Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013808

Physical Location & Seq

Genomic Coordinates Forward (+)

12781955 .. 12783917

Gene Structure 1963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACGTATTCCCTGATGCAAAATCCCAGCCGTTTCCCCACTTCCAAACGCTTTGTCCTTACACCTCCACGTGTATCATCGCATTCCACAGCTATAAATAAAGGCCCATTCTCTGCTTTCAGTCTCCAAATGCTCTGCATCTGCAAATCTACTCGTTTTCTCTTCCGACGAAAACTCACCGTTGCCGCTTCATCTGCTTCTCAGCGTCTGCAAAAGCACTTCTCCGCCGATTCCTTGCAGACCCTTTTGCCACGGTCGCGGATTTCTCTGTTTTCGCCGTCTATCAAGGTCGAGTTTTCAAGCCCGGTTGCATCTACTTTGCTGTTGAATCGTACAATGGCTGGCCAGTCCGAGAGTAAATCAATCCATGATTTCACTGTCAAGGATGCCAAGGGTAGTGATGTTGATCTCAGCACCTACAAAGGGAAGGTCCTTCTGATCGTTAACGTTGCGTCGCAATGTGGCTTGACTAATTCAAACTACACAGAGTTGGCTCAGTTGTATGAGAAATACAAAACTCAAGGTTTGGAAATCTTGGCATTCCCATCCAACCAGTTTGGAGCTCAGGAGCCAGGGACAAATGACGAGATTGTCGAGTTTGCCTGCACTCGCTTCAAGGCTGAGTATCCCATCTTTGACAAGGTGGATGTGAATGGCGGCAATGCCGCTCCGATTTACAAATTCTTGAAGTCGAGCAAGGGTGGACTGTTTGGTGACAGCATCAAGTGGAACTTCTCCAAGTTCCTGGTTGACAAAGAAGGGAAAGTCGTTGACCGTTATGCCCCTACAACTTCTCCTCTTAGCATTGAGAAGGACGTGAAGAAACTGCTGGGGGTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0004602 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

281

Amino Acids

30.94

Weight (kDa)

9.62

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11600
fragaria_vesca	FvH4_5g02130
malus_domestica	MD06G1081300.v1.1 MD14G1103200.v1.1
prunus_persica	Prupe.5G098400_v2.0.a1
pyrus_communis	pycom06g07830
rosa_chinensis	RchiOBHm_Chr7g0198001
rosa_laevigata	RLG00000003894
rosa_multiflora	Rmu_sc0000221.1_g000037 Rmu_sc0001082.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258020
rosa_rugosa	Rorug07G0045200
rosa_samantha	Rh7AG168700 Rh7BG171800 Rh7CG178200 Rh7DG171000
rosa_wichuraiana	Rw7G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	668
AccII	CGCG	1 cut(s)	259
AciI	CCGC	5 cut(s)	186, 225, 259, 657, 666
AclI	AACGTT	1 cut(s)	447
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	680
AcvI	CACGTG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	423
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	5 cut(s)	300, 328, 477, 616, 688
AjiI	CACGTC	1 cut(s)	817
AjnI	CCWGG	2 cut(s)	571, 744
AluBI	AGCT	2 cut(s)	92, 563
AluI	AGCT	2 cut(s)	92, 563
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	208
AoxI	GGCC	2 cut(s)	103, 343
ApoI	RAATTY	1 cut(s)	680
ArsI	GACNNNNNNTTYG	4 cut(s)	39, 71, 414, 446
AspS9I	GGNCC	2 cut(s)	104, 430
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	169, 725
AvaII	GGWCC	1 cut(s)	430
BalI	TGGCCA	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	565
BbrPI	CACGTG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	565
BccI	CCATC	2 cut(s)	553, 638
BceAI	ACGGC	2 cut(s)	15, 262
BciT130I	CCWGG	2 cut(s)	573, 746
BciVI	GTATCC	1 cut(s)	636
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	636
BisI	GCNGC	3 cut(s)	186, 658, 666
BlsI	GCNGC	3 cut(s)	187, 659, 667
Bme1390I	CCNGG	3 cut(s)	305, 573, 746
Bme18I	GGWCC	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	817
BmgT120I	GGNCC	2 cut(s)	104, 430
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	3 cut(s)	305, 573, 746
BmsI	GCATC	5 cut(s)	6, 147, 320, 376, 729
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	3 cut(s)	251, 390, 572
BsaXI	ACNNNNNCTCC	2 cut(s)	778, 808
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	2 cut(s)	346, 553
Bse3DI	GCAATG	2 cut(s)	464, 667
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	573, 746
BseDI	CCNNGG	3 cut(s)	251, 390, 572
BseGI	GGATG	3 cut(s)	391, 545, 652
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMI	GCAATG	2 cut(s)	464, 667
BseMII	CTCAG	5 cut(s)	215, 424, 509, 578, 612
BseNI	ACTGG	2 cut(s)	346, 553
BseRI	GAGGAG	1 cut(s)	786
BseYI	CCCAGC	2 cut(s)	26, 829
BsgI	GTGCAG	1 cut(s)	589
Bsh1236I	CGCG	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	105, 345
BsiEI	CGRYCG	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	589
BsmI	GAATGC	2 cut(s)	82, 539
BsnI	GGCC	2 cut(s)	105, 345
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	2 cut(s)	406, 438
BspACI	CCGC	5 cut(s)	186, 225, 259, 657, 666
BspANI	GGCC	2 cut(s)	105, 345
BspCNI	CTCAG	5 cut(s)	214, 423, 508, 577, 613
BspFNI	CGCG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	570
BsrBI	CCGCTC	1 cut(s)	668
BsrDI	GCAATG	2 cut(s)	464, 667
BsrI	ACTGG	2 cut(s)	346, 553
BssECI	CCNNGG	3 cut(s)	251, 390, 572
BssMI	GATC	2 cut(s)	406, 438
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	573, 746
Bst4CI	ACNGT	5 cut(s)	181, 255, 379, 708, 776
Bst6I	CTCTTC	1 cut(s)	167
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	343, 604
BstDEI	CTNAG	6 cut(s)	201, 410, 495, 564, 621, 800
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	3 cut(s)	391, 545, 652
BstFNI	CGCG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	409, 441
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	406, 438
BstMCI	CGRYCG	1 cut(s)	257
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 256
BstNI	CCWGG	2 cut(s)	573, 746
BstSCI	CCNGG	3 cut(s)	303, 571, 744
BstUI	CGCG	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	745
BsuI	GTATCC	1 cut(s)	636
BsuRI	GGCC	2 cut(s)	105, 345
BtgI	CCRYGG	1 cut(s)	251
BtgZI	GCGATG	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	817
BtsCI	GGATG	3 cut(s)	391, 545, 652
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	343, 604
CaiI	CAGNNNCTG	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	104, 430
CseI	GACGC	2 cut(s)	194, 441
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	2 cut(s)	368, 840
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	6 cut(s)	201, 410, 495, 564, 621, 800
DpnI	GATC	2 cut(s)	408, 440
DpnII	GATC	2 cut(s)	406, 438
DrdI	GACNNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	590
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	563
Eco72I	CACGTG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	571, 744
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	2 cut(s)	371, 843
FaiI	YATR	5 cut(s)	95, 369, 504, 780, 841
FalI	AAGNNNNNCTT	2 cut(s)	716, 748
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	2 cut(s)	367, 839
Fnu4HI	GCNGC	3 cut(s)	186, 658, 666
FokI	GGATG	3 cut(s)	398, 532, 659
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	3 cut(s)	186, 658, 666
GluI	GCNGC	3 cut(s)	186, 658, 666
GsaI	CCCAGC	2 cut(s)	30, 833
HaeIII	GGCC	2 cut(s)	105, 345
HapII	CCGG	1 cut(s)	305
HgaI	GACGC	2 cut(s)	194, 441
Hin1II	CATG	2 cut(s)	371, 843
HincII	GTYRAC	3 cut(s)	445, 751, 772
HindII	GTYRAC	3 cut(s)	445, 751, 772
HinfI	GANTC	2 cut(s)	230, 328
HpaI	GTTAAC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	2 cut(s)	169, 725
Hpy166II	GTNNAC	4 cut(s)	445, 704, 751, 772
Hpy188I	TCNGA	4 cut(s)	167, 352, 438, 672
Hpy188III	TCNNGA	2 cut(s)	566, 685
Hpy8I	GTNNAC	4 cut(s)	445, 704, 751, 772
Hpy99I	CGWCG	2 cut(s)	171, 457
HpyAV	CCTTC	4 cut(s)	421, 443, 752, 805
HpyCH4III	ACNGT	5 cut(s)	181, 255, 379, 708, 776
HpyCH4IV	ACGT	4 cut(s)	5, 70, 447, 816
HpyCH4V	TGCA	7 cut(s)	19, 138, 144, 211, 238, 311, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 256
HpyF3I	CTNAG	6 cut(s)	201, 410, 495, 564, 621, 800
HpySE526I	ACGT	4 cut(s)	5, 70, 447, 816
Hsp92II	CATG	2 cut(s)	371, 843
KspAI	GTTAAC	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	406, 438
LmnI	GCTCC	3 cut(s)	560, 568, 673
LweI	GCATC	5 cut(s)	6, 147, 320, 376, 729
MaeII	ACGT	4 cut(s)	5, 70, 447, 816
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	2 cut(s)	408, 440
MbiI	CCGCTC	1 cut(s)	668
MboI	GATC	2 cut(s)	406, 438
MboII	GAAGA	2 cut(s)	154, 832
MhlI	GDGCHC	1 cut(s)	565
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	2 cut(s)	472, 680
MluNI	TGGCCA	1 cut(s)	345
MmeI	TCCRAC	2 cut(s)	190, 573
MnlI	CCTC	2 cut(s)	75, 807
Mox20I	TGGCCA	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	345
MseI	TTAA	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	345
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	3 cut(s)	305, 573, 746
Mva1269I	GAATGC	2 cut(s)	82, 539
MvaI	CCWGG	2 cut(s)	573, 746
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	194, 256
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	2 cut(s)	406, 438
NlaIII	CATG	2 cut(s)	371, 843
NlaIV	GGNNCC	1 cut(s)	570
NmuCI	GTSAC	1 cut(s)	713
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PctI	GAATGC	2 cut(s)	82, 539
PfeI	GAWTC	2 cut(s)	230, 328
PkrI	GCNGC	3 cut(s)	187, 659, 667
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	71
PpuMI	RGGWCCY	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	565
Psp1406I	AACGTT	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	430
Psp6I	CCWGG	2 cut(s)	571, 744
PspCI	CACGTG	1 cut(s)	71
PspFI	CCCAGC	2 cut(s)	26, 829
PspGI	CCWGG	2 cut(s)	571, 744
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	2 cut(s)	104, 430
PspPPI	RGGWCCY	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	565
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	3 cut(s)	186, 658, 666
Sau3AI	GATC	2 cut(s)	406, 438
Sau96I	GGNCC	2 cut(s)	104, 430
ScrFI	CCNGG	3 cut(s)	305, 573, 746
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	5 cut(s)	6, 147, 320, 376, 729
SinI	GGWCC	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	519
SmoI	CTYRAG	1 cut(s)	519
Sse9I	AATT	2 cut(s)	472, 680
SsiI	CCGC	5 cut(s)	186, 225, 259, 657, 666
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	3 cut(s)	303, 571, 744
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	5 cut(s)	181, 255, 379, 708, 776
TaiI	ACGT	4 cut(s)	8, 73, 450, 819
TaqI	TCGA	3 cut(s)	291, 594, 692
TasI	AATT	2 cut(s)	472, 680
TauI	GCSGC	3 cut(s)	188, 660, 668
TfiI	GAWTC	2 cut(s)	230, 328
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	713
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.