Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013808

Physical Location & Seq

Genomic Coordinates Reverse (-)

7009769 .. 7011406

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCTTCGCTCCTCAATTCGACTTCTCTATATAAGAAGAACCAGTCCTCTGCTTCGAAGTTTATCATCATCATCATCATCATCATCATCAAAACGATTCGATTCTGCGAAACCACTTTTCAATTCTCATCGGATTATTTCTCTTCCAATTTCTACAACGGGAGCTAAACTATCTAGATCGGAGCATTCAATGGCTGCTTCTTCCGAACCCAAATCTCTTTACGATTTCACCGTCAAGGATGCTAAGGGAAACGATGTTGATCTAAGCATCTACAAAGGGAAGGTTCTTTTGATTGTGAACGTTGCTTCTCAATGTGGCTTGACTAATTCGAATTATACTGAGCTTGCGCAGCTGTATGAGAAGTACAAAGGCCATGGTTTCGAGATTCTTGCGTTTCCGTGTAACCAGTTTGGGAATCAAGAGCCTGGTACTAATGAAGAGATTGTTCAGTTTGCTTGTACTCGTTTCAAGGCTGAGTACCCGATTTTCGACAAGGTTGATGTTAACGGTGACAAAGCTGCCCCAGTCTACAAGTTTCTGAAATCAAGCAAAGGCGGGCTCTTTGGAGACGGCATTAAGTGGAACTTCGCAAAGTTCTTGGTTGACAAAGATGGAAATGTTGTCGATCGTTTCGCACCAACTACCTCACCTCTCAGCATTGAGAAGGATGTGAAGAAGTTGTTGGGAGTTACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0004602 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

232

Amino Acids

25.58

Weight (kDa)

9.38

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	73 - 181	2.9e-43	Glutathione peroxidase
AhpC-TSA	PF00578	74 - 136	7.5e-08	AhpC/TSA family
Redoxin	PF08534	75 - 216	1.1e-07	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11600
fragaria_vesca	FvH4_5g02130
malus_domestica	MD06G1081300.v1.1 MD14G1103200.v1.1
prunus_persica	Prupe.5G098400_v2.0.a1
pyrus_communis	pycom06g07830
rosa_chinensis	RchiOBHm_Chr7g0198001
rosa_laevigata	RLG00000003894
rosa_multiflora	Rmu_sc0000221.1_g000037 Rmu_sc0001082.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258020
rosa_rugosa	Rorug07G0045200
rosa_samantha	Rh7AG168700 Rh7BG171800 Rh7CG178200 Rh7DG171000
rosa_wichuraiana	Rw7G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	348
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	1 cut(s)	555
AclI	AACGTT	1 cut(s)	300
AfaI	GTAC	4 cut(s)	365, 430, 460, 479
AgsI	TTSAA	3 cut(s)	121, 189, 469
AjnI	CCWGG	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AluBI	AGCT	4 cut(s)	164, 343, 352, 518
AluI	AGCT	4 cut(s)	164, 343, 352, 518
Alw26I	GTCTC	1 cut(s)	561
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	3 cut(s)	194, 349, 518
AspLEI	GCGC	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	220, 521, 639
AsuII	TTCGAA	2 cut(s)	55, 329
BanII	GRGCYC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	181, 361, 505
BccI	CCATC	1 cut(s)	605
BceAI	ACGGC	1 cut(s)	586
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	3 cut(s)	195, 350, 519
BlsI	GCNGC	3 cut(s)	196, 351, 520
Bme1390I	CCNGG	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	229, 276
BmuI	ACTGGG	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	2 cut(s)	55, 329
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	373
Bse1I	ACTGG	3 cut(s)	42, 406, 524
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	244, 673
BseJI	GATNNNNATC	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	330, 465, 667
BseNI	ACTGG	3 cut(s)	42, 406, 524
BseXI	GCAGC	3 cut(s)	181, 361, 505
Bsh1285I	CGRYCG	1 cut(s)	628
BshFI	GGCC	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	561
BsmBI	CGTCTC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	372
Bsp119I	TTCGAA	2 cut(s)	55, 329
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	176, 259, 625
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	1 cut(s)	555
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	3 cut(s)	331, 466, 666
BspT104I	TTCGAA	2 cut(s)	55, 329
BsrI	ACTGG	3 cut(s)	42, 406, 524
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	3 cut(s)	176, 259, 625
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	232, 509
Bst6I	CTCTTC	2 cut(s)	147, 432
BstBI	TTCGAA	2 cut(s)	55, 329
BstC8I	GCNNGC	2 cut(s)	345, 557
BstDEI	CTNAG	5 cut(s)	243, 263, 339, 474, 653
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	2 cut(s)	244, 673
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	3 cut(s)	179, 262, 628
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	3 cut(s)	176, 259, 625
BstMCI	CGRYCG	1 cut(s)	628
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstV1I	GCAGC	3 cut(s)	181, 361, 505
BsuRI	GGCC	1 cut(s)	372
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	244, 673
Cac8I	GCNNGC	2 cut(s)	345, 557
CfoI	GCGC	1 cut(s)	349
Csp6I	GTAC	4 cut(s)	364, 429, 459, 478
CviAII	CATG	1 cut(s)	374
CviQI	GTAC	4 cut(s)	364, 429, 459, 478
DdeI	CTNAG	5 cut(s)	243, 263, 339, 474, 653
DpnI	GATC	3 cut(s)	178, 261, 627
DpnII	GATC	3 cut(s)	176, 259, 625
Eam1104I	CTCTTC	2 cut(s)	147, 432
EarI	CTCTTC	2 cut(s)	147, 432
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	561
FaeI	CATG	1 cut(s)	377
FaiI	YATR	5 cut(s)	30, 32, 336, 357, 375
FalI	AAGNNNNNCTT	2 cut(s)	569, 601
FatI	CATG	1 cut(s)	373
FauI	CCCGC	1 cut(s)	548
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	3 cut(s)	195, 350, 519
FokI	GGATG	2 cut(s)	251, 680
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	3 cut(s)	195, 350, 519
FspBI	CTAG	1 cut(s)	174
FspI	TGCGCA	1 cut(s)	348
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	3 cut(s)	195, 350, 519
HaeIII	GGCC	1 cut(s)	372
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	505, 604
HindII	GTYRAC	2 cut(s)	505, 604
HinfI	GANTC	4 cut(s)	96, 101, 385, 415
HpaI	GTTAAC	1 cut(s)	505
HphI	GGTGA	3 cut(s)	220, 521, 639
Hpy166II	GTNNAC	4 cut(s)	298, 505, 529, 604
Hpy188I	TCNGA	4 cut(s)	132, 181, 205, 540
Hpy188III	TCNNGA	3 cut(s)	174, 382, 419
Hpy8I	GTNNAC	4 cut(s)	298, 505, 529, 604
HpyAV	CCTTC	2 cut(s)	274, 658
HpyCH4III	ACNGT	2 cut(s)	232, 509
HpyCH4IV	ACGT	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	5 cut(s)	243, 263, 339, 474, 653
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	347
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	176, 259, 625
LmnI	GCTCC	3 cut(s)	14, 161, 181
LpnPI	CCDG	5 cut(s)	55, 411, 419, 438, 537
Lsp1109I	GCAGC	3 cut(s)	181, 361, 505
LweI	GCATC	2 cut(s)	229, 276
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	3 cut(s)	401, 509, 688
MalI	GATC	3 cut(s)	178, 261, 627
MboI	GATC	3 cut(s)	176, 259, 625
MboII	GAAGA	5 cut(s)	48, 134, 192, 449, 685
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	5 cut(s)	15, 121, 147, 325, 331
MnlI	CCTC	4 cut(s)	22, 57, 655, 660
MseI	TTAA	3 cut(s)	504, 576, 697
MspA1I	CMGCKG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	349
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	176, 259, 625
NlaIII	CATG	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	509
NsbI	TGCGCA	1 cut(s)	348
NspV	TTCGAA	2 cut(s)	55, 329
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	4 cut(s)	96, 101, 385, 415
PkrI	GCNGC	3 cut(s)	196, 351, 520
Ple19I	CGATCG	1 cut(s)	628
Psp1406I	AACGTT	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PvuI	CGATCG	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	4 cut(s)	365, 430, 460, 479
RsaNI	GTAC	4 cut(s)	364, 429, 459, 478
SaqAI	TTAA	3 cut(s)	504, 576, 697
SatI	GCNGC	3 cut(s)	195, 350, 519
Sau3AI	GATC	3 cut(s)	176, 259, 625
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	561
SetI	ASST	9 cut(s)	166, 285, 303, 345, 354, 498, 520, 647, 652
SfaNI	GCATC	2 cut(s)	229, 276
SfuI	TTCGAA	2 cut(s)	55, 329
Sse9I	AATT	5 cut(s)	15, 121, 147, 325, 331
SsiI	CCGC	1 cut(s)	555
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	232, 509
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	7 cut(s)	19, 55, 99, 329, 381, 489, 624
TasI	AATT	5 cut(s)	15, 121, 147, 325, 331
TatI	WGTACW	2 cut(s)	363, 458
TfiI	GAWTC	4 cut(s)	96, 101, 385, 415
Tru1I	TTAA	3 cut(s)	504, 576, 697
Tru9I	TTAA	3 cut(s)	504, 576, 697
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	3 cut(s)	194, 349, 518
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	387
XbaI	TCTAGA	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.