Rorug07G0045200

Belongs to the glutathione peroxidase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
3300623 .. 3305416
4794 bp
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UTR
Exon/CDS
Intron
Rorug07G0045200.1

Sequence Viewer

Length: 564 bp
ATGGTGGGCGACCAATTCGGCTTGGAATTGAAGCACTGGGAGAAAATCTCCAAAACCCAATTCAAGGAATGGTCAATGGTAGCCATCAGAGACTCCAACTCCTCCGTTTTCCCTCCAATTAATCACGAAAACCTCCACCTCCCGACCTCCCCATCACTGTCGTCTTCTTCCTCCTCGTCGCTCTCGTCGTTTTCGCCGTCCGATTCCGACGAATCGGGCCCGGTTTCGCCGAAGAAGCCCGATACCCAGGTCGGAAAATGCGGCGAATCGAGGAGCTGGGTGGGTTTTGGGGTTGGGTTACTGCGCTCTAAGGTTTTGGGGATTGGTTCGTTGATTGGGTGGGAGAAAGTTTGGTGCTTTGGTTCTGGGGCGGGCATTGTGGCGGTGGTGTTTATGGTGTGGTCGTTTTACTTGCGAGTGAGGCGGAGGCGGTATCGGAAGCGTTCCGATTTGATTATCAAACAGAAAGATGAGAAAATTAATAAGCTGCTGCACCAAATCGCGCAAATGAATGAAGTACTGGTGGCTCGGCATAGAGCTCTGGCTTCCAAACTGGCTAATTGA

Protein Analysis

187

Amino Acids

20.89

Weight (kDa)

9.96

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013808)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11600
fragaria_vesca FvH4_5g02130
malus_domestica MD06G1081300.v1.1 MD14G1103200.v1.1
prunus_persica Prupe.5G098400_v2.0.a1
pyrus_communis pycom06g07830
rosa_chinensis RchiOBHm_Chr7g0198001
rosa_laevigata RLG00000003894
rosa_multiflora Rmu_sc0000221.1_g000037 Rmu_sc0001082.1_g000005
rosa_roxburghii Rroxscaffold_3G00258020
rosa_rugosa Rorug07G0045200
rosa_samantha Rh7AG168700 Rh7BG171800 Rh7CG178200 Rh7DG171000
rosa_wichuraiana Rw7G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 503
AciI CCGC 5 cut(s) 261, 371, 383, 424, 430
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 31, 64
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 3 cut(s) 276, 487, 539
AluI AGCT 3 cut(s) 276, 487, 539
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 1 cut(s) 217
ApaI GGGCCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 487, 490
AseI ATTAAT 2 cut(s) 120, 480
AspLEI GCGC 2 cut(s) 306, 505
AspS9I GGNCC 2 cut(s) 217, 218
AsuC2I CCSGG 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 221
BaeI ACNNNNGTAYC 2 cut(s) 234, 267
BanII GRGCYC 2 cut(s) 221, 541
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 2 cut(s) 474, 477
BccI CCATC 2 cut(s) 92, 160
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 84
BisI GCNGC 3 cut(s) 262, 488, 491
BlsI GCNGC 3 cut(s) 263, 489, 492
BmcAI AGTACT 1 cut(s) 519
Bme1390I CCNGG 2 cut(s) 221, 248
BmgT120I GGNCC 2 cut(s) 217, 218
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 2 cut(s) 221, 248
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuMI CCSGG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 3 cut(s) 41, 525, 558
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 3 cut(s) 41, 525, 558
BseRI GAGGAG 3 cut(s) 91, 163, 286
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 474, 477
BseYI CCCAGC 1 cut(s) 276
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 1 cut(s) 503
BshFI GGCC 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 219
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 221, 541
BspACI CCGC 5 cut(s) 261, 371, 383, 424, 430
BspANI GGCC 1 cut(s) 219
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 1 cut(s) 219
BsrI ACTGG 3 cut(s) 41, 525, 558
BssECI CCNNGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 503
BstHHI GCGC 2 cut(s) 306, 505
BstMAI GTCTC 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 235, 421
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 219, 246
BstSLI GKGCMC 1 cut(s) 221
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 2 cut(s) 474, 477
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 34, 155
Cac8I GCNNGC 1 cut(s) 373
CfoI GCGC 2 cut(s) 306, 505
Cfr13I GGNCC 2 cut(s) 217, 218
Csp6I GTAC 1 cut(s) 518
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 1 cut(s) 309
EciI GGCGGA 1 cut(s) 439
Ecl136II GAGCTC 1 cut(s) 539
Eco24I GRGCYC 2 cut(s) 221, 541
Eco53kI GAGCTC 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 2 cut(s) 221, 541
FaiI YATR 2 cut(s) 395, 534
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 3 cut(s) 262, 488, 491
FriOI GRGCYC 2 cut(s) 221, 541
Fsp4HI GCNGC 3 cut(s) 262, 488, 491
GlaI GCGC 2 cut(s) 305, 504
GluI GCNGC 3 cut(s) 262, 488, 491
GsaI CCCAGC 1 cut(s) 280
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 221
HhaI GCGC 2 cut(s) 306, 505
Hin6I GCGC 2 cut(s) 304, 503
HinP1I GCGC 2 cut(s) 304, 503
HinfI GANTC 4 cut(s) 92, 203, 212, 266
HpaII CCGG 1 cut(s) 221
Hpy188I TCNGA 6 cut(s) 89, 202, 208, 254, 438, 448
Hpy188III TCNNGA 2 cut(s) 125, 142
Hpy99I CGWCG 3 cut(s) 181, 190, 212
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 421
HpyF3I CTNAG 1 cut(s) 309
HspAI GCGC 2 cut(s) 304, 503
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 9 cut(s) 22, 233, 234, 260, 262, 351, 506, 527, 539
Lsp1109I GCAGC 2 cut(s) 474, 477
MaeIII GTNAC 1 cut(s) 297
MboII GAAGA 3 cut(s) 156, 159, 244
MhlI GDGCHC 2 cut(s) 221, 541
MluCI AATT 6 cut(s) 14, 26, 59, 117, 477, 559
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 3 cut(s) 120, 231, 232
MseI TTAA 2 cut(s) 120, 480
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 221, 248
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 235, 421
NciI CCSGG 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 219
NmeAIII GCCGAG 1 cut(s) 508
PcsI WCGNNNNNNNCGW 3 cut(s) 182, 185, 194
PfeI GAWTC 3 cut(s) 203, 212, 266
PkrI GCNGC 3 cut(s) 263, 489, 492
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PshBI ATTAAT 2 cut(s) 120, 480
Psp124BI GAGCTC 1 cut(s) 541
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 219
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 217, 218
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
SacI GAGCTC 1 cut(s) 541
SaqAI TTAA 2 cut(s) 120, 480
SatI GCNGC 3 cut(s) 262, 488, 491
Sau96I GGNCC 2 cut(s) 217, 218
ScaI AGTACT 1 cut(s) 519
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 221, 248
SduI GDGCHC 2 cut(s) 221, 541
SetI ASST 8 cut(s) 135, 141, 149, 252, 278, 315, 489, 541
Sse9I AATT 6 cut(s) 14, 26, 59, 117, 477, 559
SsiI CCGC 5 cut(s) 261, 371, 383, 424, 430
SstI GAGCTC 1 cut(s) 541
StyD4I CCNGG 2 cut(s) 219, 246
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 269
TasI AATT 6 cut(s) 14, 26, 59, 117, 477, 559
TatI WGTACW 1 cut(s) 517
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 3 cut(s) 203, 212, 266
Tru1I TTAA 2 cut(s) 120, 480
Tru9I TTAA 2 cut(s) 120, 480
TscAI CASTG 2 cut(s) 41, 162
TseI GCWGC 2 cut(s) 487, 490
TspDTI ATGAA 2 cut(s) 524, 528
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 2 cut(s) 41, 162
VspI ATTAAT 2 cut(s) 120, 480
ZrmI AGTACT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.