AT4G11690

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013053
Physical Location & Seq
Forward (+)
7056202 .. 7058064
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11690.2

Sequence Viewer

Length: 1701 bp
ATGGCGGCAAAATCCCAGAAAACCCTCGTTCTGCTAGCGAATTTAATCAAGTTTCCTCCATTAAAAGCTTTTTCTCTCTTAAATTCTCCAAATTTCCATGAATTTCAACACACACACGAATCAATCTCAATCCTTCTTCGTCTCCTTCTCTCTGGGAACTTATTCTCTCACGCTCAATCACTTCTTCTACAAGTAATCTCCGGAAAAATCCACTCCCAATTCTTCACATCTTCCTCTCTGTTACACTATTTGACAGAATCAGAAACGTCAAAAACAAAGTTTCGTCTCTACGAGGTAATCATCAATTCCTATGTTCAATCTCAATCCCTAAACTTATCAATCTCTTACTTCAACGAAATGGTCGATAATGGTTTTGTTCCTGGATCGAATTGCTTCAACTATCTCTTAACTTTCGTTGTTGGGTCATCTTCTTTCAATCAATGGTGGAGTTTCTTCAACGAGAACAAAAGCAAAGTTGTTTTGGACGTGTATAGCTTTGGGATTCTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTGAGAAAAGCTTTGATCTTCTTATTGAATTGACAGAGTTTGGGTTTTCTCCAAATGTAGTTATCTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCTAAAGATTTGTTTTTTGAGATGGGGAAACTTGGATTAGTGGCTAATGAGCGTACTTACACGGTTTTGATTAATGGGTTATTCAAAAACGGGGTTAAGAAACAAGGGTTTGAGATGTATGAGAAGATGCAGGAAGATGGAGTTTTCCCTAATCTCTATACTTATAACTGTGTGATGAATCAGCTTTGTAAAGATGGAAGAACAAAAGATGCATTCCAAGTGTTCGACGAAATGCGTGAGAGAGGGGTTTCTTGTAACATTGTCACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGTTGAATGAGGCAAATAAAGTTGTGGATCAAATGAAGAGTGATGGAATCAACCCGAATCTGATTACGTATAACACTTTGATTGATGGGTTTTGTGGTGTGGGAAAATTAGGGAAGGCGTTGAGTTTATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCCCTCGTCACGTATAATATCCTAGTTTCCGGGTTCTGTAGAAAAGGAGATACTTCAGGAGCAGCTAAGATGGTTAAGGAGATGGAAGAGAGAGGGATTAAACCGTCGAAAGTAACATACACGATACTTATCGACACATTTGCTCGTTCGGATAACATGGAGAAAGCAATTCAGCTTCGACTATCAATGGAGGAACTAGGATTAGTCCCGGATGTTCATACCTATAGTGTATTGATTCATGGGTTTTGCATCAAAGGTCAAATGAATGAAGCATCTAGGCTTTTTAAGTCGATGGTCGAAAAGAATTGTGAACCGAACGAGGTTATATACAATACGATGATTCTTGGTTATTGTAAGGAAGGTAGTTCTTATAGAGCATTGAAGTTGCTTAAGGAGATGGAAGAGAAAGAGTTGGCTCCAAATGTTGCTAGCTACAGATATATGATTGAAGTTCTTTGTAAAGAAAGAAAATCGAAAGAAGCTGAGCGTTTAGTTGAGAAGATGATTGATTCAGGGATTGATCCATCTACTTCAATCCTTAGTTTGATCTCTAGAGCCAAAAACGATTCACATGTAAGCTCAAAATAA

Protein Analysis

566

Amino Acids

63.79

Weight (kDa)

8.01

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 172 - 202 3.8e-09 PPR repeat
PPR_2 PF13041 172 - 218 4.7e-15 PPR repeat family
PPR_1 PF12854 172 - 197 1.3e-07 PPR repeat
PPR_3 PF13812 193 - 250 5.3e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 209 - 253 1.5e-11 PPR repeat family
PPR_long PF17177 225 - 361 4.7e-14 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 235 - 268 2e-12 PPR repeat
PPR_2 PF13041 239 - 288 1.1e-19 PPR repeat family
PPR PF01535 242 - 272 2e-08 PPR repeat
PPR_3 PF13812 255 - 284 6e-06 Pentatricopeptide repeat domain
PPR_3 PF13812 263 - 320 9.8e-16 Pentatricopeptide repeat domain
PPR_1 PF12854 270 - 303 5.4e-12 PPR repeat
PPR_2 PF13041 275 - 322 1.7e-18 PPR repeat family
PPR PF01535 277 - 307 2.4e-07 PPR repeat
PPR_1 PF12854 305 - 336 9.8e-10 PPR repeat
PPR_2 PF13041 309 - 358 2.1e-16 PPR repeat family
PPR PF01535 312 - 342 5.2e-06 PPR repeat
PPR_3 PF13812 332 - 391 2.6e-11 Pentatricopeptide repeat domain
PPR_long PF17177 337 - 424 8e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 340 - 373 1.2e-11 PPR repeat
PPR_2 PF13041 344 - 393 1.4e-16 PPR repeat family
PPR PF01535 347 - 377 4.5e-08 PPR repeat
PPR_1 PF12854 375 - 404 5.2e-06 PPR repeat
PPR_2 PF13041 387 - 427 9.1e-10 PPR repeat family
PPR_3 PF13812 407 - 461 2.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 411 - 443 4.8e-11 PPR repeat
PPR PF01535 418 - 447 2.3e-07 PPR repeat
PPR_2 PF13041 422 - 452 5.2e-08 PPR repeat family
PPR_long PF17177 432 - 520 8.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 445 - 478 3.3e-10 PPR repeat
PPR_2 PF13041 449 - 498 1.8e-14 PPR repeat family
PPR PF01535 452 - 480 1.7e-07 PPR repeat
PPR_2 PF13041 484 - 520 6.8e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11690 AT4G11690
fragaria_vesca FvH4_3g36170
malus_domestica MD03G1092900.v1.1
prunus_persica Prupe.6G076800_v2.0.a1
pyrus_communis pycom03g07420
rosa_chinensis RchiOBHm_Chr5g0064671 RchiOBHm_Chr5g0064911
rosa_laevigata RLG00000035740 RLG00000035742
rosa_multiflora Rmu_sc0020903.1_g000003 Rmu_sc0025431.1_g000001
rosa_roxburghii Rroxscaffold_1G00016400
rosa_rugosa Rorug05G0366600
rosa_samantha Rh5AG425100 Rh5CG462600 Rh5DG453100
rosa_wichuraiana Rw5G039940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 813, 918
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 1 cut(s) 5
AclWI GGATC 3 cut(s) 391, 987, 1628
AcsI RAATTY 4 cut(s) 40, 82, 91, 101
AcuI CTGAAG 1 cut(s) 1152
AfaI GTAC 1 cut(s) 703
AflII CTTAAG 1 cut(s) 1502
AflIII ACRYGT 2 cut(s) 486, 1684
AjiI CACGTC 1 cut(s) 487
AjnI CCWGG 1 cut(s) 379
Alw26I GTCTC 3 cut(s) 146, 290, 1113
AlwI GGATC 3 cut(s) 391, 987, 1628
Aor13HI TCCGGA 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 1175
ApoI RAATTY 4 cut(s) 40, 82, 91, 101
AseI ATTAAT 1 cut(s) 720
Asp700I GAANNNNTTC 2 cut(s) 161, 392
AsuC2I CCSGG 2 cut(s) 1144, 1322
AsuHPI GGTGA 2 cut(s) 542, 647
AsuNHI GCTAGC 2 cut(s) 34, 1541
BbvI GCAGC 1 cut(s) 1187
BcgI CGANNNNNNTGC 2 cut(s) 1235, 1269
BciT130I CCWGG 1 cut(s) 381
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 2 cut(s) 1144, 1322
BcoDI GTCTC 3 cut(s) 146, 290, 1113
BfaI CTAG 6 cut(s) 35, 1136, 1310, 1389, 1542, 1665
BfmI CTRYAG 3 cut(s) 1150, 1336, 1546
BfrI CTTAAG 1 cut(s) 1502
BisI GCNGC 2 cut(s) 6, 1176
BlpI GCTNAGC 1 cut(s) 1596
BlsI GCNGC 2 cut(s) 7, 1177
Bme1390I CCNGG 3 cut(s) 381, 1144, 1322
BmgBI CACGTC 1 cut(s) 487
BmiI GGNNCC 1 cut(s) 1530
BmrFI CCNGG 3 cut(s) 381, 1144, 1322
BmsI GCATC 4 cut(s) 765, 847, 1371, 1394
BmtI GCTAGC 2 cut(s) 38, 1545
Bpu1102I GCTNAGC 1 cut(s) 1596
BpuMI CCSGG 2 cut(s) 1144, 1322
BsaAI YACGTR 2 cut(s) 1020, 1125
BsaBI GATNNNNATC 2 cut(s) 506, 1241
BsaWI WCCGGW 1 cut(s) 200
Bse8I GATNNNNATC 2 cut(s) 506, 1241
BseAI TCCGGA 1 cut(s) 200
BseBI CCWGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 1330
BseJI GATNNNNATC 2 cut(s) 506, 1241
BseMII CTCAG 1 cut(s) 1587
BseXI GCAGC 1 cut(s) 1187
BsiSI CCGG 3 cut(s) 201, 1143, 1322
BslFI GGGAC 2 cut(s) 1099, 1304
BsmAI GTCTC 3 cut(s) 146, 290, 1113
BsmBI CGTCTC 2 cut(s) 146, 290
BsmFI GGGAC 2 cut(s) 1099, 1304
BsmI GAATGC 1 cut(s) 860
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 6 cut(s) 383, 507, 550, 979, 1633, 1659
Bsp1720I GCTNAGC 1 cut(s) 1596
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 1588
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 1530
BspOI GCTAGC 2 cut(s) 38, 1545
BspPI GGATC 3 cut(s) 391, 987, 1628
BspTI CTTAAG 1 cut(s) 1502
BssMI GATC 6 cut(s) 383, 507, 550, 979, 1633, 1659
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 3 cut(s) 712, 818, 1218
Bst6I CTCTTC 3 cut(s) 983, 1194, 1509
BstAFI CTTAAG 1 cut(s) 1502
BstBAI YACGTR 2 cut(s) 1020, 1125
BstC8I GCNNGC 2 cut(s) 36, 1543
BstDEI CTNAG 3 cut(s) 1179, 1596, 1652
BstF5I GGATG 1 cut(s) 1330
BstKTI GATC 6 cut(s) 386, 510, 553, 982, 1636, 1662
BstMAI GTCTC 3 cut(s) 146, 290, 1113
BstMBI GATC 6 cut(s) 383, 507, 550, 979, 1633, 1659
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 1688
BstSCI CCNGG 3 cut(s) 379, 1142, 1320
BstSFI CTRYAG 3 cut(s) 1150, 1336, 1546
BstSNI TACGTA 1 cut(s) 1020
BstV1I GCAGC 1 cut(s) 1187
BtrI CACGTC 1 cut(s) 487
BtsCI GGATG 1 cut(s) 1330
Cac8I GCNNGC 2 cut(s) 36, 1543
Csp6I GTAC 1 cut(s) 702
CviAII CATG 4 cut(s) 98, 1270, 1352, 1685
CviQI GTAC 1 cut(s) 702
DdeI CTNAG 3 cut(s) 1179, 1596, 1652
DpnI GATC 6 cut(s) 385, 509, 552, 981, 1635, 1661
DpnII GATC 6 cut(s) 383, 507, 550, 979, 1633, 1659
Eam1104I CTCTTC 3 cut(s) 983, 1194, 1509
EarI CTCTTC 3 cut(s) 983, 1194, 1509
Eco105I TACGTA 1 cut(s) 1020
Eco57I CTGAAG 1 cut(s) 1152
EcoRII CCWGG 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 862
Esp3I CGTCTC 2 cut(s) 146, 290
FaeI CATG 4 cut(s) 101, 1273, 1355, 1688
FaqI GGGAC 2 cut(s) 1099, 1304
FatI CATG 4 cut(s) 97, 1269, 1351, 1684
FbaI TGATCA 1 cut(s) 507
Fnu4HI GCNGC 2 cut(s) 6, 1176
FokI GGATG 1 cut(s) 1337
Fsp4HI GCNGC 2 cut(s) 6, 1176
FspBI CTAG 6 cut(s) 35, 1136, 1310, 1389, 1542, 1665
GluI GCNGC 2 cut(s) 6, 1176
HapII CCGG 3 cut(s) 201, 1143, 1322
Hin1II CATG 4 cut(s) 101, 1273, 1355, 1688
HindIII AAGCTT 2 cut(s) 66, 544
HpaII CCGG 3 cut(s) 201, 1143, 1322
HphI GGTGA 2 cut(s) 542, 647
Hpy166II GTNNAC 1 cut(s) 1424
Hpy188I TCNGA 4 cut(s) 262, 507, 1014, 1264
Hpy188III TCNNGA 4 cut(s) 201, 1098, 1170, 1665
Hpy8I GTNNAC 1 cut(s) 1424
Hpy99I CGWCG 2 cut(s) 878, 1222
HpyAV CCTTC 5 cut(s) 143, 155, 640, 1060, 1466
HpyCH4III ACNGT 3 cut(s) 712, 818, 1218
HpyCH4IV ACGT 4 cut(s) 266, 486, 1019, 1124
HpyCH4V TGCA 5 cut(s) 627, 778, 860, 1083, 1362
HpyF3I CTNAG 3 cut(s) 1179, 1596, 1652
HpySE526I ACGT 4 cut(s) 266, 486, 1019, 1124
Hsp92II CATG 4 cut(s) 101, 1273, 1355, 1688
Kpn2I TCCGGA 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 6 cut(s) 383, 507, 550, 979, 1633, 1659
LmnI GCTCC 2 cut(s) 1172, 1534
Lsp1109I GCAGC 1 cut(s) 1187
LweI GCATC 4 cut(s) 765, 847, 1371, 1394
MaeI CTAG 6 cut(s) 35, 1136, 1310, 1389, 1542, 1665
MaeII ACGT 4 cut(s) 266, 486, 1019, 1124
MaeIII GTNAC 5 cut(s) 240, 902, 910, 1120, 1225
MalI GATC 6 cut(s) 385, 509, 552, 981, 1635, 1661
MboI GATC 6 cut(s) 383, 507, 550, 979, 1633, 1659
Mph1103I ATGCAT 1 cut(s) 862
MroI TCCGGA 1 cut(s) 200
MroXI GAANNNNTTC 2 cut(s) 161, 392
MspCI CTTAAG 1 cut(s) 1502
MspI CCGG 3 cut(s) 201, 1143, 1322
MspR9I CCNGG 3 cut(s) 381, 1144, 1322
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 1 cut(s) 381
NciI CCSGG 2 cut(s) 1144, 1322
NdeII GATC 6 cut(s) 383, 507, 550, 979, 1633, 1659
NheI GCTAGC 2 cut(s) 34, 1541
NlaIII CATG 4 cut(s) 101, 1273, 1355, 1688
NlaIV GGNNCC 1 cut(s) 1530
NmuCI GTSAC 2 cut(s) 910, 1120
NsiI ATGCAT 1 cut(s) 862
NspI RCATGY 1 cut(s) 1688
PciI ACATGT 1 cut(s) 1684
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PctI GAATGC 1 cut(s) 860
PdmI GAANNNNTTC 2 cut(s) 161, 392
PfoI TCCNGGA 2 cut(s) 379, 1320
PkrI GCNGC 2 cut(s) 7, 1177
Ppu21I YACGTR 2 cut(s) 1020, 1125
PscI ACATGT 1 cut(s) 1684
PshBI ATTAAT 1 cut(s) 720
PsiI TTATAA 2 cut(s) 813, 918
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 1530
RsaI GTAC 1 cut(s) 703
RsaNI GTAC 1 cut(s) 702
SatI GCNGC 2 cut(s) 6, 1176
Sau3AI GATC 6 cut(s) 383, 507, 550, 979, 1633, 1659
ScrFI CCNGG 3 cut(s) 381, 1144, 1322
SfaNI GCATC 4 cut(s) 765, 847, 1371, 1394
SfcI CTRYAG 3 cut(s) 1150, 1336, 1546
SmlI CTYRAG 1 cut(s) 1502
SmoI CTYRAG 1 cut(s) 1502
SnaBI TACGTA 1 cut(s) 1020
SsiI CCGC 1 cut(s) 5
SspMI CTAG 6 cut(s) 35, 1136, 1310, 1389, 1542, 1665
StyD4I CCNGG 3 cut(s) 379, 1142, 1320
TaaI ACNGT 3 cut(s) 712, 818, 1218
TaiI ACGT 4 cut(s) 269, 489, 1022, 1127
TaqI TCGA 9 cut(s) 363, 386, 873, 1220, 1245, 1291, 1403, 1410, 1586
TauI GCSGC 1 cut(s) 8
TseFI GTSAC 2 cut(s) 910, 1120
TseI GCWGC 1 cut(s) 1175
Tsp45I GTSAC 2 cut(s) 910, 1120
TspDTI ATGAA 8 cut(s) 114, 839, 965, 1001, 1319, 1340, 1391, 1395
TspGWI ACGGA 1 cut(s) 1101
Vha464I CTTAAG 1 cut(s) 1502
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 4 cut(s) 40, 82, 91, 101
XbaI TCTAGA 1 cut(s) 1664
XceI RCATGY 1 cut(s) 1688
XmnI GAANNNNTTC 2 cut(s) 161, 392
XspI CTAG 6 cut(s) 35, 1136, 1310, 1389, 1542, 1665
Zsp2I ATGCAT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.