Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013808

Physical Location & Seq

Genomic Coordinates Forward (+)

14441186 .. 14443269

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G014740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTCCGGGCATCTCAAATGCTCTGTTCTTCTACTCGTTTTCTCTTCCGAAGAAATCTCACCGTCGCTGCTTCTCTCCTTTTGCCCAAGCACTTCTCGGCCGATTCCAACCCTACCCCTTTGCGTCCTTCGCGTTCCCCCTCGATCAAGGCAGAGTCTTCGACCCCATTTCCGTCTTTTCGATCCAATCGCACAATGGCTAGCCAGTCCACCACCAAATCTGTCCACGACTTCACTGTCAAGGATGCCAAGGGCAATGATGTTGATCTCAGCTCCTACAAAGGAAAGGTCCTTTTGATTGTCAATGTCGCATCACAATGTGGCCTGACCAATTCAAACTACACAGAGCTGGCTCAGTTGTATGAGAAATACAAAACTCAAGGTTTGGAGATTTTGGCATTCCCTTGCAATCAGTTTGGAGCTCAGGAGCCAGGATCTAATGACGAGATTGTAGAGTTTGCTTGCACTCGCTTTAAGGCCGAGTATCCCATCTTTGACAAGGTGGATGTGAATGGTGACAAAGCCACTCCATTGTACAAGTTCTTGAAGTCGAGCAAAGGTGGACTCTTTGGTGACAGCATCAAGTGGAACTTCTCCAAATTCCTTGTTGACAAGGAAGGCAATGTTGTCGATCGTTATGCCCCAACAACTTCTCCTCTTAGCATCGAGAAGGATGTGAAGAAACTGTTGGGGGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0004602 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

233

Amino Acids

25.81

Weight (kDa)

9.27

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	74 - 138	4.2e-09	AhpC/TSA family
Redoxin	PF08534	74 - 216	5.1e-08	Redoxin
GSHPx	PF00255	75 - 183	5.2e-43	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11600
fragaria_vesca	FvH4_5g02130
malus_domestica	MD06G1081300.v1.1 MD14G1103200.v1.1
prunus_persica	Prupe.5G098400_v2.0.a1
pyrus_communis	pycom06g07830
rosa_chinensis	RchiOBHm_Chr7g0198001
rosa_laevigata	RLG00000003894
rosa_multiflora	Rmu_sc0000221.1_g000037 Rmu_sc0001082.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258020
rosa_rugosa	Rorug07G0045200
rosa_samantha	Rh7AG168700 Rh7BG171800 Rh7CG178200 Rh7DG171000
rosa_wichuraiana	Rw7G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccII	CGCG	1 cut(s)	133
AclWI	GGATC	2 cut(s)	177, 442
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	599
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	536
AgsI	TTSAA	2 cut(s)	336, 547
AjnI	CCWGG	1 cut(s)	430
AjuI	GAANNNNNNNTTGG	1 cut(s)	671
AluBI	AGCT	3 cut(s)	273, 349, 422
AluI	AGCT	3 cut(s)	273, 349, 422
Alw21I	GWGCWC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	177, 442
AoxI	GGCC	3 cut(s)	99, 322, 477
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	599
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	3 cut(s)	52, 527, 584
AsuNHI	GCTAGC	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	497
BcgI	CGANNNNNNTGC	6 cut(s)	141, 175, 610, 620, 644, 654
BciT130I	CCWGG	1 cut(s)	432
BciVI	GTATCC	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	8
BfaI	CTAG	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	495
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	8, 432
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	8, 432
BmsI	GCATC	5 cut(s)	20, 235, 320, 588, 672
BmtI	GCTAGC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	2 cut(s)	262, 628
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	3 cut(s)	250, 511, 679
BseJI	GATNNNNATC	1 cut(s)	264
BseMI	GCAATG	2 cut(s)	262, 628
BseMII	CTCAG	3 cut(s)	283, 368, 437
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	645
BseX3I	CGGCCG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	133
Bsh1285I	CGRYCG	2 cut(s)	102, 634
BshFI	GGCC	3 cut(s)	101, 324, 479
BsiEI	CGRYCG	2 cut(s)	102, 634
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	3 cut(s)	101, 324, 479
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	5 cut(s)	144, 182, 265, 434, 631
BspANI	GGCC	3 cut(s)	101, 324, 479
BspCNI	CTCAG	3 cut(s)	282, 367, 436
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	429
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	177, 442
BsrDI	GCAATG	2 cut(s)	262, 628
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	5 cut(s)	144, 182, 265, 434, 631
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	3 cut(s)	64, 238, 687
Bst6I	CTCTTC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	3 cut(s)	202, 351, 463
BstDEI	CTNAG	4 cut(s)	269, 354, 423, 659
BstF5I	GGATG	3 cut(s)	250, 511, 679
BstFNI	CGCG	1 cut(s)	133
BstKTI	GATC	5 cut(s)	147, 185, 268, 437, 634
BstMBI	GATC	5 cut(s)	144, 182, 265, 434, 631
BstMCI	CGRYCG	2 cut(s)	102, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	6, 430
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BstZI	CGGCCG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	3 cut(s)	101, 324, 479
BtsCI	GGATG	3 cut(s)	250, 511, 679
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	3 cut(s)	202, 351, 463
Cfr13I	GGNCC	1 cut(s)	289
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	1 cut(s)	699
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	4 cut(s)	269, 354, 423, 659
DpnI	GATC	5 cut(s)	146, 184, 267, 436, 633
DpnII	GATC	5 cut(s)	144, 182, 265, 434, 631
DraIII	CACNNNGTG	1 cut(s)	320
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	99
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	422
EclXI	CGGCCG	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	289
Eco52I	CGGCCG	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	702
FaiI	YATR	3 cut(s)	363, 639, 700
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FatI	CATG	1 cut(s)	698
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	3 cut(s)	257, 518, 686
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	101, 324, 479
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	702
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	3 cut(s)	104, 155, 564
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	3 cut(s)	52, 527, 584
Hpy166II	GTNNAC	4 cut(s)	210, 226, 563, 610
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	3 cut(s)	425, 544, 667
Hpy8I	GTNNAC	4 cut(s)	210, 226, 563, 610
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	138, 611, 664
HpyCH4III	ACNGT	3 cut(s)	64, 238, 687
HpyCH4V	TGCA	3 cut(s)	408, 465, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	4 cut(s)	269, 354, 423, 659
Hsp92II	CATG	1 cut(s)	702
Kzo9I	GATC	5 cut(s)	144, 182, 265, 434, 631
LmnI	GCTCC	3 cut(s)	278, 419, 427
LpnPI	CCDG	7 cut(s)	20, 218, 335, 338, 410, 417, 444
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	5 cut(s)	20, 235, 320, 588, 672
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	515, 572
MalI	GATC	5 cut(s)	146, 184, 267, 436, 633
MboI	GATC	5 cut(s)	144, 182, 265, 434, 631
MboII	GAAGA	5 cut(s)	21, 37, 63, 150, 691
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	2 cut(s)	331, 599
MlyI	GAGTC	2 cut(s)	164, 558
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	151, 666
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	316
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	2 cut(s)	8, 432
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	130
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	5 cut(s)	144, 182, 265, 434, 631
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	1 cut(s)	702
NlaIV	GGNNCC	1 cut(s)	429
NmeAIII	GCCGAG	2 cut(s)	77, 505
NmuCI	GTSAC	2 cut(s)	515, 572
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	70
Ple19I	CGATCG	1 cut(s)	634
PleI	GAGTC	2 cut(s)	163, 558
PpsI	GAGTC	2 cut(s)	163, 558
PpuMI	RGGWCCY	1 cut(s)	289
Psp124BI	GAGCTC	1 cut(s)	424
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	289
PspPPI	RGGWCCY	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	434
PvuI	CGATCG	1 cut(s)	634
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	5 cut(s)	144, 182, 265, 434, 631
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	2 cut(s)	164, 558
ScrFI	CCNGG	2 cut(s)	8, 432
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	7 cut(s)	275, 291, 351, 385, 424, 504, 562
SfaNI	GCATC	5 cut(s)	20, 235, 320, 588, 672
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	2 cut(s)	331, 599
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	2 cut(s)	6, 430
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	64, 238, 687
TaqI	TCGA	6 cut(s)	143, 161, 181, 551, 630, 666
TasI	AATT	2 cut(s)	331, 599
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	515, 572
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	2 cut(s)	515, 572
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	1 cut(s)	599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.