FvH4_5g02130

Belongs to the glutathione peroxidase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
1332620 .. 1334445
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02130.t1

Sequence Viewer

Length: 687 bp
ATGCTCTGTTCTTCTTCTCGTCTTGTCTTCCGTAGAAACCTCGCCGTCGCTGCAGCTCTTGTTTTCCCCAGGCAATTCTCAACCGTTTCCAAGAATACCCTCTTGCGTCCCTCGTGTTTTCCCTCCATCAAAGCACAGTCTTTCAACCCAGTTTCGTCTTTTCAATTCAATCGATCAATGGCTAGCCAATCCTCCCAACCAAAAACCGTCCACGACTTCACTGTCAAGGATGCCAGGGGCAATGACGTTGATCTGAGCACATACAAAGGAAAGGTCCTTTTGATTGTCAATGTCGCATCACAATGTGGGTTGACCAATTCAAACTACACAGAACTGGCTCAGTTGTACGAGAAGTACAAAACTCAAGGTTTGGAGATTTTGGCATTCCCGTGCAATCAGTTTGGAGCTCAGGAGCCAGGGTCTAATGACGAGATTGTGGAGTTTGCTTGCACTCGCTTTAAGGCCGAGTATCCCATCTTTGACAAGGTGGATGTGAATGGTGACAAAGCCACTCCATTGTATAAGTTCTTGAAGTCGAGCAAAGGTGGTCTCTTTGGTGACAGCATCAAGTGGAACTTCTCCAAGTTCCTTGTTGACAAGGAAGGGAATGTTGTCAACCGTTATGCCCCAACAACTACTCCTCTTAGCATCGAGAAGGATGTGAAGAAGCTGTTGGGGGTTGCATGA

Protein Analysis

229

Amino Acids

25.3

Weight (kDa)

9.31

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA PF00578 69 - 133 1.1e-08 AhpC/TSA family
Redoxin PF08534 69 - 211 1.5e-07 Redoxin
GSHPx PF00255 70 - 178 1.2e-42 Glutathione peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013808)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11600
fragaria_vesca FvH4_5g02130
malus_domestica MD06G1081300.v1.1 MD14G1103200.v1.1
prunus_persica Prupe.5G098400_v2.0.a1
pyrus_communis pycom06g07830
rosa_chinensis RchiOBHm_Chr7g0198001
rosa_laevigata RLG00000003894
rosa_multiflora Rmu_sc0000221.1_g000037 Rmu_sc0001082.1_g000005
rosa_roxburghii Rroxscaffold_3G00258020
rosa_rugosa Rorug07G0045200
rosa_samantha Rh7AG168700 Rh7BG171800 Rh7CG178200 Rh7DG171000
rosa_wichuraiana Rw7G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 2 cut(s) 347, 356
AgsI TTSAA 5 cut(s) 145, 164, 169, 321, 532
AjnI CCWGG 3 cut(s) 68, 233, 415
AjuI GAANNNNNNNTTGG 1 cut(s) 656
AluBI AGCT 3 cut(s) 56, 407, 670
AluI AGCT 3 cut(s) 56, 407, 670
Alw21I GWGCWC 2 cut(s) 260, 409
Alw26I GTCTC 1 cut(s) 554
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 50, 53
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 512, 569
AsuNHI GCTAGC 1 cut(s) 182
AvaII GGWCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 409
BauI CACGAG 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 2 cut(s) 260, 409
BbvI GCAGC 2 cut(s) 37, 65
BccI CCATC 2 cut(s) 134, 482
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 3 cut(s) 70, 235, 417
BciVI GTATCC 1 cut(s) 480
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 51
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme1390I CCNGG 3 cut(s) 70, 235, 417
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 3 cut(s) 70, 235, 417
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 4 cut(s) 220, 305, 573, 657
BmtI GCTAGC 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 19
Bpu10I CCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 348
Bsa29I ATCGAT 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 3 cut(s) 68, 234, 416
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 622, 652
Bse1I ACTGG 2 cut(s) 149, 339
Bse3DI GCAATG 1 cut(s) 247
BseBI CCWGG 3 cut(s) 70, 235, 417
BseCI ATCGAT 1 cut(s) 172
BseDI CCNNGG 3 cut(s) 68, 234, 416
BseGI GGATG 3 cut(s) 235, 496, 664
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 245, 353, 422
BseNI ACTGG 2 cut(s) 149, 339
BseRI GAGGAG 1 cut(s) 630
BseXI GCAGC 2 cut(s) 37, 65
BshFI GGCC 1 cut(s) 464
BshVI ATCGAT 1 cut(s) 172
BsiHKAI GWGCWC 2 cut(s) 260, 409
BslFI GGGAC 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 1 cut(s) 464
Bso31I GGTCTC 1 cut(s) 554
Bsp1286I GDGCHC 2 cut(s) 260, 409
Bsp143I GATC 2 cut(s) 173, 250
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 3 cut(s) 246, 352, 421
BspDI ATCGAT 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 414
BspMAI CTGCAG 1 cut(s) 55
BspOI GCTAGC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 247
BsrI ACTGG 2 cut(s) 149, 339
BssECI CCNNGG 3 cut(s) 68, 234, 416
BssMI GATC 2 cut(s) 173, 250
BssSI CACGAG 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 112
Bst2UI CCWGG 3 cut(s) 70, 235, 417
Bst4CI ACNGT 5 cut(s) 85, 138, 208, 223, 620
BstC8I GCNNGC 2 cut(s) 184, 448
BstDEI CTNAG 4 cut(s) 254, 339, 408, 644
BstF5I GGATG 3 cut(s) 235, 496, 664
BstKTI GATC 2 cut(s) 176, 253
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 2 cut(s) 173, 250
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 3 cut(s) 70, 235, 417
BstSCI CCNGG 3 cut(s) 68, 233, 415
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 37, 65
BstV2I GAAGAC 1 cut(s) 19
Bsu15I ATCGAT 1 cut(s) 172
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 1 cut(s) 464
BsuTUI ATCGAT 1 cut(s) 172
BtsCI GGATG 3 cut(s) 235, 496, 664
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 184, 448
Cfr13I GGNCC 1 cut(s) 274
ClaI ATCGAT 1 cut(s) 172
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 346, 355
CviAII CATG 1 cut(s) 684
CviJI RGCY 9 cut(s) 56, 182, 186, 338, 407, 415, 464, 509, 670
CviKI_1 RGCY 9 cut(s) 56, 182, 186, 338, 407, 415, 464, 509, 670
CviQI GTAC 2 cut(s) 346, 355
DdeI CTNAG 4 cut(s) 254, 339, 408, 644
DpnI GATC 2 cut(s) 175, 252
DpnII GATC 2 cut(s) 173, 250
DraIII CACNNNGTG 1 cut(s) 305
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 407
EcoICRI GAGCTC 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 3 cut(s) 68, 233, 415
EcoT38I GRGCYC 1 cut(s) 409
FaeI CATG 1 cut(s) 687
FaiI YATR 4 cut(s) 262, 522, 624, 685
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 683
Fnu4HI GCNGC 2 cut(s) 51, 54
FokI GGATG 3 cut(s) 242, 503, 671
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 51, 54
FspBI CTAG 1 cut(s) 183
GluI GCNGC 2 cut(s) 51, 54
HaeIII GGCC 1 cut(s) 464
HgaI GACGC 1 cut(s) 95
Hin1II CATG 1 cut(s) 687
HincII GTYRAC 3 cut(s) 312, 595, 616
HindII GTYRAC 3 cut(s) 312, 595, 616
HphI GGTGA 2 cut(s) 512, 569
Hpy166II GTNNAC 4 cut(s) 211, 312, 595, 616
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 3 cut(s) 410, 529, 652
Hpy8I GTNNAC 4 cut(s) 211, 312, 595, 616
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 596, 649
HpyCH4III ACNGT 5 cut(s) 85, 138, 208, 223, 620
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 4 cut(s) 53, 393, 450, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 4 cut(s) 254, 339, 408, 644
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 1 cut(s) 687
Kzo9I GATC 2 cut(s) 173, 250
LmnI GCTCC 2 cut(s) 404, 412
LpnPI CCDG 9 cut(s) 55, 82, 162, 220, 247, 320, 395, 402, 429
Lsp1109I GCAGC 2 cut(s) 37, 65
LweI GCATC 4 cut(s) 220, 305, 573, 657
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 500, 557
MalI GATC 2 cut(s) 175, 252
MboI GATC 2 cut(s) 173, 250
MboII GAAGA 4 cut(s) 3, 6, 19, 676
MhlI GDGCHC 2 cut(s) 260, 409
MluCI AATT 3 cut(s) 74, 164, 316
MnlI CCTC 6 cut(s) 50, 110, 121, 133, 202, 651
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 2 cut(s) 301, 388
MspR9I CCNGG 3 cut(s) 70, 235, 417
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 3 cut(s) 70, 235, 417
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 2 cut(s) 173, 250
NheI GCTAGC 1 cut(s) 182
NlaIII CATG 1 cut(s) 687
NlaIV GGNNCC 1 cut(s) 414
NmeAIII GCCGAG 1 cut(s) 490
NmuCI GTSAC 2 cut(s) 500, 557
PctI GAATGC 1 cut(s) 383
PkrI GCNGC 2 cut(s) 52, 55
PpuMI RGGWCCY 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 3 cut(s) 68, 233, 415
PspGI CCWGG 3 cut(s) 68, 233, 415
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 1 cut(s) 274
PspPPI RGGWCCY 1 cut(s) 274
PstI CTGCAG 1 cut(s) 55
RsaI GTAC 2 cut(s) 347, 356
RsaNI GTAC 2 cut(s) 346, 355
RseI CAYNNNNRTG 2 cut(s) 301, 388
SacI GAGCTC 1 cut(s) 409
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 2 cut(s) 51, 54
Sau3AI GATC 2 cut(s) 173, 250
Sau96I GGNCC 1 cut(s) 274
ScrFI CCNGG 3 cut(s) 70, 235, 417
SduI GDGCHC 2 cut(s) 260, 409
SetI ASST 9 cut(s) 42, 58, 249, 276, 370, 409, 489, 547, 672
SfaNI GCATC 4 cut(s) 220, 305, 573, 657
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 301, 388
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
Sse9I AATT 3 cut(s) 74, 164, 316
SspMI CTAG 1 cut(s) 183
SstI GAGCTC 1 cut(s) 409
StyD4I CCNGG 3 cut(s) 68, 233, 415
TaaI ACNGT 5 cut(s) 85, 138, 208, 223, 620
TaiI ACGT 1 cut(s) 249
TaqI TCGA 3 cut(s) 172, 536, 651
TasI AATT 3 cut(s) 74, 164, 316
TatI WGTACW 1 cut(s) 354
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 2 cut(s) 500, 557
TseI GCWGC 2 cut(s) 50, 53
Tsp45I GTSAC 2 cut(s) 500, 557
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 274
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.