Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013808

Physical Location & Seq

Genomic Coordinates Forward (+)

15900254 .. 15902477

Gene Structure 2224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1103200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTCTGTGCTACTACTCGCTTTCTCTTCCGACGAAATCTCACCGTCATCACTTCATCTGCTTCTCAGCTTCTGCAAAAGCACTTCTCGGCCGATTCCCGGCAGATCCTTTTGTGGTCGTCGCAGATTTCGCTGCTTTCGCCGTCGATCAAGATAGAGTTTTCGAGCCCGGTTTCGTCAACGTTCGGATTGAATCGTACAATGGCTAGCCAGTCCGAGAGTAAATCCCTCCACGACTTCACCGTCAAGGATGCCAAGGGTAACGATGTTGATCTTAGCACCTACAAAGGGAAGGTCCTGATGATCGTCAACGTCGCATCGCAGTGTGGCTTGACTAATTCAAACTACACAGAGCTAGCTCAGTTGTATGAAAAATACAAAACTCAAGGATTGGAAATCTTGGCATTCGCGTGCAATCAGTTTGGAGCTCAGGAGCCGGGGACAAATGATGAGATTGTAGAGTTTGCTTGCACTCGCTTTAAGGCCGAGTATCCCATCTTTGATAAGGTGGATGTGAATGGTGAGAAAGCTGCTCTGATTTACAAGTACTTGAAGTCGAGCAAGGGTGAACTCTTTGGCCACAACATCAAGTGGAACTTCTCCAAGTTCCTGGTTGACAAAGAAGGGAAAGTCGTTGACCGTTATGCTCCTACAACTTCTCCTCTTAGCATTGACAAGGATGTAAAGAAACTGTTGGGGGTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0004602 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

236

Amino Acids

26.25

Weight (kDa)

8.9

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	75 - 219	3e-08	Redoxin
GSHPx	PF00255	77 - 185	8.5e-40	Glutathione peroxidase
AhpC-TSA	PF00578	77 - 142	1.8e-09	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11600
fragaria_vesca	FvH4_5g02130
malus_domestica	MD06G1081300.v1.1 MD14G1103200.v1.1
prunus_persica	Prupe.5G098400_v2.0.a1
pyrus_communis	pycom06g07830
rosa_chinensis	RchiOBHm_Chr7g0198001
rosa_laevigata	RLG00000003894
rosa_multiflora	Rmu_sc0000221.1_g000037 Rmu_sc0001082.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258020
rosa_rugosa	Rorug07G0045200
rosa_samantha	Rh7AG168700 Rh7BG171800 Rh7CG178200 Rh7DG171000
rosa_wichuraiana	Rw7G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
AccII	CGCG	1 cut(s)	410
AclI	AACGTT	1 cut(s)	182
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	2 cut(s)	90, 577
AfaI	GTAC	2 cut(s)	199, 548
AfiI	CCNNNNNNNGG	2 cut(s)	99, 288
AgsI	TTSAA	3 cut(s)	193, 342, 553
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	5 cut(s)	70, 355, 359, 428, 530
AluI	AGCT	5 cut(s)	70, 355, 359, 428, 530
Alw21I	GWGCWC	1 cut(s)	430
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	3 cut(s)	90, 483, 577
ApeKI	GCWGC	2 cut(s)	133, 530
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	3 cut(s)	100, 170, 438
AsuHPI	GGTGA	4 cut(s)	34, 232, 533, 578
AsuNHI	GCTAGC	2 cut(s)	206, 355
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	579
BanII	GRGCYC	2 cut(s)	170, 430
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	120, 517
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	611
BciVI	GTATCC	1 cut(s)	501
BcnI	CCSGG	3 cut(s)	100, 170, 438
BfaI	CTAG	2 cut(s)	207, 356
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	2 cut(s)	134, 531
BlsI	GCNGC	2 cut(s)	135, 532
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	4 cut(s)	100, 170, 438, 611
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	4 cut(s)	100, 170, 438, 611
BmsI	GCATC	2 cut(s)	241, 326
BmtI	GCTAGC	2 cut(s)	210, 359
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	369
BpuMI	CCSGG	3 cut(s)	100, 170, 438
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	255, 437
BsaXI	ACNNNNNCTCC	2 cut(s)	643, 673
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 288
Bse1I	ACTGG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	2 cut(s)	255, 437
BseGI	GGATG	3 cut(s)	256, 517, 685
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	99, 288
BseMII	CTCAG	3 cut(s)	80, 374, 443
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	651
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	120, 517
Bsh1236I	CGCG	1 cut(s)	410
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	92, 485, 579
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	3 cut(s)	100, 170, 437
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	99, 288
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	3 cut(s)	92, 485, 579
Bsp1286I	GDGCHC	2 cut(s)	170, 430
Bsp143I	GATC	4 cut(s)	105, 147, 271, 303
BspANI	GGCC	3 cut(s)	92, 485, 579
BspCNI	CTCAG	3 cut(s)	79, 373, 442
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	1 cut(s)	435
BspOI	GCTAGC	2 cut(s)	210, 359
BspPI	GGATC	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	255, 437
BssMI	GATC	4 cut(s)	105, 147, 271, 303
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	4 cut(s)	46, 244, 641, 693
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	4 cut(s)	208, 357, 412, 469
BstDEI	CTNAG	5 cut(s)	66, 275, 360, 429, 665
BstF5I	GGATG	3 cut(s)	256, 517, 685
BstFNI	CGCG	1 cut(s)	410
BstKTI	GATC	4 cut(s)	108, 150, 274, 306
BstMBI	GATC	4 cut(s)	105, 147, 271, 303
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 139
BstNI	CCWGG	1 cut(s)	611
BstSCI	CCNGG	4 cut(s)	98, 168, 436, 609
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	120, 517
BstX2I	RGATCY	1 cut(s)	105
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	105
BstZI	CGGCCG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	92, 485, 579
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	256, 517, 685
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	4 cut(s)	208, 357, 412, 469
CaiI	CAGNNNCTG	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	198, 547
CviAII	CATG	1 cut(s)	705
CviQI	GTAC	2 cut(s)	198, 547
DdeI	CTNAG	5 cut(s)	66, 275, 360, 429, 665
DpnI	GATC	4 cut(s)	107, 149, 273, 305
DpnII	GATC	4 cut(s)	105, 147, 271, 303
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	2 cut(s)	90, 577
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	428
EclXI	CGGCCG	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	170, 430
Eco47I	GGWCC	1 cut(s)	295
Eco52I	CGGCCG	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	2 cut(s)	170, 430
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	708
FaiI	YATR	3 cut(s)	369, 645, 706
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	1 cut(s)	704
Fnu4HI	GCNGC	2 cut(s)	134, 531
FokI	GGATG	3 cut(s)	263, 524, 692
FriOI	GRGCYC	2 cut(s)	170, 430
Fsp4HI	GCNGC	2 cut(s)	134, 531
FspBI	CTAG	2 cut(s)	207, 356
GluI	GCNGC	2 cut(s)	134, 531
HaeIII	GGCC	3 cut(s)	92, 485, 579
HapII	CCGG	3 cut(s)	100, 170, 437
Hin1II	CATG	1 cut(s)	708
HincII	GTYRAC	4 cut(s)	180, 310, 616, 637
HindII	GTYRAC	4 cut(s)	180, 310, 616, 637
HinfI	GANTC	2 cut(s)	95, 193
HpaII	CCGG	3 cut(s)	100, 170, 437
HphI	GGTGA	4 cut(s)	34, 232, 533, 578
Hpy166II	GTNNAC	5 cut(s)	180, 310, 569, 616, 637
Hpy188I	TCNGA	4 cut(s)	32, 188, 217, 537
Hpy188III	TCNNGA	3 cut(s)	151, 298, 431
Hpy8I	GTNNAC	5 cut(s)	180, 310, 569, 616, 637
Hpy99I	CGWCG	4 cut(s)	36, 124, 148, 317
HpyAV	CCTTC	2 cut(s)	286, 617
HpyCH4III	ACNGT	4 cut(s)	46, 244, 641, 693
HpyCH4IV	ACGT	2 cut(s)	182, 312
HpyCH4V	TGCA	3 cut(s)	76, 414, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 139
HpyF3I	CTNAG	5 cut(s)	66, 275, 360, 429, 665
HpySE526I	ACGT	2 cut(s)	182, 312
Hsp92II	CATG	1 cut(s)	708
Kzo9I	GATC	4 cut(s)	105, 147, 271, 303
LmnI	GCTCC	3 cut(s)	425, 433, 652
LpnPI	CCDG	8 cut(s)	113, 183, 224, 311, 416, 450, 596, 623
Lsp1109I	GCAGC	2 cut(s)	120, 517
LweI	GCATC	2 cut(s)	241, 326
MaeI	CTAG	2 cut(s)	207, 356
MaeII	ACGT	2 cut(s)	182, 312
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	4 cut(s)	107, 149, 273, 305
MboI	GATC	4 cut(s)	105, 147, 271, 303
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	170, 430
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	1 cut(s)	337
MluNI	TGGCCA	1 cut(s)	579
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	239, 672
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	322, 409
Msp20I	TGGCCA	1 cut(s)	579
MspI	CCGG	3 cut(s)	100, 170, 437
MspR9I	CCNGG	4 cut(s)	100, 170, 438, 611
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	611
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	130, 139
NciI	CCSGG	3 cut(s)	100, 170, 438
NdeII	GATC	4 cut(s)	105, 147, 271, 303
NheI	GCTAGC	2 cut(s)	206, 355
NlaIII	CATG	1 cut(s)	708
NlaIV	GGNNCC	1 cut(s)	435
NmeAIII	GCCGAG	2 cut(s)	68, 511
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	95, 193
PkrI	GCNGC	2 cut(s)	135, 532
PpuMI	RGGWCCY	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	430
Psp1406I	AACGTT	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	295
PspPPI	RGGWCCY	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	2 cut(s)	199, 548
RsaNI	GTAC	2 cut(s)	198, 547
RseI	CAYNNNNRTG	2 cut(s)	322, 409
SacI	GAGCTC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	134, 531
Sau3AI	GATC	4 cut(s)	105, 147, 271, 303
Sau96I	GGNCC	1 cut(s)	295
ScaI	AGTACT	1 cut(s)	548
ScrFI	CCNGG	4 cut(s)	100, 170, 438, 611
SduI	GDGCHC	2 cut(s)	170, 430
SfaNI	GCATC	2 cut(s)	241, 326
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	322, 409
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	207, 356
SstI	GAGCTC	1 cut(s)	430
StyD4I	CCNGG	4 cut(s)	98, 168, 436, 609
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	4 cut(s)	46, 244, 641, 693
TaiI	ACGT	2 cut(s)	185, 315
TaqI	TCGA	3 cut(s)	146, 164, 557
TasI	AATT	1 cut(s)	337
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	95, 193
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	329
TseI	GCWGC	2 cut(s)	133, 530
TspDTI	ATGAA	2 cut(s)	45, 384
TspRI	CASTG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	295
XspI	CTAG	2 cut(s)	207, 356
ZrmI	AGTACT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.