Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8448611.1

Orthogroup ID

OG0008397

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1627

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8448611.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 872 bp

ccagagcaaatggtcaccaggagaagttggatgatactccgaaggagaatgatgaggaagaggtagtgcccggccctgcatttgttgaccttacggaaacagagattgctccttctcagcctgggtttgtggaccttacggaaacagcaacgaacgaacaactctttggcaccaatggtgagacaagtgacatccaaaagccttctgttgaggattctgtggtggatgctgctcaggaacctcctcaagaggagcctcaaccgcactccgctgaggaaggggactctgtccctgcgcaaccagagcaaggggacgctctctctgggcaacaagagaaaacagatactctacctgtgaaccaagagcaaggtgatactttctctgggcaacaggagcaaggggatgccttctctgcccaacaggatcaacttcctgaaaatgaggctatcacacacagaatggaggttcctaataataaggttggggttctgattggtaaggctggggatactattcgatacttgcaatacaattctagagcaaaaatccaaatcacaaaggatgctgatgcggatccatattctgcaacaaggcctgtagagataacaggaagtttggatagtgtcaccaaagctgaaaagcttataaatgctgttattgcagaggctgatgcggggggttctccttctctggtggctaggggcgttgctaccgcacaggctgttgcagctgcagaacaaattcagatacaagtaccaaatgaaaaggttggtttgataataggcagaatgggggacaccattaaaagtctgcaggccaaaacaggggcccgtatccaggtagtttattttgtatggcttgcctcgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

289

Amino Acids

30.89

Weight (kDa)

4.26

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33680 AT4G10070
fragaria_vesca	FvH4_2g35080 FvH4_2g35080 FvH4_2g35080
malus_domestica	MD08G1108100.v1.1 MD15G1088600.v1.1 MD15G1088800.v1.1
prunus_persica	Prupe.1G442700_v2.0.a1
pyrus_communis	pycom08g09010 pycom15g08310
rosa_chinensis	RchiOBHm_Chr6g0306891
rosa_laevigata	RLG00000010757
rosa_multiflora	Rmu_co8448611.1_g000001 Rmu_co8474845.1_g000001 Rmu_sc0018770.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161380
rosa_rugosa	Rorug06G0354100
rosa_samantha	Rh6AG465700 Rh6BG435100 Rh6CG480200 Rh6DG467100
rosa_wichuraiana	Rw6G040590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	646
Acc16I	TGCGCA	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	169
AciI	CCGC	5 cut(s)	262, 269, 571, 673, 713
AclWI	GGATC	3 cut(s)	431, 568, 581
AcsI	RAATTY	1 cut(s)	740
AfaI	GTAC	1 cut(s)	755
AfiI	CCNNNNNNNGG	3 cut(s)	307, 824, 837
AjnI	CCWGG	3 cut(s)	17, 120, 836
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	3 cut(s)	634, 642, 730
AluI	AGCT	3 cut(s)	634, 642, 730
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	3 cut(s)	431, 568, 581
AlwNI	CAGNNNCTG	1 cut(s)	667
AoxI	GGCC	4 cut(s)	72, 592, 815, 827
ApaI	GGGCCC	1 cut(s)	831
ApeKI	GCWGC	3 cut(s)	229, 727, 730
ApoI	RAATTY	1 cut(s)	740
Asp700I	GAANNNNTTC	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	4 cut(s)	73, 132, 827, 828
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	4 cut(s)	7, 190, 382, 618
AvaII	GGWCC	1 cut(s)	132
BaeGI	GKGCMC	2 cut(s)	71, 831
BamHI	GGATCC	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	831
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	3 cut(s)	216, 717, 739
BciT130I	CCWGG	3 cut(s)	19, 122, 838
BciVI	GTATCC	2 cut(s)	501, 844
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	536, 698
BfmI	CTRYAG	3 cut(s)	596, 731, 811
BfuI	GTATCC	2 cut(s)	501, 844
BisI	GCNGC	3 cut(s)	230, 728, 731
BlsI	GCNGC	3 cut(s)	231, 729, 732
Bme1390I	CCNGG	4 cut(s)	19, 71, 122, 838
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	4 cut(s)	73, 132, 827, 828
BmiI	GGNNCC	7 cut(s)	171, 239, 254, 467, 575, 828, 829
BmrFI	CCNGG	4 cut(s)	19, 71, 122, 838
BmsI	GCATC	5 cut(s)	216, 393, 552, 558, 660
Bpu10I	CCTNAGC	2 cut(s)	233, 272
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 824, 837
Bse8I	GATNNNNATC	1 cut(s)	572
BseBI	CCWGG	3 cut(s)	19, 122, 838
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	5 cut(s)	36, 191, 231, 408, 567
BseJI	GATNNNNATC	1 cut(s)	572
BseLI	CCNNNNNNNGG	3 cut(s)	307, 824, 837
BseMII	CTCAG	3 cut(s)	130, 247, 263
BseRI	GAGGAG	2 cut(s)	233, 265
BseSI	GKGCMC	2 cut(s)	71, 831
BseXI	GCAGC	3 cut(s)	216, 717, 739
BseYI	CCCAGC	1 cut(s)	502
BshFI	GGCC	4 cut(s)	74, 594, 817, 829
BshNI	GGYRCC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	4 cut(s)	274, 295, 325, 808
BslI	CCNNNNNNNGG	3 cut(s)	307, 824, 837
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	4 cut(s)	274, 295, 325, 808
BsnI	GGCC	4 cut(s)	74, 594, 817, 829
Bsp120I	GGGCCC	1 cut(s)	827
Bsp1286I	GDGCHC	2 cut(s)	71, 831
Bsp143I	GATC	2 cut(s)	423, 573
BspACI	CCGC	5 cut(s)	262, 269, 571, 673, 713
BspANI	GGCC	4 cut(s)	74, 594, 817, 829
BspCNI	CTCAG	3 cut(s)	129, 246, 264
BspLI	GGNNCC	7 cut(s)	171, 239, 254, 467, 575, 828, 829
BspMAI	CTGCAG	2 cut(s)	735, 815
BspPI	GGATC	3 cut(s)	431, 568, 581
BspT107I	GGYRCC	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	423, 573
Bst2UI	CCWGG	3 cut(s)	19, 122, 838
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	815, 860
BstDEI	CTNAG	3 cut(s)	116, 233, 272
BstEII	GGTNACC	1 cut(s)	13
BstF5I	GGATG	5 cut(s)	36, 191, 231, 408, 567
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	426, 576
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	423, 573
BstMWI	GCNNNNNNNGC	6 cut(s)	261, 303, 393, 412, 658, 727
BstNI	CCWGG	3 cut(s)	19, 122, 838
BstPI	GGTNACC	1 cut(s)	13
BstSCI	CCNGG	4 cut(s)	17, 69, 120, 836
BstSFI	CTRYAG	3 cut(s)	596, 731, 811
BstSLI	GKGCMC	2 cut(s)	71, 831
BstV1I	GCAGC	3 cut(s)	216, 717, 739
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
BsuI	GTATCC	2 cut(s)	501, 844
BsuRI	GGCC	4 cut(s)	74, 594, 817, 829
BtsCI	GGATG	5 cut(s)	36, 191, 231, 408, 567
Cac8I	GCNNGC	2 cut(s)	815, 860
CaiI	CAGNNNCTG	1 cut(s)	667
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	4 cut(s)	73, 132, 827, 828
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	754
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	3 cut(s)	116, 233, 272
DpnI	GATC	2 cut(s)	425, 575
DpnII	GATC	2 cut(s)	423, 573
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	132
Eco91I	GGTNACC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	827
EcoO65I	GGTNACC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	17, 120, 836
EcoT38I	GRGCYC	1 cut(s)	831
FaiI	YATR	3 cut(s)	579, 646, 855
FaqI	GGGAC	4 cut(s)	274, 295, 325, 808
FauI	CCCGC	1 cut(s)	666
Fnu4HI	GCNGC	3 cut(s)	230, 728, 731
FokI	GGATG	5 cut(s)	43, 178, 238, 415, 574
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	3 cut(s)	230, 728, 731
FspBI	CTAG	2 cut(s)	536, 698
FspI	TGCGCA	1 cut(s)	296
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	3 cut(s)	230, 728, 731
GsaI	CCCAGC	1 cut(s)	506
HaeIII	GGCC	4 cut(s)	74, 594, 817, 829
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	297
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	2 cut(s)	214, 283
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	4 cut(s)	7, 190, 382, 618
Hpy166II	GTNNAC	3 cut(s)	87, 132, 357
Hpy188I	TCNGA	3 cut(s)	41, 491, 746
Hpy188III	TCNNGA	4 cut(s)	235, 247, 433, 536
Hpy8I	GTNNAC	3 cut(s)	87, 132, 357
HpyAV	CCTTC	6 cut(s)	36, 122, 212, 271, 417, 695
HpyCH4V	TGCA	7 cut(s)	79, 525, 586, 661, 727, 733, 813
HpyF10VI	GCNNNNNNNGC	6 cut(s)	261, 303, 393, 412, 658, 727
HpyF3I	CTNAG	3 cut(s)	116, 233, 272
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	423, 573
LmnI	GCTCC	3 cut(s)	114, 252, 393
Lsp1109I	GCAGC	3 cut(s)	216, 717, 739
LweI	GCATC	5 cut(s)	216, 393, 552, 558, 660
MaeI	CTAG	2 cut(s)	536, 698
MaeIII	GTNAC	3 cut(s)	13, 187, 624
MalI	GATC	2 cut(s)	425, 575
MboI	GATC	2 cut(s)	423, 573
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	1 cut(s)	573
MhlI	GDGCHC	2 cut(s)	71, 831
MluCI	AATT	2 cut(s)	531, 740
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	740
MseI	TTAA	1 cut(s)	803
MspA1I	CMGCKG	2 cut(s)	271, 730
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	4 cut(s)	19, 71, 122, 838
MvaI	CCWGG	3 cut(s)	19, 122, 838
MwoI	GCNNNNNNNGC	6 cut(s)	261, 303, 393, 412, 658, 727
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	2 cut(s)	423, 573
NlaIV	GGNNCC	7 cut(s)	171, 239, 254, 467, 575, 828, 829
NmuCI	GTSAC	3 cut(s)	13, 187, 624
NsbI	TGCGCA	1 cut(s)	296
PceI	AGGCCT	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	740
PfeI	GAWTC	1 cut(s)	214
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	231, 729, 732
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PsiI	TTATAA	1 cut(s)	646
Psp6I	CCWGG	3 cut(s)	17, 120, 836
PspEI	GGTNACC	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	3 cut(s)	17, 120, 836
PspN4I	GGNNCC	7 cut(s)	171, 239, 254, 467, 575, 828, 829
PspOMI	GGGCCC	1 cut(s)	827
PspPI	GGNCC	4 cut(s)	73, 132, 827, 828
PstI	CTGCAG	2 cut(s)	735, 815
PstNI	CAGNNNCTG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	573
PsyI	GACNNNGTC	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
SaqAI	TTAA	1 cut(s)	803
SatI	GCNGC	3 cut(s)	230, 728, 731
Sau3AI	GATC	2 cut(s)	423, 573
Sau96I	GGNCC	4 cut(s)	73, 132, 827, 828
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	4 cut(s)	19, 71, 122, 838
SduI	GDGCHC	2 cut(s)	71, 831
SfaNI	GCATC	5 cut(s)	216, 393, 552, 558, 660
SfcI	CTRYAG	3 cut(s)	596, 731, 811
SinI	GGWCC	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	531, 740
SseBI	AGGCCT	1 cut(s)	594
SsiI	CCGC	5 cut(s)	262, 269, 571, 673, 713
SspMI	CTAG	2 cut(s)	536, 698
StuI	AGGCCT	1 cut(s)	594
StyD4I	CCNGG	4 cut(s)	17, 69, 120, 836
TaqI	TCGA	1 cut(s)	516
TasI	AATT	2 cut(s)	531, 740
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	803
Tru9I	TTAA	1 cut(s)	803
TseFI	GTSAC	3 cut(s)	13, 187, 624
TseI	GCWGC	3 cut(s)	229, 727, 730
Tsp45I	GTSAC	3 cut(s)	13, 187, 624
TspDTI	ATGAA	1 cut(s)	776
TspGWI	ACGGA	2 cut(s)	109, 154
Tth111I	GACNNNGTC	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	1 cut(s)	740
XbaI	TCTAGA	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	740
XspI	CTAG	2 cut(s)	536, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.