, 1006
BspPI GGATC 2 cut(s) 965, 978
BspT107I GGYRCC 2 cut(s) 608, 954
BsrI ACTGG 3 cut(s) 520, 598, 946
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 2 cut(s) 970, 1114
BssNI GRCGYC 1 cut(s) 609
BssSI CACGAG 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 615
Bst2BI CACGAG 1 cut(s) 33
Bst2UI CCWGG 6 cut(s) 294, 528, 630, 840, 858, 1167
Bst4CI ACNGT 1 cut(s) 1153
Bst6I CTCTTC 1 cut(s) 64
BstACI GRCGYC 1 cut(s) 609
BstAPI GCANNNNNTGC 4 cut(s) 202, 710, 878, 887
BstC8I GCNNGC 4 cut(s) 822, 845, 852, 1086
BstDEI CTNAG 8 cut(s) 102, 411, 498, 582, 657, 771, 966, 1161
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 5 cut(s) 47, 207, 329, 379, 704
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 3 cut(s) 611, 794, 1024
BstKTI GATC 2 cut(s) 973, 1117
BstMAI GTCTC 3 cut(s) 909, 969, 994
BstMBI GATC 2 cut(s) 970, 1114
BstNI CCWGG 6 cut(s) 294, 528, 630, 840, 858, 1167
BstNSI RCATGY 1 cut(s) 196
BstPAI GACNNNNGTC 1 cut(s) 1188
BstSCI CCNGG 6 cut(s) 292, 526, 628, 838, 856, 1165
BstSFI CTRYAG 2 cut(s) 373, 879
BstSLI GKGCMC 1 cut(s) 1066
BstX2I RGATCY 1 cut(s) 970
BstXI CCANNNNNNTGG 1 cut(s) 605
BstYI RGATCY 1 cut(s) 970
BsuI GTATCC 1 cut(s) 516
BsuRI GGCC 3 cut(s) 181, 279, 297
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 5 cut(s) 47, 207, 329, 379, 704
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 3 cut(s) 708, 939, 1158
BveI ACCTGC 3 cut(s) 724, 785, 1006
Cac8I GCNNGC 4 cut(s) 822, 845, 852, 1086
CaiI CAGNNNCTG 3 cut(s) 758, 878, 1058
CfoI GCGC 3 cut(s) 611, 794, 1024
Cfr13I GGNCC 8 cut(s) 29, 83, 143, 278, 296, 323, 536, 587
CseI GACGC 1 cut(s) 951
Csp6I GTAC 4 cut(s) 99, 106, 766, 955
CviQI GTAC 4 cut(s) 99, 106, 766, 955
DdeI CTNAG 8 cut(s) 102, 411, 498, 582, 657, 771, 966, 1161
DinI GGCGCC 1 cut(s) 610
DpnI GATC 2 cut(s) 972, 1116
DpnII GATC 2 cut(s) 970, 1114
DraIII CACNNNGTG 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 1013
Eco130I CCWWGG 1 cut(s) 615
Eco24I GRGCYC 2 cut(s) 523, 1015
Eco47I GGWCC 6 cut(s) 29, 83, 143, 323, 536, 587
Eco53kI GAGCTC 1 cut(s) 1013
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 1186
EcoICRI GAGCTC 1 cut(s) 1013
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 6 cut(s) 292, 526, 628, 838, 856, 1165
EcoT14I CCWWGG 1 cut(s) 615
EcoT22I ATGCAT 1 cut(s) 706
EcoT38I GRGCYC 2 cut(s) 523, 1015
EgeI GGCGCC 1 cut(s) 610
EheI GGCGCC 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 615
Esp3I CGTCTC 2 cut(s) 909, 969
FaqI GGGAC 3 cut(s) 79, 600, 662
FauI CCCGC 2 cut(s) 1057, 1134
FauNDI CATATG 6 cut(s) 64, 118, 138, 478, 664, 700
FbaI TGATCA 1 cut(s) 1114
FokI GGATG 5 cut(s) 34, 214, 316, 366, 691
FriOI GRGCYC 2 cut(s) 523, 1015
FspBI CTAG 2 cut(s) 147, 825
FspI TGCGCA 1 cut(s) 1023
GlaI GCGC 3 cut(s) 610, 793, 1023
GsaI CCCAGC 7 cut(s) 55, 260, 526, 683, 755, 1062, 1084
GsuI CTGGAG 2 cut(s) 537, 999
HaeII RGCGCY 1 cut(s) 612
HaeIII GGCC 3 cut(s) 181, 279, 297
HapII CCGG 1 cut(s) 383
HgaI GACGC 1 cut(s) 951
HhaI GCGC 3 cut(s) 611, 794, 1024
Hin1I GRCGYC 1 cut(s) 609
Hin6I GCGC 3 cut(s) 609, 792, 1022
HinP1I GCGC 3 cut(s) 609, 792, 1022
HinfI GANTC 2 cut(s) 1184, 1189
HpaII CCGG 1 cut(s) 383
HphI GGTGA 1 cut(s) 1149
Hpy166II GTNNAC 4 cut(s) 32, 323, 539, 768
Hpy188I TCNGA 4 cut(s) 370, 648, 672, 922
Hpy188III TCNNGA 1 cut(s) 968
Hpy8I GTNNAC 4 cut(s) 32, 323, 539, 768
HpyAV CCTTC 2 cut(s) 291, 309
HpyCH4III ACNGT 1 cut(s) 1153
HpyCH4IV ACGT 1 cut(s) 902
HpyF3I CTNAG 8 cut(s) 102, 411, 498, 582, 657, 771, 966, 1161
HpySE526I ACGT 1 cut(s) 902
Hsp92I GRCGYC 1 cut(s) 609
HspAI GCGC 3 cut(s) 609, 792, 1022
KasI GGCGCC 1 cut(s) 608
KpnI GGTACC 1 cut(s) 958
Ksp22I TGATCA 1 cut(s) 1114
Kzo9I GATC 2 cut(s) 970, 1114
LweI GCATC 3 cut(s) 192, 388, 713
MaeI CTAG 2 cut(s) 147, 825
MaeII ACGT 1 cut(s) 902
MaeIII GTNAC 2 cut(s) 914, 1155
MalI GATC 2 cut(s) 972, 1116
MboI GATC 2 cut(s) 970, 1114
MboII GAAGA 2 cut(s) 51, 449
MflI RGATCY 1 cut(s) 970
MhlI GDGCHC 5 cut(s) 22, 43, 523, 1015, 1066
MluCI AATT 2 cut(s) 124, 346
Mly113I GGCGCC 1 cut(s) 609
MlyI GAGTC 2 cut(s) 1178, 1198
Mph1103I ATGCAT 1 cut(s) 706
MslI CAYNNNNRTG 4 cut(s) 216, 420, 432, 477
MspA1I CMGCKG 3 cut(s) 755, 1019, 1058
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 6 cut(s) 294, 528, 630, 840, 858, 1167
MvaI CCWGG 6 cut(s) 294, 528, 630, 840, 858, 1167
NarI GGCGCC 1 cut(s) 609
NcoI CCATGG 1 cut(s) 615
NdeI CATATG 6 cut(s) 64, 118, 138, 478, 664, 700
NdeII GATC 2 cut(s) 970, 1114
NlaIV GGNNCC 8 cut(s) 30, 144, 387, 520, 588, 610, 956, 972
NmuCI GTSAC 1 cut(s) 1155
NsbI TGCGCA 1 cut(s) 1023
NsiI ATGCAT 1 cut(s) 706
NspI RCATGY 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 1186
PaqCI CACCTGC 2 cut(s) 724, 1006
PcsI WCGNNNNNNNCGW 2 cut(s) 40, 1179
PflMI CCANNNNNTGG 2 cut(s) 515, 533
PleI GAGTC 2 cut(s) 1178, 1197
PluTI GGCGCC 1 cut(s) 612
PpsI GAGTC 2 cut(s) 1178, 1197
PpuMI RGGWCCY 1 cut(s) 143
PshAI GACNNNNGTC 1 cut(s) 1188
Psp124BI GAGCTC 1 cut(s) 1015
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 6 cut(s) 292, 526, 628, 838, 856, 1165
PspFI CCCAGC 7 cut(s) 51, 256, 522, 679, 751, 1058, 1080
PspGI CCWGG 6 cut(s) 292, 526, 628, 838, 856, 1165
PspN4I GGNNCC 8 cut(s) 30, 144, 387, 520, 588, 610, 956, 972
PspPI GGNCC 8 cut(s) 29, 83, 143, 278, 296, 323, 536, 587
PspPPI RGGWCCY 1 cut(s) 143
PspXI VCTCGAGB 1 cut(s) 1186
PstI CTGCAG 1 cut(s) 883
PstNI CAGNNNCTG 3 cut(s) 758, 878, 1058
PsuI RGATCY 1 cut(s) 970
PvuII CAGCTG 3 cut(s) 755, 1019, 1058
RsaI GTAC 4 cut(s) 100, 107, 767, 956
RsaNI GTAC 4 cut(s) 99, 106, 766, 955
RseI CAYNNNNRTG 4 cut(s) 216, 420, 432, 477
SacI GAGCTC 1 cut(s) 1015
Sau3AI GATC 2 cut(s) 970, 1114
Sau96I GGNCC 8 cut(s) 29, 83, 143, 278, 296, 323, 536, 587
SbfI CCTGCAGG 1 cut(s) 883
SchI GAGTC 2 cut(s) 1178, 1198
ScrFI CCNGG 6 cut(s) 294, 528, 630, 840, 858, 1167
SdaI CCTGCAGG 1 cut(s) 883
SduI GDGCHC 5 cut(s) 22, 43, 523, 1015, 1066
SfaNI GCATC 3 cut(s) 192, 388, 713
SfcI CTRYAG 2 cut(s) 373, 879
SfoI GGCGCC 1 cut(s) 610
Sfr274I CTCGAG 1 cut(s) 1186
SinI GGWCC 6 cut(s) 29, 83, 143, 323, 536, 587
SlaI CTCGAG 1 cut(s) 1186
SmiMI CAYNNNNRTG 4 cut(s) 216, 420, 432, 477
SmlI CTYRAG 1 cut(s) 1186
SmoI CTYRAG 1 cut(s) 1186
Sse8387I CCTGCAGG 1 cut(s) 883
Sse9I AATT 2 cut(s) 124, 346
SsiI CCGC 5 cut(s) 216, 638, 1050, 1127, 1137
SspDI GGCGCC 1 cut(s) 608
SspMI CTAG 2 cut(s) 147, 825
SstI GAGCTC 1 cut(s) 1015
StyD4I CCNGG 6 cut(s) 292, 526, 628, 838, 856, 1165
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 1 cut(s) 1153
TaiI ACGT 1 cut(s) 905
TaqI TCGA 2 cut(s) 788, 1187
TasI AATT 2 cut(s) 124, 346
TscAI CASTG 3 cut(s) 715, 946, 1158
TseFI GTSAC 1 cut(s) 1155
Tsp45I GTSAC 1 cut(s) 1155
TspDTI ATGAA 3 cut(s) 51, 450, 924
TspGWI ACGGA 1 cut(s) 726
TspRI CASTG 3 cut(s) 715, 946, 1158
Van91I CCANNNNNTGG 2 cut(s) 515, 533
VpaK11BI GGWCC 6 cut(s) 29, 83, 143, 323, 536, 587
XceI RCATGY 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XhoI CTCGAG 1 cut(s) 1186
XspI CTAG 2 cut(s) 147, 825
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.