Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G11690 AT4G11690 |
| fragaria_vesca | FvH4_3g36170 |
| malus_domestica | MD03G1092900.v1.1 |
| prunus_persica | Prupe.6G076800_v2.0.a1 |
| pyrus_communis | pycom03g07420 |
| rosa_chinensis | RchiOBHm_Chr5g0064671 RchiOBHm_Chr5g0064911 |
| rosa_laevigata | RLG00000035740 RLG00000035742 |
| rosa_multiflora | Rmu_sc0020903.1_g000003 Rmu_sc0025431.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00016400 |
| rosa_rugosa | Rorug05G0366600 |
| rosa_samantha | Rh5AG425100 Rh5CG462600 Rh5DG453100 |
| rosa_wichuraiana | Rw5G039940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 512 |
| AccB1I | GGYRCC | 1 cut(s) | 1321 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 40 |
| AccI | GTMKAC | 2 cut(s) | 1235, 1332 |
| AciI | CCGC | 2 cut(s) | 53, 936 |
| AcuI | CTGAAG | 1 cut(s) | 1115 |
| AfaI | GTAC | 1 cut(s) | 811 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 281 |
| Alw26I | GTCTC | 4 cut(s) | 591, 1122, 1221, 1766 |
| Ama87I | CYCGRG | 1 cut(s) | 1758 |
| AoxI | GGCC | 2 cut(s) | 373, 900 |
| ApeKI | GCWGC | 2 cut(s) | 522, 1724 |
| AseI | ATTAAT | 1 cut(s) | 786 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 21, 872 |
| AspS9I | GGNCC | 1 cut(s) | 373 |
| AsuC2I | CCSGG | 1 cut(s) | 1689 |
| AsuHPI | GGTGA | 4 cut(s) | 55, 545, 650, 1201 |
| AsuII | TTCGAA | 1 cut(s) | 1634 |
| AvaI | CYCGRG | 1 cut(s) | 1758 |
| BaeGI | GKGCMC | 1 cut(s) | 1495 |
| BanI | GGYRCC | 1 cut(s) | 1321 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1587, 1619 |
| BbvI | GCAGC | 2 cut(s) | 509, 1736 |
| BclI | TGATCA | 2 cut(s) | 825, 1087 |
| BcnI | CCSGG | 1 cut(s) | 1689 |
| BcoDI | GTCTC | 4 cut(s) | 591, 1122, 1221, 1766 |
| BfaI | CTAG | 3 cut(s) | 1121, 1545, 1668 |
| BisI | GCNGC | 2 cut(s) | 523, 1725 |
| BlsI | GCNGC | 2 cut(s) | 524, 1726 |
| Bme1390I | CCNGG | 1 cut(s) | 1689 |
| BmeT110I | CYCGRG | 1 cut(s) | 1758 |
| BmgT120I | GGNCC | 1 cut(s) | 373 |
| BmiI | GGNNCC | 3 cut(s) | 1323, 1428, 1533 |
| BmrFI | CCNGG | 1 cut(s) | 1689 |
| BmrI | ACTGGG | 1 cut(s) | 166 |
| BmsI | GCATC | 2 cut(s) | 1240, 1397 |
| BmuI | ACTGGG | 1 cut(s) | 166 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1466, 1498 |
| BpmI | CTGGAG | 1 cut(s) | 1194 |
| Bpu14I | TTCGAA | 1 cut(s) | 1634 |
| BpuMI | CCSGG | 1 cut(s) | 1689 |
| BsaI | GGTCTC | 1 cut(s) | 591 |
| BsaJI | CCNNGG | 4 cut(s) | 94, 1254, 1302, 1688 |
| BsaWI | WCCGGW | 1 cut(s) | 197 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 107, 131, 137, 161 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 281 |
| Bse1I | ACTGG | 1 cut(s) | 172 |
| Bse3DI | GCAATG | 1 cut(s) | 913 |
| BseDI | CCNNGG | 4 cut(s) | 94, 1254, 1302, 1688 |
| BseGI | GGATG | 7 cut(s) | 30, 209, 568, 924, 1003, 1711, 1744 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 281 |
| BseMI | GCAATG | 1 cut(s) | 913 |
| BseMII | CTCAG | 4 cut(s) | 338, 960, 1487, 1641 |
| BseNI | ACTGG | 1 cut(s) | 172 |
| BseRI | GAGGAG | 6 cut(s) | 17, 73, 139, 182, 227, 1288 |
| BseSI | GKGCMC | 1 cut(s) | 1495 |
| BseXI | GCAGC | 2 cut(s) | 509, 1736 |
| Bsh1285I | CGRYCG | 1 cut(s) | 202 |
| BshFI | GGCC | 2 cut(s) | 375, 902 |
| BshNI | GGYRCC | 1 cut(s) | 1321 |
| BsiEI | CGRYCG | 1 cut(s) | 202 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1758 |
| BsiSI | CCGG | 2 cut(s) | 198, 1688 |
| BslFI | GGGAC | 3 cut(s) | 160, 217, 257 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 281 |
| BsmAI | GTCTC | 4 cut(s) | 591, 1122, 1221, 1766 |
| BsmBI | CGTCTC | 1 cut(s) | 1122 |
| BsmFI | GGGAC | 3 cut(s) | 160, 217, 257 |
| BsnI | GGCC | 2 cut(s) | 375, 902 |
| Bso31I | GGTCTC | 1 cut(s) | 591 |
| BsoBI | CYCGRG | 1 cut(s) | 1758 |
| Bsp119I | TTCGAA | 1 cut(s) | 1634 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1495 |
| Bsp143I | GATC | 4 cut(s) | 386, 825, 1087, 1262 |
| Bsp19I | CCATGG | 1 cut(s) | 1302 |
| BspACI | CCGC | 2 cut(s) | 53, 936 |
| BspANI | GGCC | 2 cut(s) | 375, 902 |
| BspCNI | CTCAG | 4 cut(s) | 337, 961, 1488, 1640 |
| BspLI | GGNNCC | 3 cut(s) | 1323, 1428, 1533 |
| BspQI | GCTCTTC | 1 cut(s) | 27 |
| BspT104I | TTCGAA | 1 cut(s) | 1634 |
| BspT107I | GGYRCC | 1 cut(s) | 1321 |
| BspTNI | GGTCTC | 1 cut(s) | 591 |
| BsrDI | GCAATG | 1 cut(s) | 913 |
| BsrI | ACTGG | 1 cut(s) | 172 |
| BssECI | CCNNGG | 4 cut(s) | 94, 1254, 1302, 1688 |
| BssMI | GATC | 4 cut(s) | 386, 825, 1087, 1262 |
| BssNAI | GTATAC | 1 cut(s) | 1236 |
| BssT1I | CCWWGG | 3 cut(s) | 94, 1254, 1302 |
| Bst1107I | GTATAC | 1 cut(s) | 1236 |
| Bst4CI | ACNGT | 3 cut(s) | 715, 1404, 1553 |
| Bst6I | CTCTTC | 2 cut(s) | 27, 986 |
| BstBI | TTCGAA | 1 cut(s) | 1634 |
| BstC8I | GCNNGC | 4 cut(s) | 53, 168, 339, 904 |
| BstDEI | CTNAG | 6 cut(s) | 268, 324, 969, 1496, 1627, 1776 |
| BstDSI | CCRYGG | 1 cut(s) | 1302 |
| BstF5I | GGATG | 7 cut(s) | 30, 209, 568, 924, 1003, 1711, 1744 |
| BstKTI | GATC | 4 cut(s) | 389, 828, 1090, 1265 |
| BstMAI | GTCTC | 4 cut(s) | 591, 1122, 1221, 1766 |
| BstMBI | GATC | 4 cut(s) | 386, 825, 1087, 1262 |
| BstMCI | CGRYCG | 1 cut(s) | 202 |
| BstNSI | RCATGY | 2 cut(s) | 808, 1216 |
| BstSCI | CCNGG | 1 cut(s) | 1687 |
| BstSLI | GKGCMC | 1 cut(s) | 1495 |
| BstV1I | GCAGC | 2 cut(s) | 509, 1736 |
| BstZ17I | GTATAC | 1 cut(s) | 1236 |
| BsuRI | GGCC | 2 cut(s) | 375, 902 |
| BtgI | CCRYGG | 1 cut(s) | 1302 |
| BtsCI | GGATG | 7 cut(s) | 30, 209, 568, 924, 1003, 1711, 1744 |
| BtsIMutI | CAGTG | 2 cut(s) | 835, 1493 |
| Cac8I | GCNNGC | 4 cut(s) | 53, 168, 339, 904 |
| Cfr13I | GGNCC | 1 cut(s) | 373 |
| Csp6I | GTAC | 1 cut(s) | 810 |
| CviAII | CATG | 9 cut(s) | 805, 1213, 1273, 1289, 1303, 1355, 1366, 1460, 1751 |
| CviQI | GTAC | 1 cut(s) | 810 |
| DdeI | CTNAG | 6 cut(s) | 268, 324, 969, 1496, 1627, 1776 |
| DpnI | GATC | 4 cut(s) | 388, 827, 1089, 1264 |
| DpnII | GATC | 4 cut(s) | 386, 825, 1087, 1262 |
| DraI | TTTAAA | 1 cut(s) | 469 |
| Eam1104I | CTCTTC | 2 cut(s) | 27, 986 |
| EarI | CTCTTC | 2 cut(s) | 27, 986 |
| Eco130I | CCWWGG | 3 cut(s) | 94, 1254, 1302 |
| Eco31I | GGTCTC | 1 cut(s) | 591 |
| Eco57I | CTGAAG | 1 cut(s) | 1115 |
| Eco88I | CYCGRG | 1 cut(s) | 1758 |
| EcoO109I | RGGNCCY | 1 cut(s) | 373 |
| EcoT14I | CCWWGG | 3 cut(s) | 94, 1254, 1302 |
| EcoT22I | ATGCAT | 1 cut(s) | 1367 |
| ErhI | CCWWGG | 3 cut(s) | 94, 1254, 1302 |
| Esp3I | CGTCTC | 1 cut(s) | 1122 |
| FaeI | CATG | 9 cut(s) | 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463, 1754 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 251, 283, 1704, 1736 |
| FaqI | GGGAC | 3 cut(s) | 160, 217, 257 |
| FatI | CATG | 9 cut(s) | 804, 1212, 1272, 1288, 1302, 1354, 1365, 1459, 1750 |
| FauI | CCCGC | 2 cut(s) | 60, 929 |
| FbaI | TGATCA | 2 cut(s) | 825, 1087 |
| FblI | GTMKAC | 2 cut(s) | 1235, 1332 |
| Fnu4HI | GCNGC | 2 cut(s) | 523, 1725 |
| FokI | GGATG | 7 cut(s) | 17, 196, 575, 911, 1010, 1718, 1751 |
| Fsp4HI | GCNGC | 2 cut(s) | 523, 1725 |
| FspBI | CTAG | 3 cut(s) | 1121, 1545, 1668 |
| GluI | GCNGC | 2 cut(s) | 523, 1725 |
| GsuI | CTGGAG | 1 cut(s) | 1194 |
| HaeIII | GGCC | 2 cut(s) | 375, 902 |
| HapII | CCGG | 2 cut(s) | 198, 1688 |
| Hin1II | CATG | 9 cut(s) | 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463, 1754 |
| HinfI | GANTC | 6 cut(s) | 204, 1141, 1415, 1456, 1625, 1631 |
| HpaII | CCGG | 2 cut(s) | 198, 1688 |
| HphI | GGTGA | 4 cut(s) | 55, 545, 650, 1201 |
| Hpy166II | GTNNAC | 3 cut(s) | 705, 1236, 1333 |
| Hpy188I | TCNGA | 7 cut(s) | 747, 1035, 1140, 1267, 1536, 1630, 1699 |
| Hpy188III | TCNNGA | 4 cut(s) | 736, 947, 1668, 1760 |
| Hpy8I | GTNNAC | 3 cut(s) | 705, 1236, 1333 |
| HpyAV | CCTTC | 3 cut(s) | 136, 749, 1303 |
| HpyCH4III | ACNGT | 3 cut(s) | 715, 1404, 1553 |
| HpyCH4IV | ACGT | 2 cut(s) | 315, 1232 |
| HpyCH4V | TGCA | 7 cut(s) | 166, 630, 840, 906, 1365, 1470, 1724 |
| HpyF3I | CTNAG | 6 cut(s) | 268, 324, 969, 1496, 1627, 1776 |
| HpySE526I | ACGT | 2 cut(s) | 315, 1232 |
| Hsp92II | CATG | 9 cut(s) | 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463, 1754 |
| Ksp22I | TGATCA | 2 cut(s) | 825, 1087 |
| Kzo9I | GATC | 4 cut(s) | 386, 825, 1087, 1262 |
| LguI | GCTCTTC | 1 cut(s) | 27 |
| LmnI | GCTCC | 2 cut(s) | 679, 1426 |
| Lsp1109I | GCAGC | 2 cut(s) | 509, 1736 |
| LweI | GCATC | 2 cut(s) | 1240, 1397 |
| MaeI | CTAG | 3 cut(s) | 1121, 1545, 1668 |
| MaeII | ACGT | 2 cut(s) | 315, 1232 |
| MaeIII | GTNAC | 8 cut(s) | 3, 913, 1018, 1123, 1177, 1228, 1398, 1547 |
| MalI | GATC | 4 cut(s) | 388, 827, 1089, 1264 |
| MboI | GATC | 4 cut(s) | 386, 825, 1087, 1262 |
| MfeI | CAATTG | 1 cut(s) | 1239 |
| MhlI | GDGCHC | 1 cut(s) | 1495 |
| MluCI | AATT | 6 cut(s) | 536, 764, 930, 1239, 1245, 1662 |
| MlyI | GAGTC | 1 cut(s) | 1619 |
| MmeI | TCCRAC | 2 cut(s) | 725, 1044 |
| Mph1103I | ATGCAT | 1 cut(s) | 1367 |
| MroXI | GAANNNNTTC | 2 cut(s) | 21, 872 |
| MseI | TTAA | 7 cut(s) | 248, 423, 468, 786, 1349, 1446, 1611 |
| MspA1I | CMGCKG | 1 cut(s) | 1093 |
| MspI | CCGG | 2 cut(s) | 198, 1688 |
| MspR9I | CCNGG | 1 cut(s) | 1689 |
| MunI | CAATTG | 1 cut(s) | 1239 |
| NciI | CCSGG | 1 cut(s) | 1689 |
| NcoI | CCATGG | 1 cut(s) | 1302 |
| NdeII | GATC | 4 cut(s) | 386, 825, 1087, 1262 |
| NlaIII | CATG | 9 cut(s) | 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463, 1754 |
| NlaIV | GGNNCC | 3 cut(s) | 1323, 1428, 1533 |
| NmuCI | GTSAC | 4 cut(s) | 3, 913, 1123, 1228 |
| NsiI | ATGCAT | 1 cut(s) | 1367 |
| NspI | RCATGY | 2 cut(s) | 808, 1216 |
| NspV | TTCGAA | 1 cut(s) | 1634 |
| PciSI | GCTCTTC | 1 cut(s) | 27 |
| PdmI | GAANNNNTTC | 2 cut(s) | 21, 872 |
| PfeI | GAWTC | 5 cut(s) | 204, 1141, 1415, 1456, 1631 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 40 |
| PkrI | GCNGC | 2 cut(s) | 524, 1726 |
| PleI | GAGTC | 1 cut(s) | 1619 |
| PpsI | GAGTC | 1 cut(s) | 1619 |
| PshBI | ATTAAT | 1 cut(s) | 786 |
| PsiI | TTATAA | 1 cut(s) | 512 |
| PspN4I | GGNNCC | 3 cut(s) | 1323, 1428, 1533 |
| PspPI | GGNCC | 1 cut(s) | 373 |
| PvuII | CAGCTG | 1 cut(s) | 1093 |
| RsaI | GTAC | 1 cut(s) | 811 |
| RsaNI | GTAC | 1 cut(s) | 810 |
| SapI | GCTCTTC | 1 cut(s) | 27 |
| SaqAI | TTAA | 7 cut(s) | 248, 423, 468, 786, 1349, 1446, 1611 |
| SatI | GCNGC | 2 cut(s) | 523, 1725 |
| Sau3AI | GATC | 4 cut(s) | 386, 825, 1087, 1262 |
| Sau96I | GGNCC | 1 cut(s) | 373 |
| SchI | GAGTC | 1 cut(s) | 1619 |
| ScrFI | CCNGG | 1 cut(s) | 1689 |
| SduI | GDGCHC | 1 cut(s) | 1495 |
| SfaNI | GCATC | 2 cut(s) | 1240, 1397 |
| SfuI | TTCGAA | 1 cut(s) | 1634 |
| Sse9I | AATT | 6 cut(s) | 536, 764, 930, 1239, 1245, 1662 |
| SsiI | CCGC | 2 cut(s) | 53, 936 |
| SspMI | CTAG | 3 cut(s) | 1121, 1545, 1668 |
| StyD4I | CCNGG | 1 cut(s) | 1687 |
| StyI | CCWWGG | 3 cut(s) | 94, 1254, 1302 |
| TaaI | ACNGT | 3 cut(s) | 715, 1404, 1553 |
| TaiI | ACGT | 2 cut(s) | 318, 1235 |
| TaqI | TCGA | 8 cut(s) | 202, 876, 946, 1100, 1144, 1261, 1556, 1634 |
| TasI | AATT | 6 cut(s) | 536, 764, 930, 1239, 1245, 1662 |
| TfiI | GAWTC | 5 cut(s) | 204, 1141, 1415, 1456, 1631 |
| Tru1I | TTAA | 7 cut(s) | 248, 423, 468, 786, 1349, 1446, 1611 |
| Tru9I | TTAA | 7 cut(s) | 248, 423, 468, 786, 1349, 1446, 1611 |
| TscAI | CASTG | 2 cut(s) | 835, 1500 |
| TseFI | GTSAC | 4 cut(s) | 3, 913, 1123, 1228 |
| TseI | GCWGC | 2 cut(s) | 522, 1724 |
| Tsp45I | GTSAC | 4 cut(s) | 3, 913, 1123, 1228 |
| TspDTI | ATGAA | 9 cut(s) | 118, 794, 869, 894, 1004, 1277, 1382, 1448, 1722 |
| TspGWI | ACGGA | 3 cut(s) | 1104, 1637, 1718 |
| TspRI | CASTG | 2 cut(s) | 835, 1500 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 40 |
| VspI | ATTAAT | 1 cut(s) | 786 |
| XbaI | TCTAGA | 1 cut(s) | 1667 |
| XceI | RCATGY | 2 cut(s) | 808, 1216 |
| XmiI | GTMKAC | 2 cut(s) | 1235, 1332 |
| XmnI | GAANNNNTTC | 2 cut(s) | 21, 872 |
| XspI | CTAG | 3 cut(s) | 1121, 1545, 1668 |
| Zsp2I | ATGCAT | 1 cut(s) | 1367 |