Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013808

Physical Location & Seq

Genomic Coordinates Reverse (-)

54054597 .. 54056314

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003894

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCTCTGTTCTTCTACTCGTTTTCTATTCCGGAGAAATCTCACCGTCGCTGCTTCTCTCCTTTTGCCCAAGCACTTCTCGGCCGATTCCAACCATACCCTTTTGCGTTCTTCCCGTTCCCCCTCGATCAAGGCAGAGTCTTCGACCCCATTTCCGTCTTTTCGATCCAATCGCACAATGGCCAGCCAGTCCACCACCAAATCTGTCCACGACTTCACTGTCAAGGATGCCAAGGGCAATGATGTTGACCTCAGCTCCTACAAAGGAAAGGTTCTTTTGATTGTCAATGTTGCATCACAATGTGGCTTGACCAATTCAAACTACACAGAGCTGGCTCAGTTGTATGAGAAATACAAAACTCAAGGTTTGGAGATTTTGGCATTCCCTTGCAATCAGTTTGGAGCTCAGGAGCCAGGATCTAATGACGAGATTGTAGAGTTTGCTTGCACTCGCTTTAAGGCCGAGTATCCCATCTTTGACAAGGTGGATGTGAATGGTGACAAAGCCACTCCATTGTACAAGTTCTTGAAGTCGAGCAAAGGTGGACTCTTTGGTGACAGCATCAAGTGGAACTTCTCCAAATTCCTTGTTGACAAGGAAGGCAATGTTGTCGACCGTTATGCCCCAACAACTTCTCCTCTTAGCATCGAGAAGGATGTGAAGAAACTGTTGGGGGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0004602 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

228

Amino Acids

25.13

Weight (kDa)

9.17

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	68 - 132	4e-09	AhpC/TSA family
Redoxin	PF08534	68 - 210	4.7e-08	Redoxin
GSHPx	PF00255	69 - 177	4.8e-43	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11600
fragaria_vesca	FvH4_5g02130
malus_domestica	MD06G1081300.v1.1 MD14G1103200.v1.1
prunus_persica	Prupe.5G098400_v2.0.a1
pyrus_communis	pycom06g07830
rosa_chinensis	RchiOBHm_Chr7g0198001
rosa_laevigata	RLG00000003894
rosa_multiflora	Rmu_sc0000221.1_g000037 Rmu_sc0001082.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258020
rosa_rugosa	Rorug07G0045200
rosa_samantha	Rh7AG168700 Rh7BG171800 Rh7CG178200 Rh7DG171000
rosa_wichuraiana	Rw7G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	612
AccIII	TCCGGA	1 cut(s)	30
AclWI	GGATC	2 cut(s)	159, 424
AcoI	YGGCCR	2 cut(s)	81, 180
AcsI	RAATTY	1 cut(s)	581
AdeI	CACNNNGTG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	318, 529
AjnI	CCWGG	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	1 cut(s)	653
AluBI	AGCT	3 cut(s)	255, 331, 404
AluI	AGCT	3 cut(s)	255, 331, 404
Alw21I	GWGCWC	1 cut(s)	406
AlwI	GGATC	2 cut(s)	159, 424
Aor13HI	TCCGGA	1 cut(s)	30
AoxI	GGCC	3 cut(s)	81, 180, 459
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	581
AsuHPI	GGTGA	3 cut(s)	34, 509, 566
BalI	TGGCCA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	406
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	479
BcgI	CGANNNNNNTGC	6 cut(s)	123, 157, 592, 602, 626, 636
BciT130I	CCWGG	1 cut(s)	414
BciVI	GTATCC	1 cut(s)	477
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	4 cut(s)	217, 302, 570, 654
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	2 cut(s)	251, 405
BpuEI	CTTGAG	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 269, 619, 649
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	2 cut(s)	244, 610
BseAI	TCCGGA	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	3 cut(s)	232, 493, 661
BseMI	GCAATG	2 cut(s)	244, 610
BseMII	CTCAG	3 cut(s)	265, 350, 419
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	627
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	37
Bsh1285I	CGRYCG	2 cut(s)	84, 616
BshFI	GGCC	3 cut(s)	83, 182, 461
BsiEI	CGRYCG	2 cut(s)	84, 616
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	83, 182, 461
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp13I	TCCGGA	1 cut(s)	30
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	126, 164, 416
BspANI	GGCC	3 cut(s)	83, 182, 461
BspCNI	CTCAG	3 cut(s)	264, 349, 418
BspEI	TCCGGA	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	411
BspPI	GGATC	2 cut(s)	159, 424
BsrDI	GCAATG	2 cut(s)	244, 610
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	126, 164, 416
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	4 cut(s)	46, 220, 617, 669
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	3 cut(s)	184, 333, 445
BstDEI	CTNAG	4 cut(s)	251, 336, 405, 641
BstF5I	GGATG	3 cut(s)	232, 493, 661
BstKTI	GATC	3 cut(s)	129, 167, 419
BstMBI	GATC	3 cut(s)	126, 164, 416
BstMCI	CGRYCG	2 cut(s)	84, 616
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BstZI	CGGCCG	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	83, 182, 461
BtsCI	GGATG	3 cut(s)	232, 493, 661
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	184, 333, 445
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	1 cut(s)	681
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	4 cut(s)	251, 336, 405, 641
DpnI	GATC	3 cut(s)	128, 166, 418
DpnII	GATC	3 cut(s)	126, 164, 416
DraIII	CACNNNGTG	1 cut(s)	302
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	81, 180
EagI	CGGCCG	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	404
EclXI	CGGCCG	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	406
Eco52I	CGGCCG	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	684
FaiI	YATR	4 cut(s)	96, 345, 621, 682
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FatI	CATG	1 cut(s)	680
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	3 cut(s)	239, 500, 668
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	83, 182, 461
HapII	CCGG	1 cut(s)	31
Hin1II	CATG	1 cut(s)	684
HincII	GTYRAC	3 cut(s)	247, 592, 613
HindII	GTYRAC	3 cut(s)	247, 592, 613
HinfI	GANTC	3 cut(s)	86, 137, 546
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	3 cut(s)	34, 509, 566
Hpy166II	GTNNAC	6 cut(s)	192, 208, 247, 545, 592, 613
Hpy188III	TCNNGA	4 cut(s)	31, 407, 526, 649
Hpy8I	GTNNAC	6 cut(s)	192, 208, 247, 545, 592, 613
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	593, 646
HpyCH4III	ACNGT	4 cut(s)	46, 220, 617, 669
HpyCH4V	TGCA	4 cut(s)	293, 390, 447, 680
HpyF3I	CTNAG	4 cut(s)	251, 336, 405, 641
Hsp92II	CATG	1 cut(s)	684
Kpn2I	TCCGGA	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	126, 164, 416
LmnI	GCTCC	3 cut(s)	260, 401, 409
LpnPI	CCDG	7 cut(s)	44, 196, 200, 317, 392, 399, 426
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	4 cut(s)	217, 302, 570, 654
MaeIII	GTNAC	2 cut(s)	497, 554
MalI	GATC	3 cut(s)	128, 166, 418
MboI	GATC	3 cut(s)	126, 164, 416
MboII	GAAGA	4 cut(s)	3, 102, 132, 673
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	406
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	2 cut(s)	313, 581
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	146, 540
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	3 cut(s)	133, 260, 648
Mox20I	TGGCCA	1 cut(s)	182
MroI	TCCGGA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	298
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	414
NdeII	GATC	3 cut(s)	126, 164, 416
NlaIII	CATG	1 cut(s)	684
NlaIV	GGNNCC	1 cut(s)	411
NmeAIII	GCCGAG	2 cut(s)	59, 487
NmuCI	GTSAC	2 cut(s)	497, 554
PctI	GAATGC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	2 cut(s)	145, 540
PpsI	GAGTC	2 cut(s)	145, 540
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	298
SacI	GAGCTC	1 cut(s)	406
SalI	GTCGAC	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	126, 164, 416
SchI	GAGTC	2 cut(s)	146, 540
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	8 cut(s)	252, 257, 273, 333, 367, 406, 486, 544
SfaNI	GCATC	4 cut(s)	217, 302, 570, 654
SmiMI	CAYNNNNRTG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	2 cut(s)	313, 581
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	4 cut(s)	46, 220, 617, 669
TaqI	TCGA	6 cut(s)	125, 143, 163, 533, 612, 648
TasI	AATT	2 cut(s)	313, 581
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	497, 554
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	497, 554
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.