Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013808

Physical Location & Seq

Genomic Coordinates Forward (+)

19934610 .. 19937046

Gene Structure 2437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1081300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCTCTGCATCTGCAATTCTACTCGTTTTCTCTTCCGACGAAAACTCACCGTCGCCGCTTCATCTGCTTCTCAGCTTCTGCAAAAGCACTTCTCGGCCGATTCCTTGCAGACCCCTTTGCCACCGTCGCGGATTTCTCTGTTTTCGCCGTTGATCAAGGTCGAGTTTTCAAGCCCGGTTGCGTCTACTTTGCTGTTGAATCGTACAATGGCTGGCCATTCCGAGAGTAAATCAATCCACGATTTCACTGTCAAGGATGCCAAGGGTAATGATGTTGATCTCAGCACCTACAAAGGGAAGGTCCTTCTGATCGTTAACGTTGCGTCGCAATGTGGCTTGACTAATTCAAACTACACAGAGTTGGCTCAGTTGTATGAGAAATACAAAACTCAAGGTTTGGAAATCTTGGCATTCCCATGCAACCAGTTTGGAGCCCAGGAGCCAGGGACAAATGACGAGATTGTAGAGTTTGCCTGCACTCGCTTCAAGGCTGAGTATCCCATCTTTGACAAGGTGGATGTGAATGGCGACAATGCTGCTCCGATTTACAAATTCTTGAAGTCGAGCAAGGGTGGACTGTTTGGTGACAGCATCAAGTGGAACTTCTCCAAGTTCCTGGTTGACAAAGAAGGGAAAGTCGTTGACCGTTATGCCCCTACAACTTCTCCTCTTAGCATTGAGAAGGATGTGAAGAAACTGCTGGGGGTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0004602 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

238

Amino Acids

26.15

Weight (kDa)

8.85

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	77 - 222	4.6e-08	Redoxin
AhpC-TSA	PF00578	78 - 142	5.7e-09	AhpC/TSA family
GSHPx	PF00255	79 - 187	1.3e-42	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11600
fragaria_vesca	FvH4_5g02130
malus_domestica	MD06G1081300.v1.1 MD14G1103200.v1.1
prunus_persica	Prupe.5G098400_v2.0.a1
pyrus_communis	pycom06g07830
rosa_chinensis	RchiOBHm_Chr7g0198001
rosa_laevigata	RLG00000003894
rosa_multiflora	Rmu_sc0000221.1_g000037 Rmu_sc0001082.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258020
rosa_rugosa	Rorug07G0045200
rosa_samantha	Rh7AG168700 Rh7BG171800 Rh7CG178200 Rh7DG171000
rosa_wichuraiana	Rw7G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	185
AccII	CGCG	1 cut(s)	130
AciI	CCGC	2 cut(s)	57, 130
AclI	AACGTT	1 cut(s)	318
AcoI	YGGCCR	2 cut(s)	96, 214
AcsI	RAATTY	1 cut(s)	551
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	5 cut(s)	171, 199, 348, 487, 559
AjnI	CCWGG	3 cut(s)	435, 442, 615
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	79
AoxI	GGCC	2 cut(s)	96, 214
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	551
ArsI	GACNNNNNNTTYG	2 cut(s)	285, 317
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	40, 596
AvaII	GGWCC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	3 cut(s)	437, 444, 617
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	2 cut(s)	57, 537
BlsI	GCNGC	2 cut(s)	58, 538
Bme1390I	CCNGG	4 cut(s)	176, 437, 444, 617
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	2 cut(s)	433, 441
BmrFI	CCNGG	4 cut(s)	176, 437, 444, 617
BmsI	GCATC	3 cut(s)	18, 247, 600
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	261, 435, 443
BsaXI	ACNNNNNCTCC	2 cut(s)	649, 679
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	3 cut(s)	437, 444, 617
BseDI	CCNNGG	3 cut(s)	261, 435, 443
BseGI	GGATG	3 cut(s)	262, 523, 691
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	4 cut(s)	86, 295, 380, 483
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	657
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	523
BseYI	CCCAGC	1 cut(s)	700
BsgI	GTGCAG	1 cut(s)	460
Bsh1236I	CGCG	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	98, 216
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	98, 216
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	153, 277, 309
BspACI	CCGC	2 cut(s)	57, 130
BspANI	GGCC	2 cut(s)	98, 216
BspCNI	CTCAG	4 cut(s)	85, 294, 379, 484
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	433, 441
BsrDI	GCAATG	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	3 cut(s)	261, 435, 443
BssMI	GATC	3 cut(s)	153, 277, 309
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	3 cut(s)	437, 444, 617
Bst4CI	ACNGT	5 cut(s)	52, 126, 250, 579, 647
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	214, 475
BstDEI	CTNAG	5 cut(s)	72, 281, 366, 492, 671
BstF5I	GGATG	3 cut(s)	262, 523, 691
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	3 cut(s)	156, 280, 312
BstMBI	GATC	3 cut(s)	153, 277, 309
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 127
BstNI	CCWGG	3 cut(s)	437, 444, 617
BstSCI	CCNGG	4 cut(s)	174, 435, 442, 615
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	523
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	98, 216
BtsCI	GGATG	3 cut(s)	262, 523, 691
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	214, 475
CaiI	CAGNNNCTG	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	301
CseI	GACGC	2 cut(s)	171, 312
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	2 cut(s)	417, 711
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	5 cut(s)	72, 281, 366, 492, 671
DpnI	GATC	3 cut(s)	155, 279, 311
DpnII	GATC	3 cut(s)	153, 277, 309
EaeI	YGGCCR	2 cut(s)	96, 214
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	301
Eco52I	CGGCCG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	3 cut(s)	435, 442, 615
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	420, 714
FaiI	YATR	4 cut(s)	375, 418, 651, 712
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	2 cut(s)	416, 710
FbaI	TGATCA	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	57, 537
FokI	GGATG	3 cut(s)	269, 530, 698
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	2 cut(s)	57, 537
GluI	GCNGC	2 cut(s)	57, 537
GsaI	CCCAGC	1 cut(s)	704
HaeIII	GGCC	2 cut(s)	98, 216
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	2 cut(s)	171, 312
Hin1II	CATG	2 cut(s)	420, 714
HincII	GTYRAC	3 cut(s)	316, 622, 643
HindII	GTYRAC	3 cut(s)	316, 622, 643
HinfI	GANTC	2 cut(s)	101, 199
HpaI	GTTAAC	1 cut(s)	316
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	2 cut(s)	40, 596
Hpy166II	GTNNAC	5 cut(s)	186, 316, 575, 622, 643
Hpy188I	TCNGA	4 cut(s)	38, 223, 309, 543
Hpy188III	TCNNGA	1 cut(s)	556
Hpy8I	GTNNAC	5 cut(s)	186, 316, 575, 622, 643
Hpy99I	CGWCG	4 cut(s)	42, 56, 130, 328
HpyAV	CCTTC	4 cut(s)	292, 314, 623, 676
HpyCH4III	ACNGT	5 cut(s)	52, 126, 250, 579, 647
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	6 cut(s)	9, 15, 82, 109, 420, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 127
HpyF3I	CTNAG	5 cut(s)	72, 281, 366, 492, 671
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	420, 714
Ksp22I	TGATCA	1 cut(s)	153
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	153, 277, 309
LmnI	GCTCC	3 cut(s)	431, 439, 544
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	3 cut(s)	18, 247, 600
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	3 cut(s)	155, 279, 311
MboI	GATC	3 cut(s)	153, 277, 309
MboII	GAAGA	2 cut(s)	25, 703
MhlI	GDGCHC	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	3 cut(s)	16, 343, 551
MluNI	TGGCCA	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	1 cut(s)	678
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	415
Msp20I	TGGCCA	1 cut(s)	216
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	4 cut(s)	176, 437, 444, 617
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	3 cut(s)	437, 444, 617
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	65, 127
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	3 cut(s)	153, 277, 309
NlaIII	CATG	2 cut(s)	420, 714
NlaIV	GGNNCC	2 cut(s)	433, 441
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	584
PctI	GAATGC	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	101, 199
PkrI	GCNGC	2 cut(s)	58, 538
PpuMI	RGGWCCY	1 cut(s)	301
Psp1406I	AACGTT	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	3 cut(s)	435, 442, 615
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	3 cut(s)	435, 442, 615
PspN4I	GGNNCC	2 cut(s)	433, 441
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	415
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	2 cut(s)	57, 537
Sau3AI	GATC	3 cut(s)	153, 277, 309
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	4 cut(s)	176, 437, 444, 617
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	7 cut(s)	78, 162, 290, 303, 321, 397, 516
SfaNI	GCATC	3 cut(s)	18, 247, 600
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	16, 343, 551
SsiI	CCGC	2 cut(s)	57, 130
StyD4I	CCNGG	4 cut(s)	174, 435, 442, 615
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	5 cut(s)	52, 126, 250, 579, 647
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	162, 563
TasI	AATT	3 cut(s)	16, 343, 551
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	101, 199
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.